Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002443.1 Hibiscus syriacus cultivar Beakdansim tig00005002_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 178042
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Found at i:305 original size:4 final size:4
Alignment explanation
Indices: 296--328 Score: 52
Period size: 4 Copynumber: 8.8 Consensus size: 4
286 CTAACCATTG
296 TTTA TTTA -TTA TTTA TTTA TTTA TTTA -TTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
329 CTCATATTCG
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
3 6 0.22
4 21 0.78
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:469 original size:4 final size:4
Alignment explanation
Indices: 460--494 Score: 52
Period size: 4 Copynumber: 8.8 Consensus size: 4
450 ACAGCTAATT
* *
460 TTTA TTTA TTTC TTTA CTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
495 TATGTTCGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.20, C:0.06, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:20949 original size:18 final size:18
Alignment explanation
Indices: 20926--20962 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
20916 AGCATTGTAT
*
20926 TCCAATGCTTCTGGAAAC
1 TCCAATGCTCCTGGAAAC
20944 TCCAATGCTCCTGGAAAC
1 TCCAATGCTCCTGGAAAC
20962 T
1 T
20963 GTCGAAGGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.27
Consensus pattern (18 bp):
TCCAATGCTCCTGGAAAC
Found at i:25627 original size:12 final size:12
Alignment explanation
Indices: 25602--25659 Score: 71
Period size: 12 Copynumber: 4.8 Consensus size: 12
25592 ACGAAGATAT
* *
25602 CAGAAATCAAAA
1 CAGAATTCAGAA
25614 CAGAATTCAGAA
1 CAGAATTCAGAA
* *
25626 CAGAATCCAGAT
1 CAGAATTCAGAA
*
25638 CAGAAATCAGAA
1 CAGAATTCAGAA
25650 CAGAATTCAG
1 CAGAATTCAG
25660 GTCATTTATC
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 38 1.00
ACGTcount: A:0.52, C:0.19, G:0.16, T:0.14
Consensus pattern (12 bp):
CAGAATTCAGAA
Found at i:25655 original size:24 final size:24
Alignment explanation
Indices: 25614--25696 Score: 96
Period size: 24 Copynumber: 3.5 Consensus size: 24
25604 GAAATCAAAA
* *
25614 CAGAATTCAGAACAGAATCCAGAT
1 CAGAAATCAGAACAGAATTCAGAT
*
25638 CAGAAATCAGAACAGAATTCAGGT
1 CAGAAATCAGAACAGAATTCAGAT
***
25662 CATTTATCAGAACAGAATTCA-AGT
1 CAGAAATCAGAACAGAATTCAGA-T
25686 CAGAAATCAGA
1 CAGAAATCAGA
25697 TAAAATATTT
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.46, C:0.18, G:0.17, T:0.19
Consensus pattern (24 bp):
CAGAAATCAGAACAGAATTCAGAT
Found at i:30417 original size:17 final size:17
Alignment explanation
Indices: 30397--30451 Score: 51
Period size: 17 Copynumber: 3.2 Consensus size: 17
30387 TTGTTTATAA
30397 TATTTTATGTACTTCAC
1 TATTTTATGTACTTCAC
* * *
30414 TA-TTAATGT-CTTTATAA
1 TATTTTATGTAC-TT-CAC
30431 TATTTTATGTACTTCAC
1 TATTTTATGTACTTCAC
30448 TATT
1 TATT
30452 AATGTCTACT
Statistics
Matches: 28, Mismatches: 6, Indels: 8
0.67 0.14 0.19
Matches are distributed among these distances:
15 1 0.04
16 8 0.29
17 10 0.36
18 8 0.29
19 1 0.04
ACGTcount: A:0.27, C:0.13, G:0.05, T:0.55
Consensus pattern (17 bp):
TATTTTATGTACTTCAC
Found at i:30433 original size:34 final size:34
Alignment explanation
Indices: 30390--30458 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
30380 ATATTTATTG
30390 TTTATAATATTTTATGTACTTCACTATTAATGTC
1 TTTATAATATTTTATGTACTTCACTATTAATGTC
30424 TTTATAATATTTTATGTACTTCACTATTAATGTC
1 TTTATAATATTTTATGTACTTCACTATTAATGTC
30458 T
1 T
30459 ACTCTACTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.29, C:0.12, G:0.06, T:0.54
Consensus pattern (34 bp):
TTTATAATATTTTATGTACTTCACTATTAATGTC
Found at i:33198 original size:34 final size:34
Alignment explanation
Indices: 33155--33223 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
33145 GACACAACAC
33155 GTGGCACCAATGACGCAACATCATTCGATTGGAT
1 GTGGCACCAATGACGCAACATCATTCGATTGGAT
*
33189 GTGGCACCAATGACGCGACATCATTCGATTGGAT
1 GTGGCACCAATGACGCAACATCATTCGATTGGAT
33223 G
1 G
33224 ATTAAATATA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (34 bp):
GTGGCACCAATGACGCAACATCATTCGATTGGAT
Found at i:43237 original size:2 final size:2
Alignment explanation
Indices: 43230--43262 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
43220 ACAAATACAA
43230 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
43263 CGGTTATAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:44482 original size:23 final size:23
Alignment explanation
Indices: 44384--44482 Score: 92
Period size: 23 Copynumber: 4.3 Consensus size: 23
44374 CAAAGTGCTA
*
44384 CGTAGAAATGTCCTGAAGGACCA
1 CGTAGAAATGTCCTGAAGGACCG
* * * *
44407 CATAGATATATCCCGAAGGACCG
1 CGTAGAAATGTCCTGAAGGACCG
*
44430 CGTAGAAATGT-CTCGAAGGACCA
1 CGTAGAAATGTCCT-GAAGGACCG
* * * *
44453 TGGAGAATTGTCCTGAAGGACTG
1 CGTAGAAATGTCCTGAAGGACCG
44476 CGTAGAA
1 CGTAGAA
44483 CCCTCGACTC
Statistics
Matches: 57, Mismatches: 17, Indels: 4
0.73 0.22 0.05
Matches are distributed among these distances:
22 1 0.02
23 54 0.95
24 2 0.04
ACGTcount: A:0.33, C:0.20, G:0.27, T:0.19
Consensus pattern (23 bp):
CGTAGAAATGTCCTGAAGGACCG
Found at i:44595 original size:16 final size:16
Alignment explanation
Indices: 44574--44623 Score: 64
Period size: 19 Copynumber: 2.9 Consensus size: 16
44564 TAGCTTATAT
44574 CACATAGATCATGTAA
1 CACATAGATCATGTAA
*
44590 CACATAGGATGAAATGTAA
1 CACATA-GAT--CATGTAA
44609 CACATAGATCATGTA
1 CACATAGATCATGTA
44624 GAACAGTGCA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
16 11 0.38
17 3 0.10
18 3 0.10
19 12 0.41
ACGTcount: A:0.44, C:0.16, G:0.16, T:0.24
Consensus pattern (16 bp):
CACATAGATCATGTAA
Found at i:49538 original size:12 final size:12
Alignment explanation
Indices: 49521--49546 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
49511 GGAATGGTTC
49521 CTTCCTCTACCT
1 CTTCCTCTACCT
49533 CTTCCTCTACCT
1 CTTCCTCTACCT
49545 CT
1 CT
49547 CTTAGATACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.50, G:0.00, T:0.42
Consensus pattern (12 bp):
CTTCCTCTACCT
Found at i:54333 original size:21 final size:23
Alignment explanation
Indices: 54285--54335 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
54275 TTCCCCTGTG
54285 GGGGGGAATCGGTTCCCCTTCAA
1 GGGGGGAATCGGTTCCCCTTCAA
*
54308 AGGGGGAATCGGTT-CCC-TCAA
1 GGGGGGAATCGGTTCCCCTTCAA
54329 GGGGGGA
1 GGGGGGA
54336 TCGATTCTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
21 10 0.38
22 3 0.12
23 13 0.50
ACGTcount: A:0.20, C:0.22, G:0.41, T:0.18
Consensus pattern (23 bp):
GGGGGGAATCGGTTCCCCTTCAA
Found at i:61269 original size:16 final size:16
Alignment explanation
Indices: 61250--61299 Score: 55
Period size: 19 Copynumber: 2.9 Consensus size: 16
61240 GACATATGAT
61250 CACATAGATCATGTAA
1 CACATAGATCATGTAA
*
61266 CACATAGGATGAAATGTAA
1 CACATA-GAT--CATGTAA
*
61285 CACATAAATCATGTA
1 CACATAGATCATGTA
61300 GAACAATGCA
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
16 11 0.39
17 3 0.11
18 2 0.07
19 12 0.43
ACGTcount: A:0.46, C:0.16, G:0.14, T:0.24
Consensus pattern (16 bp):
CACATAGATCATGTAA
Found at i:61938 original size:20 final size:20
Alignment explanation
Indices: 61853--61944 Score: 55
Period size: 20 Copynumber: 4.5 Consensus size: 20
61843 GATACCCTTG
* *
61853 GTATCGATGCTACTTCTTC-G
1 GTATCGATACTA-TTCTTCTA
*
61873 GTATCGATATTATTCTTCTA
1 GTATCGATACTATTCTTCTA
* * *
61893 -TTTCGTATAAT-TTCATCTTA
1 GTATCG-ATACTATTCTTC-TA
61913 TGGTATCGATACTATTCTTCTA
1 --GTATCGATACTATTCTTCTA
*
61935 GTATAGATAC
1 GTATCGATAC
61945 CAACACCCAA
Statistics
Matches: 55, Mismatches: 10, Indels: 14
0.70 0.13 0.18
Matches are distributed among these distances:
19 15 0.27
20 25 0.45
22 6 0.11
23 9 0.16
ACGTcount: A:0.24, C:0.17, G:0.13, T:0.46
Consensus pattern (20 bp):
GTATCGATACTATTCTTCTA
Found at i:63633 original size:2 final size:2
Alignment explanation
Indices: 63616--63717 Score: 88
Period size: 2 Copynumber: 51.0 Consensus size: 2
63606 TTATAGTATT
*
63616 TA TA T- TA TA TA GTA TA TA TGA TA -A TA TA TA TCA AA TA TA -A
1 TA TA TA TA TA TA -TA TA TA T-A TA TA TA TA TA T-A TA TA TA TA
* * *
63656 TA TA TA TA GTT TT TGA -A AA TA -A TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA -TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA
63698 TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA
63718 ATTTTTGAAA
Statistics
Matches: 85, Mismatches: 5, Indels: 20
0.77 0.05 0.18
Matches are distributed among these distances:
1 5 0.06
2 74 0.87
3 6 0.07
ACGTcount: A:0.49, C:0.01, G:0.04, T:0.46
Consensus pattern (2 bp):
TA
Found at i:63633 original size:14 final size:13
Alignment explanation
Indices: 63604--63717 Score: 71
Period size: 12 Copynumber: 9.0 Consensus size: 13
63594 CAAGGATTTT
*
63604 TATTATAGTATTTA
1 TATTATA-TATATA
63618 TATTATATAGTATA
1 TATTATATA-TATA
*
63632 TATGATA-ATATA
1 TATTATATATATA
* *
63644 TATCAAATATA-A
1 TATTATATATATA
* *
63656 TA-TATATAGTTTT
1 TATTATATA-TATA
**
63669 TGAAAATA-ATATA
1 T-ATTATATATATA
63682 TA-TATATATATA
1 TATTATATATATA
63694 TA-TATATATATA
1 TATTATATATATA
63706 TA-TATATATATA
1 TATTATATATATA
63718 ATTTTTGAAA
Statistics
Matches: 81, Mismatches: 12, Indels: 16
0.74 0.11 0.15
Matches are distributed among these distances:
11 7 0.09
12 43 0.53
13 10 0.12
14 18 0.22
15 3 0.04
ACGTcount: A:0.47, C:0.01, G:0.04, T:0.47
Consensus pattern (13 bp):
TATTATATATATA
Found at i:63688 original size:54 final size:55
Alignment explanation
Indices: 63622--63728 Score: 157
Period size: 54 Copynumber: 2.0 Consensus size: 55
63612 TATTTATATT
*
63622 ATATAGTATATATGATA-ATATATATCAAATATA-ATATATATAGTTTTTGAAAATA
1 ATATAGTATATAT-ATATATATATAT-AAATATATATATATATAATTTTTGAAAATA
*
63677 ATATA-TATATATATATATATATATATATATATATATATATAATTTTTGAAAA
1 ATATAGTATATATATATATATATATAAATATATATATATATAATTTTTGAAAA
63729 CATATTATAT
Statistics
Matches: 48, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
53 9 0.19
54 34 0.71
55 5 0.10
ACGTcount: A:0.50, C:0.01, G:0.05, T:0.45
Consensus pattern (55 bp):
ATATAGTATATATATATATATATATAAATATATATATATATAATTTTTGAAAATA
Found at i:63738 original size:54 final size:56
Alignment explanation
Indices: 63616--63789 Score: 175
Period size: 51 Copynumber: 3.1 Consensus size: 56
63606 TTATAGTATT
*
63616 TATATTATATAGTATATATGATAATATATATCAAATATAATATATATAGTTTTTGAAAATAA
1 TATA-TATATA-TATATATGAT-ATATATAT-ATATAT-ATATATATAGTTTTTGAAAA-AA
*
63678 TATATATATATATATAT-ATATATATATATATATATATATA-A-TTTTTGAAAACA
1 TATATATATATATATATGATATATATATATATATATATATATAGTTTTTGAAAAAA
* * * *
63731 TAT-TATATA-ATTTTTGA-AAATATA-ATATATAT-TATATAGTTTTTTAAAAAA
1 TATATATATATATATATGATATATATATATATATATATATATAGTTTTTGAAAAAA
*
63782 TATGTATA
1 TATATATA
63790 GTCTACATAT
Statistics
Matches: 101, Mismatches: 7, Indels: 18
0.80 0.06 0.14
Matches are distributed among these distances:
49 4 0.04
50 9 0.09
51 23 0.23
52 11 0.11
53 4 0.04
54 10 0.10
55 1 0.01
56 7 0.07
57 5 0.05
58 8 0.08
59 2 0.02
60 7 0.07
61 6 0.06
62 4 0.04
ACGTcount: A:0.48, C:0.01, G:0.05, T:0.47
Consensus pattern (56 bp):
TATATATATATATATATGATATATATATATATATATATATATAGTTTTTGAAAAAA
Found at i:63753 original size:20 final size:22
Alignment explanation
Indices: 63707--63761 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
63697 ATATATATAT
63707 ATATATATATAATTTTTGAAAAC
1 ATAT-TATATAATTTTTGAAAAC
*
63730 ATATTATATAATTTTTGAAAAT
1 ATATTATATAATTTTTGAAAAC
*
63752 ATAATATATA
1 ATATTATATA
63762 TTATATAGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
22 26 0.87
23 4 0.13
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (22 bp):
ATATTATATAATTTTTGAAAAC
Found at i:76335 original size:17 final size:17
Alignment explanation
Indices: 76313--76350 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
76303 ACCAAAAGCC
76313 TTTTTTC-CCCTTTGTTT
1 TTTTTTCTCCCTTT-TTT
*
76330 TTTTTTCTCTCTTTTTT
1 TTTTTTCTCCCTTTTTT
76347 TTTT
1 TTTT
76351 GTTTTCTGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.00, C:0.18, G:0.03, T:0.79
Consensus pattern (17 bp):
TTTTTTCTCCCTTTTTT
Found at i:77712 original size:29 final size:29
Alignment explanation
Indices: 77680--77777 Score: 85
Period size: 29 Copynumber: 3.4 Consensus size: 29
77670 TAGTATCATG
77680 TTTAAATTTAAATATTCATTAATTAAAAC
1 TTTAAATTTAAATATTCATTAATTAAAAC
* * * * **
77709 TTT-AATTTTAAT-TTTA-AAATAGTATCATG
1 TTTAAATTTAAATATTCATTAAT--TA-AAAC
77738 TTTAAATTTAAATATTCATTAATTAAAAC
1 TTTAAATTTAAATATTCATTAATTAAAAC
*
77767 TTTAATTTTAA
1 TTTAAATTTAA
77778 TTTAGTTATA
Statistics
Matches: 50, Mismatches: 13, Indels: 12
0.67 0.17 0.16
Matches are distributed among these distances:
26 3 0.06
27 3 0.06
28 10 0.20
29 18 0.36
30 10 0.20
31 3 0.06
32 3 0.06
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.49
Consensus pattern (29 bp):
TTTAAATTTAAATATTCATTAATTAAAAC
Found at i:77720 original size:58 final size:58
Alignment explanation
Indices: 77657--77780 Score: 230
Period size: 58 Copynumber: 2.1 Consensus size: 58
77647 TGTTTAAATG
**
77657 TTTAATTTTTTAATAGTATCATGTTTAAATTTAAATATTCATTAATTAAAACTTTAAT
1 TTTAATTTTAAAATAGTATCATGTTTAAATTTAAATATTCATTAATTAAAACTTTAAT
77715 TTTAATTTTAAAATAGTATCATGTTTAAATTTAAATATTCATTAATTAAAACTTTAAT
1 TTTAATTTTAAAATAGTATCATGTTTAAATTTAAATATTCATTAATTAAAACTTTAAT
77773 TTTAATTT
1 TTTAATTT
77781 AGTTATAGAT
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 64 1.00
ACGTcount: A:0.40, C:0.05, G:0.03, T:0.52
Consensus pattern (58 bp):
TTTAATTTTAAAATAGTATCATGTTTAAATTTAAATATTCATTAATTAAAACTTTAAT
Found at i:78521 original size:37 final size:37
Alignment explanation
Indices: 78471--78603 Score: 203
Period size: 37 Copynumber: 3.6 Consensus size: 37
78461 ATTTTCGTCC
78471 TACTAGGATTCAAACTCCTAAAAATAAGATAAAATTT
1 TACTAGGATTCAAACTCCTAAAAATAAGATAAAATTT
78508 TACTAGGATTCAAACTCCTAAAAATAAGATAAAATTT
1 TACTAGGATTCAAACTCCTAAAAATAAGATAAAATTT
* * * *
78545 TACTAGGATTCAAACTCCTAAAAATAGGATAGAGTTC
1 TACTAGGATTCAAACTCCTAAAAATAAGATAAAATTT
* * *
78582 TACTAAGATTTAAATTCCTAAA
1 TACTAGGATTCAAACTCCTAAA
78604 GATAGGATCC
Statistics
Matches: 89, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 89 1.00
ACGTcount: A:0.46, C:0.14, G:0.10, T:0.30
Consensus pattern (37 bp):
TACTAGGATTCAAACTCCTAAAAATAAGATAAAATTT
Found at i:79007 original size:18 final size:17
Alignment explanation
Indices: 78968--79010 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
78958 ATTATATGGA
78968 TATT-TTATTCATTTAT
1 TATTATTATTCATTTAT
*
78984 TTTTATTATTCATGTTAT
1 TATTATTATTCAT-TTAT
79002 TATTATTAT
1 TATTATTAT
79011 ATGTATATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 3 0.13
17 8 0.35
18 12 0.52
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.67
Consensus pattern (17 bp):
TATTATTATTCATTTAT
Found at i:79098 original size:24 final size:23
Alignment explanation
Indices: 79062--79112 Score: 59
Period size: 25 Copynumber: 2.2 Consensus size: 23
79052 TGTTTATTTG
* *
79062 TTTTATTTATTTTCTT-TTTCTT
1 TTTTATTTATTTTATTATTTATT
79084 TTTTATATATATTTTATTATTTATT
1 TTTTAT-T-TATTTTATTATTTATT
79109 TTTT
1 TTTT
79113 TACTTACTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 6 0.25
23 1 0.04
24 8 0.33
25 9 0.38
ACGTcount: A:0.18, C:0.04, G:0.00, T:0.78
Consensus pattern (23 bp):
TTTTATTTATTTTATTATTTATT
Found at i:83467 original size:183 final size:182
Alignment explanation
Indices: 83159--83694 Score: 932
Period size: 183 Copynumber: 2.9 Consensus size: 182
83149 ATTAAATCCG
*
83159 TAAAGCTGAGCTATTCCAATAAGGCAATTGGTTATAGAGGAAACTCGAAAGCCCTGGCTTTATGA
1 TAAAGCTGAGCTATTCCACTAAGGCAATTGGTTATAGAGGAAACTCGAAAGCCCTGGCTTTATGA
* **
83224 ATAGATTATGTTCAAACTATGACACTGCTCATACACTTGGCAATTCGGTGTTTGCTCCACTGCTT
66 ATAGATTATGTTCAAACTATGACATTGCTCGGACACTTGGCAATTCGGTGTTTGCTCCACTGCTT
83289 TTGTCAGTCTAAAGACTTTGTGATGAGATGAACCCTTCAGTGATTTGTCCCTC
131 TTGTCAGTC-AAAGACTTTGTGATGAGATGAACCCTTCAGTGATTTGTCCCTC
83342 TAAAGCTGAGCTATTCCACTAAGGCAATTGGTTATAGAGGAAACTCGAAAGCCCTGGCTTTATGA
1 TAAAGCTGAGCTATTCCACTAAGGCAATTGGTTATAGAGGAAACTCGAAAGCCCTGGCTTTATGA
83407 ATAGATTATGTTCAAACTATGACATTGCTCGGACACTTGGCAATTCGGTGTTTGCTCCACTGCTT
66 ATAGATTATGTTCAAACTATGACATTGCTCGGACACTTGGCAATTCGGTGTTTGCTCCACTGCTT
* *
83472 TTGTCAGGCCAAAGACTTTGTGATGAGACGAACCCTTCAGTGATTTGTCCCTC
131 TTGTCA-GTCAAAGACTTTGTGATGAGATGAACCCTTCAGTGATTTGTCCCTC
*
83525 TAAAGCTGAGCTATTCCACTAAGGTAATTGGTTATAGAGGAAACTCGAAAGCCCTGGCTTTATGA
1 TAAAGCTGAGCTATTCCACTAAGGCAATTGGTTATAGAGGAAACTCGAAAGCCCTGGCTTTATGA
**
83590 ATAGATTACATTCAAA-TCATGACATTGCTCGGACACTTGGCAATTCGGTGTTTGCTCCACTGCT
66 ATAGATTATGTTCAAACT-ATGACATTGCTCGGACACTTGGCAATTCGGTGTTTGCTCCACTGCT
*
83654 TTTGTCAGGTCAAAGACTTTGTGATGAGATGAA-ACTTCAGT
130 TTTGTCA-GTCAAAGACTTTGTGATGAGATGAACCCTTCAGT
83695 TAAACCTGAT
Statistics
Matches: 339, Mismatches: 12, Indels: 5
0.95 0.03 0.01
Matches are distributed among these distances:
182 8 0.02
183 329 0.97
184 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.31
Consensus pattern (182 bp):
TAAAGCTGAGCTATTCCACTAAGGCAATTGGTTATAGAGGAAACTCGAAAGCCCTGGCTTTATGA
ATAGATTATGTTCAAACTATGACATTGCTCGGACACTTGGCAATTCGGTGTTTGCTCCACTGCTT
TTGTCAGTCAAAGACTTTGTGATGAGATGAACCCTTCAGTGATTTGTCCCTC
Found at i:84880 original size:36 final size:35
Alignment explanation
Indices: 84840--84947 Score: 101
Period size: 36 Copynumber: 3.0 Consensus size: 35
84830 CACTCAAATT
84840 TGTTTTTCTTAAAACATACTTTGTCTCACTTGAGAC
1 TGTTTTTCTTAAAACATA-TTTGTCTCACTTGAGAC
* * * ** *
84876 TGTTTTTCTCGAAAGA-ATATTTATTTCACTCAAGAT
1 TGTTTTTCT-TAAA-ACATATTTGTCTCACTTGAGAC
* *
84912 TGTTTTTCTTAAAACAAGATTTGTCTCGCTTGAGAC
1 TGTTTTTCTTAAAAC-ATATTTGTCTCACTTGAGAC
84948 CATTTTCACT
Statistics
Matches: 54, Mismatches: 14, Indels: 8
0.71 0.18 0.11
Matches are distributed among these distances:
34 1 0.02
35 3 0.06
36 43 0.80
37 6 0.11
38 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.13, T:0.44
Consensus pattern (35 bp):
TGTTTTTCTTAAAACATATTTGTCTCACTTGAGAC
Found at i:84916 original size:72 final size:73
Alignment explanation
Indices: 84824--84965 Score: 191
Period size: 72 Copynumber: 2.0 Consensus size: 73
84814 ATGCAGATGA
* ** *
84824 TTATCTCACTCAAATTTGTTTTTCTTAAAACATA-CTTTGTCTCACTTGAGACTGTTTT-TCTCG
1 TTATCTCACTCAAATTTGTTTTTCTTAAAACA-AGATTTGTCTCACTTGAGACCATTTTCACTCG
84887 AAAGAATAT
65 AAAGAATAT
* *
84896 TTATTTCACTCAAGA-TTGTTTTTCTTAAAACAAGATTTGTCTCGCTTGAGACCATTTTCACTCG
1 TTATCTCACTCAA-ATTTGTTTTTCTTAAAACAAGATTTGTCTCACTTGAGACCATTTTCACTCG
84960 AAAGAA
65 AAAGAA
84966 GGCATTTCAT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
71 1 0.02
72 49 0.80
73 11 0.18
ACGTcount: A:0.29, C:0.18, G:0.11, T:0.42
Consensus pattern (73 bp):
TTATCTCACTCAAATTTGTTTTTCTTAAAACAAGATTTGTCTCACTTGAGACCATTTTCACTCGA
AAGAATAT
Found at i:85148 original size:39 final size:39
Alignment explanation
Indices: 85091--85165 Score: 98
Period size: 39 Copynumber: 1.9 Consensus size: 39
85081 CCTTGAAATT
* *
85091 AATTTTTTCTCTCCTGAGATAGTTTCCCTCGAAACAGAA
1 AATTTTGTCTCTCCTGAGACAGTTTCCCTCGAAACAGAA
* *
85130 AATTTTGTCTC-CCTTGAGACAGTTTCTCTTGAAACA
1 AATTTTGTCTCTCC-TGAGACAGTTTCCCTCGAAACA
85166 TAAACATTGA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
38 2 0.06
39 29 0.94
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.37
Consensus pattern (39 bp):
AATTTTGTCTCTCCTGAGACAGTTTCCCTCGAAACAGAA
Found at i:85234 original size:105 final size:104
Alignment explanation
Indices: 85068--85386 Score: 518
Period size: 105 Copynumber: 3.1 Consensus size: 104
85058 ACAGTTTCTC
* *
85068 TTGAAAACATTTCCCTTGAAATTAATTTTTTCTCTCCTGAGATAGTTTCCCTCGAAACAGAAAAT
1 TTGAAAACATTTCCCTTGAAATGAATTTTTTCTCTCTTGAGATAGTTTCCCTCGAAACAGAAAAT
85133 TTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACA
66 TTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACA
*
85172 TTGAAAACATTTCCCTTGAAATGATTTTTTTTCTCTCTTGAGATAGTTTCCCTCGAAACAGAAAA
1 TTGAAAACATTTCCCTTGAAATGA-ATTTTTTCTCTCTTGAGATAGTTTCCCTCGAAACAGAAAA
*
85237 TTTTGTCTCCCTTGAGACAATTTCTCTTGAAACATAAACA
65 TTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACA
* * *
85277 TTGAAAACATTTCCCTTGAAATGAATTTTATCTCGCTTGAGATAGTTTCCCTTGAAAC-G--AAT
1 TTGAAAACATTTCCCTTGAAATGAATTTTTTCTCTCTTGAGATAGTTTCCCTCGAAACAGAAAAT
** *
85339 TTTGTCTCCCTTGAGACAGTTTCTCTCCAAACATAAACT
66 TTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACA
85378 TTGAAAACA
1 TTGAAAACA
85387 ATTTAACGAA
Statistics
Matches: 202, Mismatches: 12, Indels: 5
0.92 0.05 0.02
Matches are distributed among these distances:
101 47 0.23
103 1 0.00
104 53 0.26
105 101 0.50
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.37
Consensus pattern (104 bp):
TTGAAAACATTTCCCTTGAAATGAATTTTTTCTCTCTTGAGATAGTTTCCCTCGAAACAGAAAAT
TTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACA
Found at i:85333 original size:36 final size:36
Alignment explanation
Indices: 85286--85361 Score: 116
Period size: 36 Copynumber: 2.1 Consensus size: 36
85276 ATTGAAAACA
* * *
85286 TTTCCCTTGAAATGAATTTTATCTCGCTTGAGATAG
1 TTTCCCTTGAAACGAATTTTATCTCCCTTGAGACAG
*
85322 TTTCCCTTGAAACGAATTTTGTCTCCCTTGAGACAG
1 TTTCCCTTGAAACGAATTTTATCTCCCTTGAGACAG
85358 TTTC
1 TTTC
85362 TCTCCAAACA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.22, C:0.21, G:0.16, T:0.41
Consensus pattern (36 bp):
TTTCCCTTGAAACGAATTTTATCTCCCTTGAGACAG
Found at i:85769 original size:105 final size:105
Alignment explanation
Indices: 85561--86296 Score: 1122
Period size: 105 Copynumber: 7.0 Consensus size: 105
85551 ATATCGTGAC
* * * * * * *
85561 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGTTGGTTGTCAACAAATAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAAC-AACAACTTCTC
* *
85626 AATTTCAGAGCCAATTTCAACTTCCCAATGAAGGATATTGG
65 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
85667 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCTCA
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCTCA
85732 ATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
66 ATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * *
85772 ACTTCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAATAACAACTTCCCA
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCTCA
*
85837 ATCTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
66 ATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* *
85877 ACTCTAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCCCA
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCTCA
* *
85942 ATCTCAGTGCCAATTTCAACTTCACAACGAAGGATATTGG
66 ATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * * *
85982 ACTCCAGACAACGCAAGTTCAACTTCACGATGAAAGGACCGCTGCTTATCAACAACAACTTCCCA
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCTCA
*
86047 ATCTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
66 ATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * *
86087 ACTCCAGACAACGCAAGTTCAACTCCACGACGAATGGACCGTTGCTTGTCAACAA-AA-TT-TC-
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCTCA
* *
86148 A-TTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGG
66 ATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * * *
86187 ACTCGAGACAACACAAGTTCAACTTCACGACGAAGGGACCGTTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAAC-AACAACTTCTC
* *
86252 AATTTCATAGCCAATTTCAACTTCACAACGGAGGATATTGG
65 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
86293 ACTC
1 ACTC
86297 GGAACAATAC
Statistics
Matches: 584, Mismatches: 40, Indels: 12
0.92 0.06 0.02
Matches are distributed among these distances:
100 83 0.14
101 3 0.01
102 3 0.01
103 4 0.01
104 4 0.01
105 402 0.69
106 85 0.15
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (105 bp):
ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCTCA
ATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
Found at i:86890 original size:37 final size:37
Alignment explanation
Indices: 86839--86943 Score: 138
Period size: 37 Copynumber: 2.8 Consensus size: 37
86829 CATTTTCGTC
86839 CTGCTAGGATTCAAACTCCTAAAAATAGGATAAAATT
1 CTGCTAGGATTCAAACTCCTAAAAATAGGATAAAATT
* * *
86876 TTGCTAGGATTCAAACTCCTAAAAATAGGATAGAGTT
1 CTGCTAGGATTCAAACTCCTAAAAATAGGATAAAATT
* * * * *
86913 CTACTAAGATTTAAATTCCTAAAGATAGGAT
1 CTGCTAGGATTCAAACTCCTAAAAATAGGAT
86944 CCACAAGCAC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.41, C:0.14, G:0.15, T:0.30
Consensus pattern (37 bp):
CTGCTAGGATTCAAACTCCTAAAAATAGGATAAAATT
Found at i:87402 original size:22 final size:21
Alignment explanation
Indices: 87367--87441 Score: 64
Period size: 22 Copynumber: 3.4 Consensus size: 21
87357 TTATTCGTAC
87367 TTTGTTATTA-TTATTTTGTTTA
1 TTTGTT-TTATTTATTTT-TTTA
87389 TTTGTTTTATTTATTTTCTTT-
1 TTTGTTTTATTTATTTT-TTTA
* *
87410 TTCTTTTTTATATATATTTTATTA
1 TT-TGTTTTAT-T-TATTTTTTTA
87434 TTTGTTTT
1 TTTGTTTT
87442 TTACTTACTA
Statistics
Matches: 44, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
21 5 0.11
22 23 0.52
23 8 0.18
24 8 0.18
ACGTcount: A:0.16, C:0.03, G:0.05, T:0.76
Consensus pattern (21 bp):
TTTGTTTTATTTATTTTTTTA
Found at i:87429 original size:24 final size:23
Alignment explanation
Indices: 87393--87444 Score: 61
Period size: 25 Copynumber: 2.2 Consensus size: 23
87383 TGTTTATTTG
*
87393 TTTTATTTATTTTCTT-TTTCTT
1 TTTTATTTATTTTATTATTTCTT
*
87415 TTTTATATATATTTTATTATTTGTT
1 TTTTAT-T-TATTTTATTATTTCTT
87440 TTTTA
1 TTTTA
87445 CTTACTATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 6 0.24
23 1 0.04
24 8 0.32
25 10 0.40
ACGTcount: A:0.17, C:0.04, G:0.02, T:0.77
Consensus pattern (23 bp):
TTTTATTTATTTTATTATTTCTT
Found at i:87453 original size:26 final size:24
Alignment explanation
Indices: 87393--87466 Score: 64
Period size: 26 Copynumber: 3.0 Consensus size: 24
87383 TGTTTATTTG
*
87393 TTTTAT-T-TATTTTCTTTTTCTT
1 TTTTATATATATTTTATTTTTCTT
*
87415 TTTTATATATATTTTATTATTTGTT
1 TTTTATATATATTTTATT-TTTCTT
*
87440 TTTTACT-TACTATTTTATCTTTGCTT
1 TTTTA-TATA-TATTTTAT-TTTTCTT
87466 T
1 T
87467 CTTCATTTTA
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
22 6 0.14
23 1 0.02
24 8 0.19
25 12 0.29
26 14 0.33
27 1 0.02
ACGTcount: A:0.16, C:0.08, G:0.03, T:0.73
Consensus pattern (24 bp):
TTTTATATATATTTTATTTTTCTT
Found at i:88687 original size:32 final size:32
Alignment explanation
Indices: 88650--88713 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
88640 TCCCAAAGGA
*
88650 CCTGTCCATATGTCCCGAAGGACATAGGTAAT
1 CCTGTCCATATGTCCCGAAGAACATAGGTAAT
*
88682 CCTGTCCATATGTCCCGGAGAACATAGGTAAT
1 CCTGTCCATATGTCCCGAAGAACATAGGTAAT
88714 GTAACATCCC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (32 bp):
CCTGTCCATATGTCCCGAAGAACATAGGTAAT
Found at i:90494 original size:31 final size:30
Alignment explanation
Indices: 90454--90531 Score: 84
Period size: 30 Copynumber: 2.6 Consensus size: 30
90444 CCCATGTTAT
* *
90454 TTCGAGACATATAGATAGTTTACCTATGTCC
1 TTCGGGACATATAGACAG-TTACCTATGTCC
** *
90485 TTCGGGACATACGGACAGTTACCTATGTTC
1 TTCGGGACATATAGACAGTTACCTATGTCC
* *
90515 TTCGGAACATATGGACA
1 TTCGGGACATATAGACA
90532 AGTCCTTTGG
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
30 26 0.65
31 14 0.35
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.31
Consensus pattern (30 bp):
TTCGGGACATATAGACAGTTACCTATGTCC
Found at i:90508 original size:30 final size:30
Alignment explanation
Indices: 90473--90531 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
90463 TATAGATAGT
*
90473 TTACCTATGTCCTTCGGGACATACGGACAG
1 TTACCTATGTCCTTCGGAACATACGGACAG
* *
90503 TTACCTATGTTCTTCGGAACATATGGACA
1 TTACCTATGTCCTTCGGAACATACGGACA
90532 AGTCCTTTGG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (30 bp):
TTACCTATGTCCTTCGGAACATACGGACAG
Found at i:92109 original size:2 final size:2
Alignment explanation
Indices: 92102--92131 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
92092 GTGGGCTTTG
92102 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
92132 TGTACACTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:102748 original size:20 final size:20
Alignment explanation
Indices: 102723--102772 Score: 100
Period size: 20 Copynumber: 2.5 Consensus size: 20
102713 AGTTTCTACG
102723 CAAGAGTATCGATACTCTTT
1 CAAGAGTATCGATACTCTTT
102743 CAAGAGTATCGATACTCTTT
1 CAAGAGTATCGATACTCTTT
102763 CAAGAGTATC
1 CAAGAGTATC
102773 AATATTTTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (20 bp):
CAAGAGTATCGATACTCTTT
Found at i:102849 original size:19 final size:20
Alignment explanation
Indices: 102803--102851 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
102793 CGAAACTCAC
102803 AGAAAGTATCGAAACTTGTTT
1 AGAAAGTATCGAAACTTG-TT
102824 A-AAAGTATC-AATACTTG-T
1 AGAAAGTATCGAA-ACTTGTT
102842 AGAAAGTATC
1 AGAAAGTATC
102852 CCAACACTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
18 2 0.08
19 10 0.38
20 13 0.50
21 1 0.04
ACGTcount: A:0.43, C:0.10, G:0.16, T:0.31
Consensus pattern (20 bp):
AGAAAGTATCGAAACTTGTT
Found at i:110088 original size:64 final size:63
Alignment explanation
Indices: 109933--110088 Score: 276
Period size: 63 Copynumber: 2.5 Consensus size: 63
109923 CCATTAGTGC
** *
109933 ATCGATGCATAAGTAGTGCATCGATACACCCCCTTAAAATGAAAACATCGAAGGTGATTTTGT
1 ATCGATGCATGGGTAGTGCATCGATGCACCCCCTTAAAATGAAAACATCGAAGGTGATTTTGT
109996 ATCGATGCATGGGTAGTGCATCGATGCACCCCCTTAAAATGAAAACATCGAAGGTGATTTTTGT
1 ATCGATGCATGGGTAGTGCATCGATGCACCCCCTTAAAATGAAAACATCGAAGGTGA-TTTTGT
110060 ATCGATGCATGGGTAGTGCATCGATGCAC
1 ATCGATGCATGGGTAGTGCATCGATGCAC
110089 ATGTTAAGGG
Statistics
Matches: 89, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
63 54 0.61
64 35 0.39
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (63 bp):
ATCGATGCATGGGTAGTGCATCGATGCACCCCCTTAAAATGAAAACATCGAAGGTGATTTTGT
Found at i:113217 original size:32 final size:32
Alignment explanation
Indices: 113172--113261 Score: 126
Period size: 32 Copynumber: 2.8 Consensus size: 32
113162 AGCTTGTGTG
*
113172 ATGCATAGCAGAGTCAATATTGCATTCAAATA
1 ATGCATAGAAGAGTCAATATTGCATTCAAATA
* * * *
113204 ATGCATAGTAGAGTCAGTATTGTATTCAGATA
1 ATGCATAGAAGAGTCAATATTGCATTCAAATA
*
113236 ATGCATAGAAGAGTTAATATTGCATT
1 ATGCATAGAAGAGTCAATATTGCATT
113262 TAGACAGTGC
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 50 1.00
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32
Consensus pattern (32 bp):
ATGCATAGAAGAGTCAATATTGCATTCAAATA
Found at i:120782 original size:19 final size:19
Alignment explanation
Indices: 120760--120797 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
120750 CAAGCGCTCA
120760 ACGGAACACCTTCATGATT
1 ACGGAACACCTTCATGATT
120779 ACGGAACACCTTCATGATT
1 ACGGAACACCTTCATGATT
120798 CCTTTCTGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (19 bp):
ACGGAACACCTTCATGATT
Found at i:122522 original size:24 final size:24
Alignment explanation
Indices: 122490--122545 Score: 112
Period size: 24 Copynumber: 2.3 Consensus size: 24
122480 CTATTCATTC
122490 GCTTCAATTGAGCTCAAATTTTAG
1 GCTTCAATTGAGCTCAAATTTTAG
122514 GCTTCAATTGAGCTCAAATTTTAG
1 GCTTCAATTGAGCTCAAATTTTAG
122538 GCTTCAAT
1 GCTTCAAT
122546 CGAACTTCTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.38
Consensus pattern (24 bp):
GCTTCAATTGAGCTCAAATTTTAG
Found at i:122803 original size:30 final size:30
Alignment explanation
Indices: 122767--122832 Score: 96
Period size: 30 Copynumber: 2.2 Consensus size: 30
122757 AGTGAACCGG
*
122767 CGGTTCAAACCGGTTATGTCGGTTTTCAGC
1 CGGTTCAAACCGGTTATCTCGGTTTTCAGC
** *
122797 CGGTTCACCCCGGTTTTCTCGGTTTTCAGC
1 CGGTTCAAACCGGTTATCTCGGTTTTCAGC
122827 CGGTTC
1 CGGTTC
122833 TTTCGGTTCT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.11, C:0.29, G:0.26, T:0.35
Consensus pattern (30 bp):
CGGTTCAAACCGGTTATCTCGGTTTTCAGC
Found at i:125598 original size:14 final size:15
Alignment explanation
Indices: 125579--125607 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
125569 CGTTGCCTTG
125579 ATTTTCATAT-TTCT
1 ATTTTCATATATTCT
125593 ATTTTCATATATTCT
1 ATTTTCATATATTCT
125608 CTGTTCTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.24, C:0.14, G:0.00, T:0.62
Consensus pattern (15 bp):
ATTTTCATATATTCT
Found at i:128150 original size:3 final size:3
Alignment explanation
Indices: 128142--128186 Score: 74
Period size: 3 Copynumber: 15.0 Consensus size: 3
128132 ATTTATTTAT
128142 TTA TTA TTA TTA TTA TTA TTA TTA -TA TATA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA
128187 AAAAATAATT
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
2 2 0.05
3 35 0.88
4 3 0.08
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:130418 original size:42 final size:42
Alignment explanation
Indices: 130358--130454 Score: 171
Period size: 42 Copynumber: 2.4 Consensus size: 42
130348 TTAAAAATTC
130358 ATATA-TTA-TATTTATAATTCTTTCTTTTCAAAAATTTTTT
1 ATATACTTATTATTTATAATTCTTTCTTTTCAAAAATTTTTT
*
130398 ATATACTTATTATTTATAATTCTTTCTTTTCAGAAATTTTTT
1 ATATACTTATTATTTATAATTCTTTCTTTTCAAAAATTTTTT
130440 ATATACTTATTATTT
1 ATATACTTATTATTT
130455 TTATAGTATT
Statistics
Matches: 54, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
40 5 0.09
41 3 0.06
42 46 0.85
ACGTcount: A:0.31, C:0.08, G:0.01, T:0.60
Consensus pattern (42 bp):
ATATACTTATTATTTATAATTCTTTCTTTTCAAAAATTTTTT
Found at i:133774 original size:15 final size:16
Alignment explanation
Indices: 133754--133783 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
133744 CAATACCTTT
133754 TGCATACA-TGCATTC
1 TGCATACATTGCATTC
133769 TGCATACATTGCATT
1 TGCATACATTGCATT
133784 ATTTTCTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.37
Consensus pattern (16 bp):
TGCATACATTGCATTC
Found at i:137126 original size:21 final size:20
Alignment explanation
Indices: 137089--137131 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
137079 CAAAAGAATA
137089 AAGATATGAAAAGAAGGTGTG
1 AAGATATGAAAAGAAGGT-TG
*
137110 AAGATA-GAAAGGCAAGGTTG
1 AAGATATGAAAAG-AAGGTTG
137130 AA
1 AA
137132 AGGAGAAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.49, C:0.02, G:0.33, T:0.16
Consensus pattern (20 bp):
AAGATATGAAAAGAAGGTTG
Found at i:141928 original size:114 final size:113
Alignment explanation
Indices: 141737--141943 Score: 315
Period size: 114 Copynumber: 1.8 Consensus size: 113
141727 GTGCTACGTT
* * *
141737 CTCATAATAGAAATAAGAAGACCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGA
1 CTCATAATAGAAATAAGAAGACCAATAGCATCTTCTGGAAGTGTTCTTTAAGTCATCTGATATGA
* * * *
141802 TTTGGTATGAACCCCAGAATCAATCATTAGATTTGAAAGATGAATTTG
66 TTCGGTAGGAACCACAGAACCAATCATTAGATTTGAAAGATGAATTTG
* *
141850 CTCATAGTAGAAATAAGAAGACCCAATAGCATCTTCTGGAAGTTTTCTTTAAGTCATCTGATATG
1 CTCATAATAGAAATAAGAAGA-CCAATAGCATCTTCTGGAAGTGTTCTTTAAGTCATCTGATATG
*
141915 GTTCGGTAGGAACCACAGAACCAATCATT
65 ATTCGGTAGGAACCACAGAACCAATCATT
141944 GAAATTAAAA
Statistics
Matches: 83, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
113 20 0.24
114 63 0.76
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.31
Consensus pattern (113 bp):
CTCATAATAGAAATAAGAAGACCAATAGCATCTTCTGGAAGTGTTCTTTAAGTCATCTGATATGA
TTCGGTAGGAACCACAGAACCAATCATTAGATTTGAAAGATGAATTTG
Found at i:142809 original size:72 final size:71
Alignment explanation
Indices: 142718--142886 Score: 227
Period size: 72 Copynumber: 2.4 Consensus size: 71
142708 TGAAGAAGGA
* *
142718 AGAAGACGTTCATAATGAGAAGAACTTGTTCAACTTTTTGCTT-GAATTCATCA-TTCGATGGAT
1 AGAAGA-GTTCATAATGAGAAGAACTTGTTCAACATTTTG-TTCAAATTCATCACTT-GATGGAT
*
142781 CAGCATTTCC
63 CAACA-TTCC
*
142791 AGAAGAGTTCATAATGAGAAGAATTTGTTCAACATTTTGTTCAAATTCATCACTTGATGGATCAA
1 AGAAGAGTTCATAATGAGAAGAACTTGTTCAACATTTTGTTCAAATTCATCACTTGATGGATCAA
*
142856 CATTGC
66 CATTCC
*
142862 AGAAG-GTTCATAATGATAAGAACTT
1 AGAAGAGTTCATAATGAGAAGAACTT
142887 ATCTGAAAAG
Statistics
Matches: 87, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
70 18 0.21
71 10 0.11
72 51 0.59
73 8 0.09
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.33
Consensus pattern (71 bp):
AGAAGAGTTCATAATGAGAAGAACTTGTTCAACATTTTGTTCAAATTCATCACTTGATGGATCAA
CATTCC
Found at i:143199 original size:113 final size:113
Alignment explanation
Indices: 142976--143277 Score: 417
Period size: 113 Copynumber: 2.6 Consensus size: 113
142966 GATCAACATT
* * * *
142976 AGCATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAGGAAGAAATTCAT
1 AGCATTGCCAGGTAAAGTTCATAATGAGAAGAA--C-TCATCTGAAGAAAGAAGAAGAAGTTCAT
*
143041 AATAAGAAGAATTTGTTCAACCTTTTGCTCAAATCCATCACTTGATGAATC
63 AATGAGAAGAATTTGTTCAACCTTTTGCTCAAATCCATCACTTGATGAATC
* * * *
143092 AGCTTTTCCAGAG-AAAGTTCATAATGCGAAGAACTCATCTGAAGAATGAAGAAGAAGTTCATAA
1 AGCATTGCCAG-GTAAAGTTCATAATGAGAAGAACTCATCTGAAGAAAGAAGAAGAAGTTCATAA
* * * * * *
143156 TGAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATTATTTGATGGATC
65 TGAGAAGAATTTGTTCAACCTTTTGCTCAAATCCATCACTTGATGAATC
*
143205 AGCATTGCCAGGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAAGAAGAAGAAGTTCATAAT
1 AGCATTGCCAGGTAAAGTTCATAATGAGAAGAACTCATCTGAAGAAAGAAGAAGAAGTTCATAAT
143270 GAGAAGAA
66 GAGAAGAA
143278 CTCATCTGAA
Statistics
Matches: 165, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
112 1 0.01
113 135 0.82
114 1 0.01
116 27 0.16
117 1 0.01
ACGTcount: A:0.39, C:0.14, G:0.21, T:0.27
Consensus pattern (113 bp):
AGCATTGCCAGGTAAAGTTCATAATGAGAAGAACTCATCTGAAGAAAGAAGAAGAAGTTCATAAT
GAGAAGAATTTGTTCAACCTTTTGCTCAAATCCATCACTTGATGAATC
Found at i:143275 original size:40 final size:40
Alignment explanation
Indices: 143220--143316 Score: 176
Period size: 40 Copynumber: 2.4 Consensus size: 40
143210 TGCCAGGTAG
143220 AGTTCATAATGAGAAGAACTCATCTGAAGAAAGAAGAAGA
1 AGTTCATAATGAGAAGAACTCATCTGAAGAAAGAAGAAGA
*
143260 AGTTCATAATGAGAAGAACTCATCTGAAGAAAGAATAAGA
1 AGTTCATAATGAGAAGAACTCATCTGAAGAAAGAAGAAGA
*
143300 AGATCATAATGAGAAGA
1 AGTTCATAATGAGAAGA
143317 GCTTGTTCGA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.51, C:0.09, G:0.22, T:0.19
Consensus pattern (40 bp):
AGTTCATAATGAGAAGAACTCATCTGAAGAAAGAAGAAGA
Found at i:143677 original size:3 final size:3
Alignment explanation
Indices: 143669--143719 Score: 86
Period size: 3 Copynumber: 17.0 Consensus size: 3
143659 ATTTATTTAT
143669 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TA TATA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA
143714 TTA TTA
1 TTA TTA
143720 AAAAAATAAT
Statistics
Matches: 46, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
2 2 0.04
3 41 0.89
4 3 0.07
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:143731 original size:21 final size:21
Alignment explanation
Indices: 143686--143731 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
143676 TATTATTATT
* * * *
143686 ATTATTATTATTATATATATT
1 ATTATTATTATTAAAAAAATA
143707 ATTATTATTATTAAAAAAATA
1 ATTATTATTATTAAAAAAATA
143728 ATTA
1 ATTA
143732 CAAACCCAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (21 bp):
ATTATTATTATTAAAAAAATA
Found at i:145067 original size:21 final size:24
Alignment explanation
Indices: 145042--145087 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
145032 TAGTTCTAAT
145042 TTTAT-TTTT-ATTTT-TTGTTTA
1 TTTATGTTTTAATTTTATTGTTTA
145063 TTTATGTTTTAATTTTACTTGTTTA
1 TTTATGTTTTAATTTTA-TTGTTTA
145088 ATATTTATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
21 5 0.24
22 4 0.19
23 5 0.24
25 7 0.33
ACGTcount: A:0.17, C:0.02, G:0.07, T:0.74
Consensus pattern (24 bp):
TTTATGTTTTAATTTTATTGTTTA
Found at i:146654 original size:18 final size:18
Alignment explanation
Indices: 146612--146659 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
146602 TGTTTCTGAG
*
146612 GGAATTAGAATCTGTGAA
1 GGAATTGGAATCTGTGAA
146630 GGAATTGGAATCTGTGAA
1 GGAATTGGAATCTGTGAA
*
146648 GGAATTGAAATC
1 GGAATTGGAATC
146660 CAATTCCATA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.38, C:0.06, G:0.29, T:0.27
Consensus pattern (18 bp):
GGAATTGGAATCTGTGAA
Found at i:147568 original size:5 final size:5
Alignment explanation
Indices: 147560--147585 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
147550 ACAAAGTTTC
147560 ACCCG ACCCG ACCCG ACCCG ACCCG A
1 ACCCG ACCCG ACCCG ACCCG ACCCG A
147586 ATATATGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.58, G:0.19, T:0.00
Consensus pattern (5 bp):
ACCCG
Found at i:147574 original size:268 final size:269
Alignment explanation
Indices: 147030--147644 Score: 741
Period size: 268 Copynumber: 2.3 Consensus size: 269
147020 TCCATCTGAG
*
147030 ACCCGACCCGACCCGAATATATGAATTAG-AA----ACCCGACCCGAAATAAAAAAAAATTATTT
1 ACCCGACCCGACCCGAATATATGAATTAGAAACCCGACCCGACCCGAAATAATAAAAAATTATTT
*
147090 TTATTCAATAAAAACAGTTACTTAATTGGAAATATATATATATATATATATAGAGAGGGGTATTA
66 TTATTCAATAAAAACAGTGACTTAATTGGAAATATATATATATATATATATAGAGAGGGGTATTA
* * *
147155 TTGTAATTATTCCTAAATATATAAGGTAAAATTATATATTTTTTGGGTCGGGTCGGGTATTTTTC
131 TTGTAATTATTCATAAATATATAAGGTAAAATTATATATTATTT--GTCAGGTCGGGTATTTTTC
* *
147220 ACCCTAAACCCAAACCCGACCCGACCCGAACCGAATATCACACTTAAAAAAAACTGATCCGACCA
194 ACCCTAAACCCAAACCCGACCCGA-CC--ACCGAATATCACACTTAAAAAAAACCGACCCGACCA
*
147285 AAATAAAGTTT--C
256 AAACAAAGTTTCGC
*
147297 ACTCGACCCGACCCGAATATATGAATTAGAAACCCGACCCGACCCGACCCGAAATAATAAAAAAT
1 ACCCGACCCGACCCGAATATATGAATTAG-AA----ACCCGACCCGACCCGAAATAATAAAAAAT
*
147362 TATTTTTATTCAATAAAAA-AGTGACTTAATT-GAAA-A-A-A-A-A-AT-TATATATAGAGGGG
61 TATTTTTATTCAATAAAAACAGTGACTTAATTGGAAATATATATATATATATATATAGAGAGGGG
147418 TATTATTGTAATTATTCATAAATATATAAGGTAAAATTATATA-TATTT-TCAGGTCGGGTATTT
126 TATTATTGTAATTATTCATAAATATATAAGGTAAAATTATATATTATTTGTCAGGTCGGGTATTT
*
147481 TTCACCCTAAA-CCAGAACTCGACCCGA-C-CCGAATATCACACTTAAAAAAACCGAACCGACCC
191 TTCACCCTAAACCCA-AACCCGACCCGACCACCGAATATCACACTT-AAAAAA---AACCGACCC
147543 GACCAAAACAAAGTTTCACCCGACCC
251 GACCAAAACAAAGTTT----CG---C
* * * *
147569 GACCCGACCCGACCCGAATATATGAATTAGAAATCCTACCTGACCCGAAATAATAAAAAAATATT
1 -ACCCGACCCGACCCGAATATATGAATTAGAAACCCGACCCGACCCGAAATAATAAAAAATTATT
147634 TTTATTCAATA
65 TTTATTCAATA
147645 TATGAATAAG
Statistics
Matches: 307, Mismatches: 16, Indels: 49
0.83 0.04 0.13
Matches are distributed among these distances:
259 15 0.05
260 6 0.02
262 1 0.00
263 25 0.08
264 36 0.12
267 32 0.10
268 95 0.31
269 3 0.01
270 1 0.00
271 1 0.00
272 4 0.01
273 30 0.10
274 1 0.00
275 4 0.01
276 11 0.04
277 42 0.14
ACGTcount: A:0.41, C:0.20, G:0.13, T:0.27
Consensus pattern (269 bp):
ACCCGACCCGACCCGAATATATGAATTAGAAACCCGACCCGACCCGAAATAATAAAAAATTATTT
TTATTCAATAAAAACAGTGACTTAATTGGAAATATATATATATATATATATAGAGAGGGGTATTA
TTGTAATTATTCATAAATATATAAGGTAAAATTATATATTATTTGTCAGGTCGGGTATTTTTCAC
CCTAAACCCAAACCCGACCCGACCACCGAATATCACACTTAAAAAAAACCGACCCGACCAAAACA
AAGTTTCGC
Found at i:151100 original size:14 final size:14
Alignment explanation
Indices: 151081--151110 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
151071 TGCTTGGATT
151081 AACAAAGAGACCCA
1 AACAAAGAGACCCA
*
151095 AACAAATAGACCCA
1 AACAAAGAGACCCA
151109 AA
1 AA
151111 ACCTTTCAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.60, C:0.27, G:0.10, T:0.03
Consensus pattern (14 bp):
AACAAAGAGACCCA
Found at i:159533 original size:31 final size:31
Alignment explanation
Indices: 159495--159580 Score: 136
Period size: 31 Copynumber: 2.8 Consensus size: 31
159485 TAAATTAAGG
*
159495 TTTAGTACCTAAACTATCAATTTTGGTCTGT
1 TTTAGTACCTAAACTTTCAATTTTGGTCTGT
*
159526 TTTAGTACTTAAACTTTCAATTTTGGTCTGT
1 TTTAGTACCTAAACTTTCAATTTTGGTCTGT
* *
159557 TTTAGAACCCAAACTTTCAATTTT
1 TTTAGTACCTAAACTTTCAATTTT
159581 TTCAAACTAT
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 50 1.00
ACGTcount: A:0.27, C:0.16, G:0.10, T:0.47
Consensus pattern (31 bp):
TTTAGTACCTAAACTTTCAATTTTGGTCTGT
Found at i:161615 original size:20 final size:20
Alignment explanation
Indices: 161590--161627 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
161580 TGTTTAAAAG
161590 CTCATTTA-TGTGCATTTAGT
1 CTCATTTAGT-TGCATTTAGT
161610 CTCATTTAGTTGCATTTA
1 CTCATTTAGTTGCATTTA
161628 TCATACTTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 16 0.94
21 1 0.06
ACGTcount: A:0.21, C:0.16, G:0.13, T:0.50
Consensus pattern (20 bp):
CTCATTTAGTTGCATTTAGT
Found at i:166944 original size:20 final size:20
Alignment explanation
Indices: 166903--166955 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
166893 TTGATACTTT
*
166903 TCAAGAGTTTCGAAACTATC
1 TCAAGAGTTTCAAAACTATC
* *
166923 TCAAGAGTTTCAAAATTTTC
1 TCAAGAGTTTCAAAACTATC
166943 TCTAA-AGTTTCAA
1 TC-AAGAGTTTCAA
166956 TACTTTGGCT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 27 0.93
21 2 0.07
ACGTcount: A:0.36, C:0.17, G:0.11, T:0.36
Consensus pattern (20 bp):
TCAAGAGTTTCAAAACTATC
Done.