genome.fa.s2425.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002425.1 Hibiscus syriacus cultivar Beakdansim tig00004962_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81161

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3543--3607	2	33.0	2	86	9	80	50	4	1	43	1.32
5868--6412	182	3.0	184	85	2	742	43	12	15	28	1.83
7462--7585	65	1.9	65	86	5	178	33	26	19	20	1.96
8199--8266	23	3.0	23	93	0	100	17	25	25	32	1.97
8196--8277	23	3.6	23	88	0	83	20	23	23	32	1.98
8356--8451	23	4.2	23	95	0	174	37	14	16	31	1.89
8473--8520	9	5.4	9	85	14	73	35	35	0	29	1.58
14711--14755	23	2.0	23	81	0	54	26	24	22	26	2.00
18441--18480	2	20.0	2	100	0	80	50	0	0	50	1.00
20277--20315	19	2.0	19	85	5	51	48	0	0	51	1.00
20465--20518	17	3.2	17	78	0	63	31	0	1	66	1.02
22104--22260	21	7.5	21	86	2	208	19	31	26	22	1.98
22782--22879	34	2.9	34	87	0	133	57	4	2	36	1.30
23780--24278	128	3.9	128	97	0	930	32	19	24	23	1.97
23780--24278	255	2.0	255	96	0	928	32	19	24	23	1.97
24818--24852	18	1.9	18	88	11	54	54	5	17	22	1.64
24980--25037	2	29.0	2	100	0	116	50	0	0	50	1.00
25134--25237	2	52.5	2	98	1	201	50	0	0	50	1.00
25859--26173	149	2.1	149	92	1	533	26	17	20	34	1.95
31449--31477	15	1.9	15	100	0	58	27	13	13	44	1.82
33435--33561	31	4.1	31	92	0	200	27	16	19	36	1.93
37328--37516	31	6.1	31	93	0	306	28	17	17	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38393--38744	160	2.2	161	85	4	480	27	16	6	49	1.70
50504--50531	10	2.8	10	100	0	56	28	21	10	39	1.87
61615--61696	18	4.4	18	83	7	74	24	30	19	25	1.98
61639--61696	18	3.2	18	87	4	80	24	31	20	24	1.98
62363--62400	18	2.1	18	90	0	58	34	7	5	52	1.53
64106--64273	79	2.1	81	88	5	252	32	1	11	55	1.43
70454--70494	13	3.2	13	92	0	64	34	17	21	26	1.95
70801--70829	15	1.9	15	100	0	58	13	0	3	82	0.79
72377--72423	21	2.2	21	88	0	67	38	17	25	19	1.92
72992--73234	135	1.8	134	85	4	346	24	27	18	29	1.98
75068--75108	5	8.2	5	88	0	64	17	2	2	78	0.98
75062--75108	15	3.1	15	90	3	67	17	6	2	74	1.12
78707--78761	28	2.0	28	82	7	67	29	9	21	40	1.84
79935--79993	21	2.8	21	89	0	100	6	30	42	20	1.78

Tables:   1

The End!