Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000243.1 Hibiscus syriacus cultivar Beakdansim tig00000428_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68640

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22682--22706
2
12.5
2
100
0
50
52
0
48
0
1.00
23563--23588
12
2.2
12
100
0
52
15
0
0
84
0.62
23861--23887
3
9.0
3
100
0
54
33
0
0
66
0.92
25989--26017
14
2.1
14
100
0
58
79
0
6
13
0.93
26078--26189
33
3.5
31
71
19
104
46
5
4
43
1.46
26057--26189
31
4.2
32
72
20
100
45
5
3
45
1.44
26096--26354
109
2.4
105
79
13
264
45
6
4
43
1.49
26981--28007
249
4.1
248
84
3
1244
24
20
23
31
1.98
27071--27998
329
2.8
329
87
3
1272
25
20
23
30
1.98
27068--27998
84
11.2
83
83
3
975
25
20
23
30
1.98
34261--34289
14
2.1
14
100
0
58
79
0
6
13
0.93
34327--34459
32
4.2
32
72
14
121
45
5
3
45
1.44
34335--34608
37
7.7
37
76
14
197
47
4
4
44
1.43
35655--35699
14
2.9
16
78
18
51
53
2
0
44
1.13
39795--39844
2
25.0
2
100
0
100
50
0
0
50
1.00
42115--42160
24
1.9
24
86
0
65
52
13
10
23
1.71
45521--45577
12
4.8
12
72
8
53
47
17
15
19
1.83
45506--45614
48
2.3
47
84
6
130
48
15
15
20
1.81
45506--45614
24
4.5
25
77
11
102
48
15
15
20
1.81
50569--50593
9
2.8
9
100
0
50
24
0
32
44
1.54
50794--50981
62
3.0
63
76
6
193
30
17
19
32
1.95
50792--50982
31
6.1
31
80
4
170
30
17
19
32
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55284--55343
21
2.8
20
80
9
66
31
15
18
35
1.91
55369--55419
20
2.6
20
82
11
61
29
19
27
23
1.98
57659--57695
19
1.9
19
94
0
65
24
10
10
54
1.67
58399--58430
13
2.4
14
89
10
57
53
0
0
46
1.00
67641--67761
19
6.2
20
80
7
133
28
21
15
33
1.94
67641--67742
20
5.2
19
78
11
91
28
21
16
33
1.95
67863--68047
87
2.1
87
84
4
239
34
19
17
28
1.94
68303--68331
13
2.1
14
93
6
51
41
0
0
58
0.98

Tables:   1

The End!