Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002435.1 Hibiscus syriacus cultivar Beakdansim tig00004980_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104052

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2848--2872
6
4.2
6
100
0
50
36
16
48
0
1.46
6287--6445
81
2.0
81
88
0
237
16
30
21
30
1.96
6562--6772
112
1.9
113
86
1
307
26
26
21
26
1.99
6562--6804
54
4.4
55
76
6
233
26
25
20
26
1.99
22254--22314
32
1.9
32
93
0
104
22
21
22
32
1.98
24449--24482
17
2.1
17
88
5
52
47
2
5
44
1.42
25734--25767
17
1.9
18
88
5
52
55
2
2
38
1.30
28088--28165
3
26.0
3
77
10
79
66
1
1
30
1.07
28363--28704
129
2.6
132
86
5
453
24
19
30
26
1.98
28716--28778
28
2.2
28
86
5
83
44
12
14
28
1.82
28736--28811
28
2.6
28
82
14
93
46
11
15
26
1.81
28989--29115
37
3.6
36
69
16
106
44
11
11
32
1.76
28978--29147
67
2.6
66
88
4
256
46
12
10
31
1.74
29103--29159
27
2.1
27
93
0
96
45
15
7
31
1.73
29146--29249
52
2.0
53
94
3
183
36
17
13
32
1.89
29260--29338
27
2.9
26
80
14
97
49
15
10
25
1.75
29260--29338
28
3.0
26
83
10
106
49
15
10
25
1.75
29574--29673
34
2.9
34
80
8
112
38
12
20
30
1.88
29581--29673
36
2.7
34
81
3
114
36
12
19
31
1.89
29763--29881
36
3.3
35
80
6
139
35
12
15
36
1.86
30429--30498
4
18.0
4
79
5
81
30
2
20
47
1.64
31685--31735
12
4.4
12
87
9
79
5
9
11
72
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31686--31734
11
4.4
11
84
2
62
6
10
12
71
1.30
31670--31794
11
10.4
12
67
13
53
3
15
10
71
1.26
31732--31770
21
2.0
21
90
10
64
0
20
7
71
1.10
32399--32469
20
3.0
24
71
22
78
40
11
23
23
1.87
32396--32475
26
3.3
26
70
20
82
42
10
23
23
1.84
36443--36476
17
1.9
18
88
5
52
55
2
2
38
1.30
38803--38886
17
4.9
17
80
15
93
65
1
1
32
1.08
38810--38886
3
26.0
3
77
12
79
66
1
1
31
1.08
47799--47885
43
2.0
43
97
0
165
37
11
14
35
1.83
50168--50194
4
6.8
4
100
0
54
25
0
0
74
0.83
61581--61613
6
5.5
6
100
0
66
33
51
0
15
1.43
62072--62105
14
2.4
14
90
0
50
26
0
5
67
1.13
65655--65711
30
1.9
30
88
0
87
40
10
10
38
1.74
65997--66072
15
5.3
15
75
9
77
53
1
0
44
1.08
65996--66087
42
2.2
42
92
1
150
51
3
1
44
1.25
69787--69934
73
2.0
73
94
0
260
22
27
14
35
1.93
76284--76308
3
8.3
3
100
0
50
32
36
0
32
1.58
78446--78502
22
2.6
23
91
8
93
40
3
12
43
1.59
78516--78550
13
2.8
13
91
4
54
57
0
0
42
0.99
81539--81579
8
5.2
8
82
5
57
34
0
29
36
1.58
81647--82249
126
4.8
126
98
0
1174
21
26
20
32
1.98
81647--82249
250
2.4
252
98
0
1174
21
26
20
32
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82627--82731
33
3.2
32
81
11
131
38
2
4
54
1.36
83249--83342
21
4.5
21
92
5
129
20
26
35
18
1.95
85118--85157
19
2.0
21
85
9
57
52
0
0
47
1.00
92110--92149
19
2.2
19
86
4
55
20
10
0
70
1.16
93772--93957
97
1.9
100
89
5
297
30
25
20
23
1.98

Tables:   1

The End!