Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000244.1 Hibiscus syriacus cultivar Beakdansim tig00000429_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72086

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8332--8435
36
2.9
36
94
0
181
23
16
16
44
1.86
10214--10275
14
4.3
14
73
6
52
37
0
14
48
1.44
10374--10427
20
2.7
20
79
0
63
46
25
16
11
1.80
10421--10463
20
2.2
20
83
4
52
25
20
25
27
1.99
10580--10655
39
1.9
39
81
5
91
38
13
14
34
1.85
10672--10717
14
3.3
14
90
0
74
8
13
26
52
1.69
11462--11519
16
3.6
16
85
0
89
8
12
20
58
1.59
11592--11622
16
1.9
16
100
0
62
9
12
19
58
1.62
11692--11906
20
11.6
20
73
16
196
25
19
21
33
1.97
11707--11878
34
4.9
34
82
10
211
23
19
23
34
1.97
11692--11898
54
3.8
54
76
8
224
24
19
22
33
1.97
11692--11844
74
2.1
74
93
2
263
24
20
22
32
1.98
11877--12146
140
1.9
140
96
0
495
42
15
14
28
1.86
12206--12236
12
2.6
12
94
0
53
16
6
29
48
1.70
14274--14310
14
2.6
14
91
4
56
5
21
21
51
1.68
15371--15460
20
4.3
20
83
8
99
30
20
24
25
1.99
15430--15523
20
4.7
20
92
2
136
26
20
17
36
1.94
17536--17568
16
2.1
16
94
0
57
54
24
15
6
1.63
17644--17711
10
6.1
10
72
21
55
61
20
8
8
1.52
23838--23885
24
2.0
25
83
4
62
54
4
6
35
1.45
24867--25012
30
4.8
30
73
11
136
41
3
6
48
1.45
24842--25025
91
2.0
91
96
0
341
41
2
5
49
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25009--25037
2
14.5
2
100
0
58
48
0
0
51
1.00
27815--27936
63
1.9
64
86
5
176
43
4
8
43
1.55
27808--27947
64
2.2
65
81
12
180
41
4
7
47
1.50
30623--30805
65
2.8
63
83
7
226
28
24
19
27
1.98
30573--30782
65
3.2
64
80
9
230
30
24
17
27
1.97
30754--30802
19
2.6
19
84
9
57
24
28
20
26
1.99
36570--36645
22
3.5
22
100
0
152
22
22
23
31
1.98
36647--36676
13
2.3
13
100
0
60
30
30
26
13
1.94
38810--38837
2
14.0
2
100
0
56
50
0
0
50
1.00
39320--39460
65
2.2
64
83
6
169
31
24
18
25
1.98
39320--39499
65
2.8
63
80
9
159
28
25
19
26
1.99
44620--44814
98
2.0
98
95
0
354
46
12
10
30
1.76
48331--48958
39
16.6
39
78
7
566
30
17
14
37
1.90
48557--48958
116
3.5
115
92
2
587
31
17
16
34
1.92
48331--48958
77
8.3
77
83
8
569
30
17
14
37
1.90
48977--49090
59
1.9
59
85
3
158
26
23
14
35
1.94
48975--49120
59
2.5
59
79
4
152
25
26
17
30
1.97
62945--63013
30
2.3
30
97
0
129
36
24
7
31
1.83

Tables:   1

The End!