Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002445.1 Hibiscus syriacus cultivar Beakdansim tig00005006_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60232

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
586--616
14
2.1
15
94
5
55
54
0
0
45
0.99
4006--4038
14
2.2
16
89
10
52
51
0
0
48
1.00
5402--5437
18
2.0
18
89
10
56
38
0
0
61
0.96
5436--5527
3
31.3
3
91
4
152
63
0
2
34
1.07
5850--6627
113
6.9
113
96
1
1366
30
19
13
37
1.90
7355--8306
83
11.5
83
95
0
1644
37
21
12
28
1.90
7355--8306
248
3.8
249
95
1
1698
37
21
12
28
1.90
7355--8306
331
2.9
331
94
0
1667
37
21
12
28
1.90
9457--9518
12
5.3
12
75
7
65
0
16
0
83
0.64
9458--9522
22
3.0
21
82
14
87
0
18
0
81
0.69
9457--9518
24
2.6
24
82
12
74
0
16
0
83
0.64
21712--21753
15
2.8
15
82
7
50
0
23
2
73
0.94
22311--22383
3
24.3
3
94
0
128
63
0
2
34
1.09
22451--22505
24
2.5
22
81
18
62
49
0
3
47
1.19
22791--22823
15
2.2
15
94
0
57
21
6
60
12
1.53
28881--28970
21
4.2
21
86
6
110
22
38
25
13
1.90
31556--31598
22
2.0
22
85
0
59
46
13
6
32
1.71
33052--33778
201
3.6
199
81
6
763
39
13
15
30
1.87
33799--33918
64
1.9
64
94
0
213
31
12
12
43
1.80
34495--34543
14
3.6
14
81
10
57
53
0
0
46
1.00
34500--34552
26
2.0
26
85
0
70
56
0
0
43
0.99
34551--34593
16
2.6
16
82
13
52
55
2
6
34
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36492--36583
32
3.1
30
82
10
100
41
0
0
58
0.98
36537--36583
24
1.9
24
87
12
69
38
0
0
61
0.96
38227--38317
21
4.3
21
80
5
94
26
32
23
17
1.96
38778--38867
46
2.0
46
80
8
103
43
10
4
42
1.58
39152--39176
13
1.9
13
100
0
50
48
16
4
32
1.64
39951--40475
138
3.9
137
85
5
705
32
22
19
25
1.98
41926--41957
3
10.7
3
100
0
64
68
0
31
0
0.90
48337--48403
32
2.2
31
86
5
100
55
0
10
34
1.34
48918--49026
41
2.7
42
94
4
188
22
18
22
36
1.95
48958--49075
61
1.9
61
98
0
227
22
20
22
33
1.97
49883--49933
21
2.4
21
96
0
93
41
19
19
19
1.91
53424--53524
45
2.2
45
98
0
193
25
14
25
33
1.95
53553--53818
44
6.2
44
77
7
246
29
17
22
30
1.96
59937--60000
24
2.6
24
87
9
85
31
20
4
43
1.72

Tables:   1

The End!