Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002430.1 Hibiscus syriacus cultivar Beakdansim tig00004970_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67629

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
451--484
11
3.0
12
87
12
54
41
0
50
8
1.34
2010--2049
20
2.0
20
95
4
73
37
17
15
30
1.90
2064--2115
19
2.7
19
84
0
68
26
17
15
40
1.89
2508--2636
65
2.0
65
92
4
217
40
12
21
25
1.88
3018--3056
16
2.4
17
82
4
53
76
0
20
2
0.90
5560--5599
20
2.0
20
100
0
80
15
5
25
55
1.60
6903--6967
31
2.1
31
94
0
112
36
20
15
27
1.92
16939--16983
23
2.0
23
95
0
81
31
6
22
40
1.80
23182--23232
2
25.5
2
100
0
102
49
0
0
50
1.00
23452--23489
18
2.1
18
95
0
67
34
5
5
55
1.45
29651--29699
20
2.5
20
96
0
89
36
20
12
30
1.89
30293--30325
12
2.6
13
90
4
50
36
12
6
45
1.66
31979--32021
21
2.0
21
86
0
59
30
27
25
16
1.97
32001--32150
66
2.3
67
89
3
223
28
28
26
18
1.98
32456--32524
29
2.4
29
90
0
102
39
8
14
37
1.77
32539--32615
30
2.5
30
91
2
118
40
5
23
31
1.76
32826--32906
22
3.6
22
93
1
135
18
25
29
25
1.98
38951--38993
21
2.0
21
86
0
59
30
27
25
16
1.97
38973--39123
67
2.2
68
90
2
234
27
27
26
17
1.98
39426--39497
29
2.5
29
90
0
108
38
9
13
37
1.78
39512--39588
30
2.5
30
91
2
118
40
5
23
31
1.76
39799--39879
22
3.6
22
94
1
135
19
27
28
24
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40979--41016
18
2.1
18
90
0
58
34
2
5
57
1.35
41432--41488
22
2.6
22
100
0
114
31
29
21
17
1.96
42661--42703
20
2.2
20
100
0
86
37
9
18
34
1.83
48268--48315
24
2.0
24
100
0
96
45
4
16
33
1.67
51162--51220
20
3.0
19
83
11
66
38
22
15
23
1.92
52650--52767
20
5.8
20
87
1
101
16
21
23
38
1.93
52696--52767
20
3.6
20
94
0
126
9
25
22
43
1.83
52884--53031
41
3.6
41
96
0
260
38
24
15
21
1.92
52894--53007
20
5.6
20
67
8
86
40
24
17
17
1.91
61409--61941
266
2.0
266
98
0
1030
35
10
15
38
1.82
62351--62389
16
2.4
16
95
0
69
15
10
0
74
1.07
62351--62394
16
2.9
15
87
12
63
13
11
0
75
1.06
63643--63680
2
20.0
2
84
10
53
47
0
0
52
1.00

Tables:   1

The End!