Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002427.1 Hibiscus syriacus cultivar Beakdansim tig00004965_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59058

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2879--2920
20
2.1
20
100
0
84
19
14
14
52
1.75
3519--3614
39
2.4
39
79
8
104
29
21
14
34
1.93
15513--15564
22
2.4
22
93
0
95
48
15
11
25
1.78
16248--16292
23
2.0
23
86
0
63
20
20
26
33
1.97
16258--16302
23
2.0
23
86
0
63
17
22
26
33
1.96
16871--16948
40
2.0
40
82
5
95
38
16
7
37
1.78
18071--18191
59
2.1
59
90
0
188
28
19
19
33
1.96
18559--18726
82
2.0
82
97
0
318
19
26
13
40
1.89
20053--20108
21
2.7
21
97
0
103
26
23
21
28
1.99
21752--21832
23
3.5
23
77
0
99
22
24
20
32
1.98
41198--41283
41
2.1
41
88
0
127
48
24
5
20
1.71
50559--50602
13
3.4
13
77
0
52
61
4
0
34
1.16
52671--52716
2
23.5
2
82
4
58
43
0
0
56
0.99
52703--53146
35
12.9
34
77
16
366
42
3
7
45
1.50
52805--53155
164
2.1
162
83
10
439
42
3
7
46
1.48
52946--53002
24
2.4
24
85
8
73
42
3
7
47
1.47
52840--53082
129
1.9
125
86
8
346
42
3
6
46
1.48
52911--53029
58
2.1
57
88
4
177
42
3
7
47
1.48
52993--53066
37
2.0
36
92
5
121
40
2
5
51
1.39
53166--53227
12
5.0
13
79
13
60
25
0
0
74
0.82
53182--53227
4
12.2
4
86
13
55
26
0
0
73
0.83
53171--53232
16
3.9
16
74
18
58
22
0
1
75
0.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54499--54528
2
15.0
2
100
0
60
50
0
0
50
1.00
54554--54609
27
2.1
26
81
15
62
17
0
7
75
1.03
54647--54681
2
18.5
2
88
11
56
48
0
0
51
1.00
56823--56855
18
1.9
17
88
11
50
27
24
18
30
1.98
58746--58773
2
14.0
2
100
0
56
50
0
0
50
1.00
58766--59009
92
2.7
90
81
13
286
32
16
20
30
1.95

Tables:   1

The End!