genome.fa.s2429.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002429.1 Hibiscus syriacus cultivar Beakdansim tig00004967_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68163

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1364--1410	21	2.2	21	96	0	85	23	25	17	34	1.96
1400--1448	21	2.4	20	86	3	62	38	16	22	22	1.92
1482--1577	20	4.8	20	92	2	158	25	26	20	28	1.99
1859--1912	14	3.5	14	77	22	63	11	20	20	48	1.80
1841--1911	33	2.2	33	84	0	88	19	19	21	39	1.93
3359--3436	21	3.7	21	81	6	104	23	12	39	24	1.89
3778--3816	20	2.0	20	94	0	69	33	28	12	25	1.93
3804--3870	20	3.4	19	79	6	71	37	25	23	13	1.92
3859--3917	14	3.9	14	76	20	64	50	23	15	10	1.74
3843--3933	33	2.8	33	93	0	146	48	24	16	10	1.78
3843--3933	19	5.4	17	71	24	68	48	24	16	10	1.78
3929--3981	19	2.8	19	94	0	97	13	20	18	47	1.82
4541--4588	18	2.7	18	93	0	87	14	12	45	27	1.81
5906--5964	20	3.0	20	87	0	73	44	22	18	15	1.87
6436--6573	41	3.4	41	77	2	161	23	15	24	36	1.93
6456--6569	20	5.7	20	75	6	104	23	15	26	34	1.95
6559--6610	20	2.5	20	84	3	59	19	23	19	38	1.93
6496--6591	41	2.3	41	83	3	104	20	17	25	36	1.94
6600--6652	21	2.5	22	78	6	65	35	18	24	20	1.95
12915--13001	44	2.0	44	86	6	122	56	1	5	36	1.31
12922--13011	44	2.0	44	85	8	121	56	2	4	36	1.32
22479--22536	12	4.9	11	78	14	53	15	12	18	53	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22448--22542	24	4.0	24	79	2	93	20	13	17	48	1.81
29023--29293	137	2.0	132	87	5	391	32	21	15	30	1.94
35451--35491	14	3.0	14	89	10	59	43	29	0	26	1.55
37232--37278	23	2.0	23	83	0	58	65	4	2	27	1.22
38905--38948	18	2.4	19	81	11	56	13	0	47	38	1.43
44154--44196	17	2.5	17	85	10	61	67	0	0	32	0.91
44503--44572	25	2.8	25	97	0	131	34	7	7	51	1.57
52940--53000	17	3.6	17	73	20	56	14	19	9	55	1.67
52940--52989	17	2.9	17	82	5	57	16	18	12	54	1.72
52399--53030	333	1.9	331	90	1	998	26	17	7	48	1.74
53151--53338	65	2.9	63	84	4	223	34	20	11	34	1.88
53305--53376	35	2.1	35	97	0	135	33	20	18	27	1.96
53243--53431	100	1.9	100	88	0	288	34	22	13	29	1.93
53175--53495	165	1.9	165	88	0	480	34	21	13	31	1.91
53340--53495	65	2.4	65	89	0	231	34	21	13	30	1.92
55505--55548	18	2.4	18	81	7	54	50	27	4	18	1.66
60990--61383	132	3.0	132	97	1	738	21	20	21	37	1.94
63041--63106	33	2.0	33	88	2	98	43	12	0	43	1.41
65016--65074	29	2.2	28	82	11	70	37	18	18	25	1.94
66009--66090	41	2.0	41	100	0	164	29	12	19	39	1.88
66067--66108	14	3.0	14	89	0	66	28	14	7	50	1.69

Tables:   1

The End!