genome.fa.s2441.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002441.1 Hibiscus syriacus cultivar Beakdansim tig00004997_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  147266

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3384--3445	22	2.7	23	78	9	65	33	22	16	27	1.95
4052--4094	19	2.3	18	88	4	59	53	25	0	20	1.46
12549--12575	9	3.0	9	100	0	54	77	0	0	22	0.76
12551--12579	10	3.0	10	95	5	51	79	0	0	20	0.74
13178--13225	20	2.5	19	83	12	62	41	2	2	54	1.24
13178--13234	9	5.9	10	76	17	50	43	1	1	52	1.21
13178--13231	20	2.8	20	83	8	58	42	1	1	53	1.22
14142--14231	40	2.2	40	90	0	144	51	10	14	24	1.73
21923--22009	28	3.1	28	74	12	79	41	8	9	41	1.66
26854--27149	63	4.7	63	92	3	474	17	26	11	44	1.83
31406--31525	31	3.8	31	71	10	100	34	15	15	35	1.89
31420--31542	31	3.9	32	69	11	101	30	16	19	34	1.94
31382--31537	63	2.5	61	84	6	188	31	15	18	34	1.92
32703--32740	12	3.3	12	82	10	53	39	0	13	47	1.42
32703--32740	17	2.2	17	86	9	51	39	0	13	47	1.42
33997--34057	27	2.3	27	94	0	104	47	6	18	27	1.73
35619--35773	31	5.0	30	76	9	141	30	18	18	32	1.95
35616--35773	63	2.5	64	86	5	216	31	18	17	32	1.94
38163--38225	23	2.7	23	75	0	63	23	15	14	46	1.83
43839--43915	2	38.5	2	100	0	154	50	0	0	49	1.00
44891--44959	21	3.3	21	76	8	70	47	0	0	52	1.00
44978--45009	12	2.6	12	95	5	55	12	21	46	18	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53956--53980	10	2.5	10	100	0	50	32	0	0	68	0.90
58077--58157	31	2.6	31	94	3	137	33	20	3	41	1.70
57984--58279	153	1.9	152	80	3	344	31	18	6	42	1.76
67844--67884	22	1.9	22	85	5	57	58	2	2	36	1.24
68973--69001	14	2.1	14	100	0	58	55	0	0	44	0.99
71438--71520	41	2.0	41	100	0	166	25	19	14	40	1.89
71774--71804	16	1.9	16	93	0	53	41	3	25	29	1.71
84184--84639	6	76.0	6	100	0	912	33	0	16	50	1.46
87600--87772	59	2.9	58	77	8	152	41	6	20	31	1.79
87812--87871	31	1.9	31	86	6	86	36	8	8	46	1.64
101266--101345	27	3.2	27	62	20	64	18	21	27	32	1.97
101388--101518	57	2.3	57	92	1	210	12	12	35	38	1.82
101424--101513	27	3.2	27	70	20	76	12	12	35	40	1.80
101488--101873	45	8.2	45	74	12	278	11	15	32	39	1.84
101460--101829	93	3.9	93	82	8	444	12	14	32	40	1.83
101452--101829	195	2.0	192	87	3	553	11	14	33	40	1.83
101553--101739	102	1.8	102	90	2	304	11	15	33	39	1.83
108820--109290	102	4.8	95	85	8	503	11	15	33	39	1.83
108892--109266	102	3.8	102	89	3	527	10	16	33	40	1.83
108965--109154	57	3.6	57	66	23	160	11	15	35	37	1.83
108809--109290	195	2.5	190	84	6	587	11	15	32	39	1.84
109097--109252	48	3.3	48	72	12	160	12	15	33	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109097--109295	93	2.1	93	89	1	319	12	16	33	38	1.86
109890--109921	9	3.4	9	91	8	55	65	0	0	34	0.93
110048--110091	22	2.0	22	100	0	88	36	0	13	50	1.42
114769--114819	2	25.5	2	100	0	102	49	0	0	50	1.00
115092--115279	101	1.9	101	90	0	304	42	13	17	26	1.86
126187--126225	2	19.5	2	100	0	78	48	0	0	51	1.00
126581--126622	20	2.1	20	86	0	57	38	2	4	54	1.34
126887--126931	21	2.1	22	87	4	65	28	31	24	15	1.96
130985--131119	29	4.6	29	93	1	225	30	2	22	44	1.67
132052--132172	42	2.8	42	83	5	163	19	18	24	37	1.94
132150--132194	22	2.0	22	95	0	81	24	11	28	35	1.90
132108--132236	64	2.0	64	84	0	168	21	17	24	35	1.95
132172--132283	42	2.7	42	88	0	152	20	20	23	35	1.96
132065--132278	106	2.0	108	87	1	306	21	17	25	35	1.95
132178--132312	42	3.2	42	83	1	144	19	20	23	36	1.95
134370--134409	21	1.9	21	84	0	53	37	5	17	40	1.72
135648--135730	32	2.6	32	86	1	114	49	6	18	26	1.70
136433--136530	2	49.5	2	97	2	189	51	0	0	48	1.00
136772--136807	2	18.5	2	94	5	65	52	0	0	47	1.00
137765--137807	20	2.2	20	91	0	68	20	13	30	34	1.92
138324--138366	16	2.7	16	79	13	52	37	6	11	44	1.68
138332--138366	16	2.2	16	90	5	54	31	8	14	45	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
141813--141839	12	2.2	12	100	0	54	7	0	51	40	1.30

Tables:   1

The End!