genome.fa.s2434.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002434.1 Hibiscus syriacus cultivar Beakdansim tig00004977_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  151416

Tables:   1   

This is table  1  of  1  ( 93 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1308--1352	20	2.3	20	84	3	56	35	31	11	22	1.89
2115--2180	7	9.6	7	95	3	107	45	0	54	0	0.99
5999--6043	2	22.5	2	100	0	90	51	0	0	48	1.00
8304--8336	17	1.9	17	88	11	50	63	0	3	33	1.10
9480--9512	17	1.9	17	88	11	50	51	0	0	48	1.00
12168--12192	12	2.1	12	100	0	50	48	0	36	16	1.46
14563--14721	38	4.2	37	83	8	196	45	4	5	45	1.45
14563--14732	37	4.5	37	82	7	200	45	4	5	44	1.47
17002--17034	2	16.5	2	93	0	57	45	0	3	51	1.16
17067--17122	26	2.2	26	83	6	69	25	3	1	69	1.14
17145--17272	20	6.1	20	69	20	84	22	3	0	72	1.06
17142--17272	15	8.4	15	69	18	81	22	3	0	72	1.06
17097--17274	59	3.1	60	77	16	155	20	6	1	71	1.17
17292--17351	31	1.9	31	83	6	77	18	3	6	71	1.22
18000--18163	21	7.7	21	81	2	157	36	25	14	23	1.93
17975--18113	65	2.1	65	84	2	172	36	25	17	20	1.94
20928--20963	2	18.0	2	88	11	56	50	2	0	47	1.15
21162--21211	2	25.0	2	100	0	100	50	0	0	50	1.00
26458--26498	2	20.5	2	100	0	82	51	0	0	48	1.00
27530--27585	29	1.9	29	85	7	78	30	30	5	33	1.80
29520--29609	25	3.7	27	66	29	67	66	6	3	23	1.30
29614--29687	21	3.3	21	66	20	60	70	5	2	21	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29524--29732	47	4.8	44	83	11	250	67	5	3	22	1.28
29608--29674	17	4.6	14	71	21	57	67	4	1	26	1.19
29643--29726	39	2.2	39	89	2	125	67	5	4	21	1.31
30117--30173	21	2.7	21	75	0	60	28	17	28	26	1.98
32284--32339	29	1.9	29	82	13	71	37	7	26	28	1.83
36188--36247	2	30.0	2	89	0	93	55	0	0	45	0.99
36748--36786	19	2.1	19	100	0	78	15	10	38	35	1.81
36751--36792	19	2.2	19	91	0	66	21	7	35	35	1.81
42270--42335	28	2.4	28	97	0	123	50	6	19	24	1.70
43208--43312	54	1.9	55	80	5	124	33	20	19	26	1.96
43619--44361	81	9.2	81	87	2	990	36	11	20	30	1.89
46755--46816	3	20.7	3	80	12	74	61	3	1	33	1.22
64325--64364	21	1.9	21	90	10	64	57	7	5	30	1.48
68190--68273	22	3.8	22	81	9	98	22	30	26	20	1.98
68682--68714	15	2.1	16	88	5	50	30	0	9	60	1.27
71546--71579	15	2.3	15	90	10	52	76	0	17	5	0.98
73234--73291	21	3.0	19	83	11	82	29	8	10	51	1.65
73607--73675	34	2.0	35	88	5	104	23	34	21	20	1.96
74042--74112	34	2.1	34	87	7	101	35	14	26	23	1.93
79655--79720	32	2.1	32	100	0	132	36	16	3	43	1.64
81940--82003	2	32.0	2	90	0	101	46	1	3	48	1.27
85272--85296	5	5.0	5	100	0	50	0	20	0	80	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86472--86764	42	7.0	42	86	1	372	33	24	27	13	1.93
89872--90173	142	2.1	144	86	7	418	27	12	11	47	1.77
90508--90567	31	1.9	32	96	3	113	28	3	3	65	1.25
90509--90577	31	2.2	32	86	5	95	33	2	4	59	1.32
90556--90608	26	2.1	26	82	10	65	50	1	1	45	1.23
91050--91100	26	2.0	25	88	3	75	49	3	7	39	1.51
93835--93875	3	14.3	3	80	10	50	60	2	2	34	1.23
93835--93879	20	2.1	20	88	12	63	60	2	4	33	1.29
94266--94318	16	2.9	18	75	16	56	58	0	1	39	1.09
94266--94320	17	3.1	19	77	20	64	58	0	1	40	1.09
96036--96075	2	20.0	2	100	0	80	50	0	0	50	1.00
96260--96300	18	2.2	18	86	8	55	24	2	7	65	1.30
96306--96348	18	2.6	16	80	20	52	6	9	9	74	1.22
97427--97456	5	5.8	5	96	4	51	3	40	0	56	1.16
98205--98300	48	2.0	48	81	4	113	29	12	23	34	1.92
98933--98985	18	2.9	18	80	11	63	45	5	0	49	1.26
99040--99089	16	3.1	16	73	0	55	6	12	36	46	1.66
99102--99140	16	2.4	16	82	0	51	20	10	23	46	1.81
101191--101262	2	36.0	2	100	0	144	50	0	0	50	1.00
101941--102018	35	2.2	35	88	0	111	44	21	0	33	1.53
101941--102034	35	2.7	35	83	3	100	42	25	2	29	1.67
103458--103527	29	2.4	29	84	9	90	37	0	18	44	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106305--106341	18	2.1	18	90	5	58	13	40	0	45	1.43
107488--107551	29	2.2	30	85	2	85	12	17	9	60	1.57
109757--110217	118	3.8	119	71	16	308	36	18	12	32	1.88
111067--111146	35	2.3	35	82	4	108	41	21	1	36	1.61
111072--111162	35	2.5	35	70	10	85	40	25	1	32	1.63
111647--111936	148	2.0	144	89	4	449	48	8	6	35	1.62
112109--112188	35	2.3	35	77	0	88	35	1	16	47	1.55
113672--113757	28	3.1	27	72	11	75	43	2	2	52	1.26
113683--113732	10	4.9	10	80	9	57	38	2	0	60	1.09
113683--113733	19	2.5	22	81	12	63	39	1	0	58	1.09
117378--117448	22	3.2	22	75	15	67	39	22	14	23	1.91
117454--117517	21	3.1	21	77	2	58	26	15	25	32	1.95
120361--120455	48	2.0	48	95	0	172	31	21	17	29	1.96
120461--120615	64	2.4	64	91	4	242	30	18	22	28	1.97
120572--120611	18	2.3	18	86	4	55	32	17	25	25	1.97
121626--121680	27	2.0	27	85	0	74	29	14	43	12	1.82
121635--121689	27	2.0	27	82	0	65	29	21	38	10	1.88
123253--123316	24	2.9	21	74	17	67	29	18	20	31	1.96
123219--123316	45	2.2	44	82	12	112	28	19	21	30	1.97
128804--128842	20	2.0	20	94	0	69	25	20	28	25	1.99
132218--132303	41	2.1	42	97	2	165	36	17	26	19	1.94
135706--135774	30	2.3	30	84	0	93	27	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
149457--149614	55	2.9	54	76	9	149	25	20	22	31	1.98
149475--149957	55	8.9	54	81	8	341	25	23	19	30	1.98
149586--149785	102	1.9	105	83	7	257	23	24	22	30	1.99
149750--149966	55	3.9	55	93	2	357	27	25	15	31	1.96
150973--151033	32	1.9	32	83	6	79	11	14	0	73	1.09

Tables:   1

The End!