Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002433.1 Hibiscus syriacus cultivar Beakdansim tig00004976_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96677

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2048--2078
11
2.8
11
95
0
53
25
0
0
74
0.82
17830--17870
17
2.5
17
88
4
57
21
21
29
26
1.99
18896--18936
16
2.6
16
100
0
82
26
24
24
24
2.00
19669--19725
29
2.0
29
86
10
82
45
0
1
52
1.11
29856--29904
25
2.0
25
83
0
62
53
2
2
42
1.24
35126--35151
11
2.4
11
100
0
52
34
0
7
57
1.27
49169--49208
17
2.4
17
95
0
71
30
27
25
17
1.97
54536--54739
102
2.0
102
98
0
390
35
21
11
32
1.89
67568--67629
29
2.1
29
88
5
90
19
48
22
9
1.78
67936--68019
29
2.9
29
92
0
132
25
29
29
15
1.96
68321--68358
9
4.2
9
83
10
51
31
0
2
65
1.06
68441--68493
28
1.9
27
88
3
79
32
1
16
49
1.57
68440--68504
27
2.3
29
82
10
82
36
1
15
46
1.55
68619--68673
18
3.4
18
65
31
52
38
0
9
52
1.33
68701--68740
21
1.9
21
100
0
80
27
0
15
57
1.38
68920--69023
30
3.4
30
82
12
115
39
1
10
48
1.49
71335--71382
14
3.6
14
81
16
66
47
16
0
35
1.47
71354--71696
60
6.3
49
75
20
292
46
11
0
41
1.43
71423--71525
35
3.2
35
62
25
91
47
10
0
41
1.38
71403--71866
60
8.1
59
85
10
646
46
12
0
41
1.43
71350--71865
109
4.7
109
88
6
770
46
11
0
41
1.42
71561--71587
10
2.7
10
100
0
54
40
18
0
40
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71615--71663
24
2.0
24
84
7
64
44
14
0
40
1.45
71690--71813
49
2.5
49
90
1
194
47
10
0
41
1.38
74939--74992
28
1.9
28
96
0
99
57
12
0
29
1.36
74935--74999
28
2.3
28
84
10
96
55
10
0
33
1.35
74969--75017
21
2.3
21
85
3
71
53
16
0
30
1.43
75643--75777
29
4.5
29
74
7
117
17
25
34
23
1.96

Tables:   1

The End!