genome.fa.s2431.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002431.1 Hibiscus syriacus cultivar Beakdansim tig00004971_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77092

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10940--11405	52	9.1	52	91	4	734	27	15	20	36	1.93
10940--11402	102	4.5	103	92	3	738	27	15	20	36	1.92
10937--11387	154	2.9	154	98	0	859	27	15	19	37	1.92
11351--11589	83	2.9	83	91	1	394	28	12	22	35	1.91
12210--12856	113	5.9	113	94	4	1092	37	12	19	30	1.89
13176--13248	3	24.7	3	90	2	112	34	4	0	61	1.15
13240--13291	25	2.0	25	88	3	77	63	1	0	34	1.06
14309--14366	28	2.0	30	83	6	75	27	6	6	58	1.50
18400--18439	20	2.0	21	85	5	55	32	7	25	35	1.84
19098--19130	15	2.2	15	94	0	57	54	0	6	39	1.25
19295--19354	23	2.7	23	87	5	79	21	16	28	33	1.95
23607--23675	23	3.0	23	82	0	75	30	27	21	20	1.98
24214--24274	30	2.0	30	84	6	79	40	16	4	37	1.70
29264--29350	23	3.7	23	81	3	111	25	24	27	22	2.00
29262--29360	47	2.1	47	98	0	189	29	21	24	25	1.99
29370--29572	93	2.1	98	85	10	276	36	24	12	26	1.91
47266--47339	30	2.4	31	75	20	75	39	6	2	51	1.43
52762--52819	23	2.7	22	81	7	66	22	29	20	27	1.99
56471--56988	258	2.0	258	96	0	964	28	15	17	38	1.89
57242--57366	57	2.2	57	91	0	196	48	9	22	20	1.78
59044--59074	15	2.1	15	93	0	53	45	0	0	54	0.99
65795--65934	30	4.6	30	80	2	154	26	15	11	46	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65798--65918	45	2.7	45	84	2	154	24	15	10	48	1.77
65795--65912	15	7.9	15	80	0	119	26	16	10	47	1.78
67182--67245	33	1.9	33	90	0	101	28	42	0	29	1.56
67230--67404	6	27.7	6	76	14	140	21	46	1	30	1.61
67196--67398	45	4.4	45	87	8	282	22	45	1	31	1.61
67196--67404	51	4.2	51	89	7	283	22	45	1	31	1.61
69218--69243	13	2.0	13	100	0	52	15	7	38	38	1.76
71197--71307	56	2.0	54	96	3	204	27	32	1	37	1.68
73182--73216	18	1.9	18	88	0	52	20	2	0	77	0.90

Tables:   1

The End!