genome.fa.s2437.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002437.1 Hibiscus syriacus cultivar Beakdansim tig00004989_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91461

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10343--10498	29	5.6	29	73	12	112	46	17	1	33	1.60
10333--10433	26	3.7	27	73	22	77	48	13	0	36	1.50
10530--10567	20	1.9	19	89	5	58	36	23	18	21	1.95
17354--17495	29	5.0	29	78	13	150	49	11	0	38	1.45
17337--17495	29	5.5	28	79	10	135	48	10	1	39	1.46
17335--17495	85	1.9	87	85	7	231	47	10	1	40	1.46
25769--25799	14	2.2	14	94	0	53	61	6	25	6	1.45
25522--25935	204	2.0	206	87	2	600	38	16	23	21	1.93
29911--29973	24	2.6	24	84	2	81	15	15	12	55	1.69
31266--31305	14	3.1	13	82	10	55	60	0	0	40	0.97
32702--32791	3	29.7	3	93	2	153	63	0	1	35	1.02
33106--33777	114	5.9	114	95	1	1141	29	18	13	38	1.89
34577--34830	83	3.1	83	95	1	438	36	21	13	28	1.91
34660--35017	188	1.9	188	94	1	628	34	22	13	29	1.93
34743--34934	105	1.8	105	94	0	339	33	21	13	31	1.92
34848--35117	83	3.3	83	94	2	445	34	23	14	27	1.94
34513--35102	271	2.2	271	95	2	1051	34	22	13	28	1.93
36254--36316	14	4.6	14	88	9	87	0	12	0	87	0.55
36252--36323	23	3.2	23	86	9	103	0	13	0	86	0.58
36259--36326	28	2.4	28	87	7	93	0	14	0	85	0.60
36252--36316	1	65.0	1	75	0	58	0	12	0	87	0.54
36251--36323	11	6.5	11	85	7	94	0	15	0	84	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48431--48509	3	26.3	3	94	0	104	58	0	0	41	0.98
49687--49798	23	4.9	24	84	6	117	46	19	19	14	1.84
50123--50166	18	2.4	18	81	7	54	47	0	2	50	1.13
58991--59066	37	2.1	37	92	0	125	31	15	19	32	1.94
60359--60656	129	2.3	130	84	0	364	30	15	18	35	1.92
60359--60659	65	4.6	65	83	2	318	30	15	18	35	1.92
74782--74829	20	2.5	20	86	3	62	18	22	22	35	1.96
83565--83678	30	3.8	30	72	6	90	16	33	22	27	1.96
84818--84871	23	2.3	23	78	9	56	25	24	5	44	1.75
86567--86592	2	13.0	2	100	0	52	50	0	0	50	1.00
86927--86956	2	15.0	2	92	0	51	46	0	3	50	1.18

Tables:   1

The End!