genome.fa.s2428.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002428.1 Hibiscus syriacus cultivar Beakdansim tig00004966_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73780

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
624--702	22	3.8	20	68	22	54	32	6	26	34	1.82
631--702	24	3.4	20	73	19	74	34	5	26	33	1.80
1103--1183	21	3.9	21	78	3	83	34	25	19	19	1.96
1100--1407	60	5.4	60	81	15	354	35	22	20	22	1.96
1099--1392	111	2.7	112	88	6	433	36	22	20	21	1.96
1112--1411	21	16.0	19	67	18	139	35	22	20	22	1.96
1192--1411	19	11.7	19	69	15	111	35	21	20	23	1.96
6584--6645	32	1.9	32	83	3	79	37	16	37	9	1.81
7437--7476	20	2.0	20	95	0	71	32	20	22	25	1.98
12360--12430	26	3.0	22	71	16	70	60	21	1	16	1.43
14153--14230	38	2.1	38	97	0	147	23	6	32	38	1.80
14411--14523	44	2.6	44	83	9	142	28	16	22	32	1.96
20154--20289	65	2.1	64	89	6	204	29	19	23	27	1.98
26449--26514	23	2.9	23	88	2	107	18	22	25	33	1.97
28646--28695	21	2.3	22	83	13	68	18	18	24	40	1.91
29831--30055	109	2.1	110	83	4	276	24	18	12	44	1.84
33855--33916	23	2.7	23	97	0	115	41	24	4	29	1.75
33934--34238	8	38.4	8	92	1	353	25	8	24	41	1.83
33934--34238	24	12.6	24	91	1	394	25	8	24	41	1.83
34555--34632	39	2.0	39	87	5	113	33	21	5	39	1.76
39098--39137	21	1.9	21	85	10	55	27	15	27	30	1.96
45830--45888	2	29.5	2	100	0	118	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47887--47937	8	6.5	8	78	17	54	23	23	37	15	1.93
47887--47924	16	2.2	17	90	9	60	26	23	34	15	1.95
47913--47986	13	5.3	13	75	15	76	17	21	43	17	1.88
47922--47990	31	2.2	31	89	0	102	15	20	44	18	1.86
47935--47969	18	1.9	18	88	0	52	17	22	40	20	1.92
49892--49966	35	2.1	35	90	0	114	34	29	26	9	1.88
50044--50134	24	3.8	24	83	2	112	37	18	17	26	1.93
50044--50134	47	1.9	48	86	2	130	37	18	17	26	1.93
52425--52462	16	2.2	17	86	9	51	21	23	36	18	1.95
53811--54482	335	2.0	334	97	0	1263	38	19	14	27	1.91
54738--54812	35	2.1	35	87	0	105	36	28	25	10	1.89
54894--54980	24	3.7	23	81	4	102	37	18	17	26	1.92
54896--54964	23	2.9	24	84	2	95	36	20	15	27	1.93
57261--57287	2	13.5	2	100	0	54	51	0	0	48	1.00
59157--59188	10	3.2	10	95	0	55	25	9	21	43	1.82
60785--60822	19	2.0	20	84	5	51	23	13	18	44	1.85
63707--63775	2	34.5	2	100	0	138	49	0	0	50	1.00
65349--65407	28	2.1	28	87	0	82	49	6	15	28	1.70

Tables:   1

The End!