genome.fa.s2444.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002444.1 Hibiscus syriacus cultivar Beakdansim tig00005005_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50393

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5335--5407	32	2.2	32	83	7	85	46	6	4	42	1.49
5661--5829	91	1.9	91	89	1	268	27	10	9	52	1.67
12052--12779	248	3.0	243	88	6	1055	46	13	10	29	1.77
13191--13391	41	4.9	41	77	9	133	30	19	17	32	1.95
13227--13406	82	2.2	84	83	5	231	30	18	17	33	1.94
13914--13972	21	2.8	21	89	0	82	20	6	22	50	1.71
14728--14829	41	2.5	41	79	6	109	31	14	15	38	1.88
25702--25810	44	2.5	44	86	1	148	33	15	20	31	1.94
26471--26578	2	54.0	2	100	0	216	50	0	0	50	1.00
27015--27049	18	2.0	18	88	5	54	51	8	0	40	1.33
32270--32316	25	1.9	24	82	4	58	29	8	4	57	1.48
32686--32764	41	1.9	42	84	2	106	39	5	3	51	1.42
33086--33148	29	2.1	31	82	5	76	46	3	0	50	1.17
33119--33205	20	4.8	19	74	17	78	45	0	1	52	1.08
33130--33207	35	2.4	33	82	8	97	47	0	1	51	1.09
35908--35956	21	2.3	20	76	10	53	46	2	14	36	1.56
37831--37981	64	2.3	63	85	6	187	34	19	17	28	1.95
38440--38481	14	3.0	14	96	0	75	45	7	14	33	1.72
42014--42164	64	2.3	63	85	6	187	34	19	17	28	1.95
45208--45326	55	2.2	55	95	0	211	31	19	20	28	1.97
45284--45367	34	2.4	34	78	2	96	29	21	16	32	1.95
45725--45773	21	2.4	21	83	10	57	40	10	20	28	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45903--46012	22	5.1	22	70	16	70	22	19	24	33	1.97

Tables:   1

The End!