Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002440.1 Hibiscus syriacus cultivar Beakdansim tig00004996_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77051

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
447--476
14
2.1
15
93
6
53
56
16
6
20
1.62
935--1308
192
1.9
193
91
0
606
34
15
14
35
1.88
3757--3783
4
6.8
4
100
0
54
74
0
0
25
0.83
3794--3820
13
2.1
13
100
0
54
22
25
14
37
1.93
5400--5433
17
1.9
18
94
5
61
47
26
8
17
1.77
5466--5515
11
4.5
11
82
5
64
36
30
12
22
1.90
5548--5613
14
4.4
15
74
12
55
54
1
0
43
1.09
5545--5637
45
2.1
45
84
8
118
50
3
0
46
1.17
5545--5638
46
2.1
45
84
6
118
50
3
0
46
1.17
8414--8439
2
13.0
2
100
0
52
50
0
50
0
1.00
12983--13137
83
1.9
82
91
1
256
30
12
17
39
1.87
16908--16957
2
25.0
2
100
0
100
50
0
0
50
1.00
16955--17014
18
3.3
18
79
9
68
10
6
5
78
1.08
16992--17021
14
2.1
14
93
0
51
10
6
6
76
1.15
18313--18338
2
13.0
2
100
0
52
50
0
0
50
1.00
24857--25567
231
3.0
231
84
6
857
28
12
17
41
1.86
26075--26337
145
1.8
145
91
0
436
23
11
22
42
1.86
34461--34508
21
2.3
21
92
0
78
29
12
4
54
1.56
34469--34510
21
2.0
21
100
0
84
28
9
4
57
1.51
36568--36763
97
2.0
96
97
1
365
30
7
6
55
1.54
36793--36882
23
3.9
23
82
11
112
31
1
1
66
1.06
36805--36911
12
9.2
12
71
21
61
31
1
2
63
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36788--36883
12
8.3
12
76
11
85
30
1
1
67
1.04
37156--37203
18
2.5
19
77
16
55
45
6
0
47
1.27
42419--42454
2
18.0
2
100
0
72
50
0
0
50
1.00
42748--42779
16
1.9
17
93
6
57
81
0
18
0
0.70
45047--45386
114
3.0
114
92
0
556
34
15
19
30
1.93
47449--47614
54
3.1
54
92
0
269
37
16
23
22
1.93
47974--48050
22
3.5
22
85
7
111
33
15
12
37
1.86
48489--48580
40
2.5
40
86
10
133
48
9
20
20
1.77
48527--49041
113
4.7
112
84
5
642
38
13
17
29
1.89
48647--48691
24
1.9
23
82
13
56
51
6
24
17
1.70
48863--48926
20
3.2
20
70
10
51
42
10
17
29
1.83
48526--49041
225
2.3
221
86
8
694
38
13
17
29
1.89
49003--49189
83
2.3
82
82
5
216
39
15
16
29
1.89
49209--49271
17
3.4
17
69
23
54
49
7
23
19
1.74
49174--49271
40
2.5
40
94
0
169
48
9
21
20
1.76
49273--49578
102
3.0
101
76
9
325
39
16
16
27
1.90
51133--51331
97
2.0
98
98
0
382
30
8
6
54
1.55
51373--51447
11
6.7
11
75
18
66
32
1
1
65
1.09
51395--51445
10
4.9
10
79
15
50
33
1
0
64
1.05
51362--51447
22
3.9
21
83
9
100
31
2
1
65
1.13
51721--51768
18
2.5
19
77
16
55
45
6
0
47
1.27
51648--51881
130
1.8
129
86
9
343
37
9
7
45
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53403--53477
38
2.0
37
84
5
98
48
2
1
48
1.24
56370--56427
28
2.1
28
96
0
107
51
3
8
36
1.49
57562--57600
16
2.4
17
82
8
53
41
41
10
7
1.68
57638--57697
21
2.9
21
82
5
77
23
18
21
36
1.95
57896--57947
2
26.0
2
96
0
95
50
0
1
48
1.12
66358--66414
24
2.4
24
93
0
96
26
10
42
21
1.85
66337--66415
18
4.1
18
74
17
68
31
8
36
22
1.85
71005--71038
3
11.0
3
93
6
59
32
0
64
2
1.08
75916--75992
3
25.7
3
100
0
154
32
0
0
67
0.91
75924--76005
12
6.9
12
95
4
77
32
0
0
67
0.91

Tables:   1

The End!