Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002446.1 Hibiscus syriacus cultivar Beakdansim tig00005016_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93974

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14529--14568
21
1.9
21
89
0
62
10
25
40
25
1.86
14551--14611
20
2.9
21
87
7
79
18
26
34
21
1.96
21190--21216
14
1.9
14
100
0
54
22
22
22
33
1.97
21585--21635
24
2.3
23
78
15
56
25
3
17
52
1.61
22515--22627
23
5.0
23
75
6
95
17
25
23
33
1.96
22561--22619
22
2.6
22
83
5
64
18
27
23
30
1.98
23933--24002
35
2.0
35
97
0
131
35
17
12
34
1.88
23992--24101
54
2.0
54
98
0
211
31
12
15
40
1.85
28303--28340
17
2.2
17
90
0
58
0
34
0
65
0.93
30473--30579
31
3.8
26
75
20
90
26
0
3
70
1.04
30473--30575
21
4.8
21
72
14
86
25
0
3
70
1.04
30995--31045
23
2.3
22
80
9
59
52
5
5
35
1.50
38139--38172
17
2.0
17
88
0
50
26
0
2
70
1.01
38066--38278
69
3.2
68
92
5
353
33
5
4
55
1.44
38243--38364
54
2.4
51
82
10
133
40
8
3
48
1.49
38334--38437
54
1.9
55
94
2
183
43
8
4
43
1.56
47698--47741
14
3.4
13
90
9
72
72
0
6
20
1.07
47762--47796
13
2.7
13
86
0
52
74
2
2
20
1.08
47756--47828
31
2.4
31
84
13
89
72
4
4
19
1.17
49127--49188
31
2.0
32
83
3
81
48
6
1
43
1.38
49116--49563
75
6.2
68
74
14
211
45
7
3
43
1.47
49116--49523
37
11.4
37
75
13
304
45
6
3
44
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49221--49523
75
4.1
73
81
9
319
45
6
2
44
1.45
49413--49472
11
5.3
11
75
15
50
41
8
3
46
1.50
49549--49593
15
3.1
15
87
6
58
55
0
0
44
0.99
50113--50703
164
3.6
164
88
0
876
24
22
24
28
1.99
56013--56056
14
3.4
13
90
9
72
72
0
9
18
1.10
56077--56111
13
2.7
13
86
0
52
74
2
2
20
1.08
57460--57521
31
2.0
32
83
3
81
48
6
1
43
1.38
57554--57938
38
10.2
37
79
8
359
45
7
3
44
1.47
57553--57899
75
4.6
73
83
7
383
45
6
3
44
1.45
57563--57899
113
2.9
115
84
5
416
45
6
2
44
1.44
57785--57809
11
2.3
11
100
0
50
44
8
8
40
1.63
57553--57938
75
5.1
73
78
12
298
45
7
3
44
1.47
57513--57938
113
3.8
108
78
13
382
45
7
3
43
1.48
57925--57969
15
3.1
15
87
6
58
55
0
0
44
0.99
59457--59500
21
2.0
22
86
4
63
68
0
4
27
1.09
64270--64299
14
2.1
14
100
0
60
60
6
0
33
1.23
64282--64339
25
2.3
25
76
5
64
53
10
0
36
1.35
64822--64849
2
14.0
2
100
0
56
50
0
0
50
1.00
72188--72380
32
6.1
32
93
5
322
34
21
18
25
1.96
80058--80112
18
3.1
18
78
7
67
12
20
29
38
1.89
81124--81226
30
3.4
30
89
2
136
31
25
21
22
1.98
81127--81251
30
4.1
30
86
2
135
32
25
21
20
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
81199--81276
31
2.5
31
85
4
95
34
23
20
21
1.97
81925--81975
2
25.5
2
100
0
102
49
0
0
50
1.00
82531--82575
21
2.1
21
87
0
63
15
24
26
33
1.95
87840--87879
21
1.9
21
89
0
62
10
25
40
25
1.86
87860--87922
20
2.9
21
79
9
65
15
25
34
23
1.95

Tables:   1

The End!