Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002442.1 Hibiscus syriacus cultivar Beakdansim tig00004998_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75641

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3585--3741
65
2.4
64
89
7
230
31
17
21
29
1.96
3585--3786
65
3.1
64
77
15
202
29
16
22
30
1.96
10713--10777
24
2.5
26
80
14
80
40
7
13
38
1.74
10720--10773
24
2.2
24
93
0
90
40
7
14
37
1.74
13154--13282
42
3.1
42
84
5
129
28
6
41
22
1.79
13886--13977
40
2.3
41
79
7
98
32
6
15
45
1.71
14812--14909
38
2.6
38
80
7
119
50
20
12
17
1.78
14812--14922
38
2.9
38
80
6
118
49
21
11
17
1.78
15232--15298
29
2.3
29
94
0
116
40
7
7
44
1.61
24990--25059
22
3.2
22
79
4
70
35
11
17
35
1.85
30427--30503
15
4.9
15
68
14
57
28
2
2
66
1.18
30460--30516
29
2.0
28
83
16
73
29
5
0
64
1.15
30463--30516
27
1.9
29
85
14
78
29
5
0
64
1.16
32953--33006
14
3.8
14
82
4
63
24
14
9
51
1.71
40259--40313
22
2.5
22
84
0
74
32
14
16
36
1.89
40715--41259
112
4.9
112
87
0
698
37
14
19
28
1.91
41212--41275
19
3.3
19
65
26
53
46
7
26
18
1.76
41211--41278
22
3.3
22
66
26
67
48
7
26
17
1.73
41199--41298
39
2.6
39
100
0
200
46
8
24
22
1.78
41088--41407
151
2.1
151
92
1
534
40
11
20
27
1.87
40976--41519
263
2.1
264
90
0
856
38
12
20
28
1.89
41238--41534
112
2.6
112
93
1
506
38
12
19
28
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42966--43042
15
4.9
15
68
14
57
28
2
2
66
1.18
42999--43055
29
2.0
28
83
16
73
29
5
0
64
1.15
43002--43055
27
1.9
29
85
14
78
29
5
0
64
1.16
46239--46278
19
2.2
18
91
8
64
35
10
17
37
1.83
46425--46477
21
2.5
21
87
9
72
37
16
16
28
1.91
58072--58111
17
2.4
17
91
4
64
45
0
0
55
0.99
58072--58119
17
2.7
19
84
15
59
47
0
0
52
1.00
58370--58411
21
2.0
21
85
0
57
30
4
4
59
1.39
58434--58477
21
2.1
21
91
0
70
54
2
4
38
1.33
58937--58961
13
1.9
13
100
0
50
16
16
12
56
1.68
66175--66251
29
2.7
29
83
0
82
22
15
19
42
1.88
68099--68146
24
1.9
26
84
16
66
31
18
12
37
1.88
72994--73029
2
18.0
2
100
0
72
50
0
0
50
1.00
75044--75090
22
2.1
22
84
4
58
48
4
10
36
1.57
75095--75144
23
2.1
22
82
10
55
54
0
4
42
1.19
75239--75419
5
37.4
5
89
10
288
58
0
0
41
0.98
75239--75419
33
5.2
34
88
11
278
58
0
0
41
0.98
75239--75419
19
9.4
20
91
8
288
58
0
0
41
0.98

Tables:   1

The End!