genome.fa.s2438.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002438.1 Hibiscus syriacus cultivar Beakdansim tig00004992_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112600

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19597--19640	23	1.9	22	82	17	54	52	0	6	40	1.28
19859--19916	29	2.0	30	86	3	82	15	12	18	53	1.72
20010--20057	24	2.0	24	84	8	62	56	4	4	35	1.38
20570--20640	29	2.5	28	79	6	72	59	14	5	21	1.55
27283--27368	35	2.5	35	84	0	100	40	20	1	37	1.61
27337--27379	21	2.0	21	100	0	86	46	13	0	39	1.44
27499--27532	16	2.0	18	88	11	54	26	2	5	64	1.30
27995--28242	130	1.9	130	93	0	424	36	12	14	35	1.85
47404--47522	36	3.3	35	79	10	141	21	24	21	32	1.98
49165--49215	21	2.3	21	80	10	57	35	19	17	27	1.94
56426--56536	43	2.6	43	81	7	143	57	5	10	26	1.54
56475--56535	21	2.9	21	73	9	61	60	3	8	27	1.41
67830--67915	5	17.2	5	80	14	90	41	0	0	58	0.98
67830--67922	25	3.8	25	94	4	156	41	0	0	58	0.98
73473--73518	14	3.3	15	77	22	55	47	0	0	52	1.00
73615--73672	2	29.0	2	100	0	116	50	0	0	50	1.00
75491--75548	5	10.8	5	78	14	62	6	20	51	20	1.70
75484--75548	22	3.0	22	97	0	121	9	21	49	20	1.76
75518--75550	17	1.9	17	100	0	66	12	18	48	21	1.80
75550--75614	19	3.4	19	82	14	71	29	29	26	15	1.96
75547--75635	10	9.1	10	77	11	87	30	26	24	17	1.98
82806--82880	5	13.8	5	76	15	69	8	22	50	18	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82833--82882	17	2.9	17	100	0	100	12	22	48	18	1.80
82800--82863	22	2.9	22	100	0	128	9	23	48	18	1.77
82877--82975	9	10.3	9	78	10	90	30	27	26	16	1.96
82878--82975	29	3.4	28	85	5	124	30	27	25	16	1.96
82877--82975	19	5.2	18	75	12	90	30	27	26	16	1.96
87176--87225	26	1.9	26	84	8	66	32	2	6	60	1.32
91398--91425	14	2.0	14	100	0	56	50	7	0	42	1.30
91670--91708	10	3.9	10	89	0	60	0	20	20	58	1.39
91948--91999	17	3.1	17	75	13	54	50	1	3	44	1.31
106182--106589	51	8.0	51	87	3	545	37	26	18	18	1.93

Tables:   1

The End!