Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002439.1 Hibiscus syriacus cultivar Beakdansim tig00004995_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99971

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8347--8423
33
2.3
33
93
0
127
32
7
32
27
1.85
10425--10487
26
2.5
24
82
9
90
30
17
15
36
1.91
10469--10541
17
4.0
17
81
16
92
34
13
10
41
1.80
22233--22311
2
39.5
2
100
0
158
49
0
0
50
1.00
27060--27105
21
2.2
21
100
0
92
28
8
30
32
1.87
30443--30470
2
14.0
2
100
0
56
50
0
0
50
1.00
33570--33635
32
2.0
33
91
2
107
42
0
10
46
1.38
36079--36124
23
2.0
23
95
0
83
13
23
26
36
1.91
36094--36183
16
5.2
16
65
15
54
10
26
24
38
1.87
36095--36183
35
2.5
35
87
3
126
10
26
23
39
1.87
43879--43918
21
1.9
21
89
0
62
40
7
2
50
1.44
44636--44701
23
2.5
28
74
20
70
37
6
0
56
1.24
44648--44701
23
2.2
26
87
9
78
42
3
0
53
1.18
51379--51424
18
2.8
16
84
12
65
26
6
23
43
1.78
51381--51421
18
2.3
18
100
0
82
24
4
24
46
1.72
58783--58863
37
2.2
37
78
17
87
54
2
0
43
1.13
66431--66537
26
4.1
26
93
0
169
15
23
11
49
1.77
75558--75650
39
2.4
39
81
12
102
33
19
4
43
1.71
75784--75813
2
15.0
2
100
0
60
50
0
0
50
1.00
85108--85155
25
1.9
25
83
8
62
56
4
0
39
1.19
92402--92480
20
3.8
21
74
9
72
25
32
25
16
1.96
92442--92481
21
1.9
21
94
0
71
25
37
25
12
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
99347--99420
37
2.0
36
84
7
96
47
4
1
47
1.29

Tables:   1

The End!