genome.fa.s2448.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002448.1 Hibiscus syriacus cultivar Beakdansim tig00005018_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106503

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2956--2996	3	13.7	3	90	10	66	70	0	0	29	0.87
3046--3103	20	2.8	21	79	7	57	74	6	8	10	1.23
4294--4343	3	18.0	3	80	15	63	64	0	0	36	0.94
9737--9770	16	2.1	17	88	5	52	58	5	5	29	1.45
15103--15160	20	2.7	20	81	10	62	27	20	18	32	1.97
18543--18635	37	2.4	41	81	10	108	47	19	0	33	1.50
25420--25474	23	2.5	20	76	18	65	30	16	16	36	1.91
25863--25910	24	1.9	26	83	8	64	39	2	4	54	1.32
25889--25922	17	2.1	17	88	5	52	29	0	8	61	1.26
27689--27722	12	2.7	13	86	9	52	44	8	5	41	1.60
30791--30864	34	2.2	33	85	7	103	18	37	22	20	1.94
34280--34365	34	2.5	35	87	9	131	20	31	25	22	1.98
34307--34363	15	3.5	15	72	25	53	21	35	24	19	1.96
43540--43586	24	1.9	24	83	12	60	34	0	25	40	1.56
43694--43733	20	2.0	20	95	0	71	12	15	12	60	1.60
44188--44225	14	2.7	14	87	0	58	42	10	2	44	1.52
44241--44408	79	2.2	73	78	14	183	40	4	9	45	1.56
44337--44372	13	2.8	13	87	4	56	38	8	8	44	1.65
44426--44480	19	2.8	18	81	10	56	41	0	12	45	1.42
44441--44470	16	1.9	16	93	6	53	40	0	13	46	1.43
45911--45978	32	2.1	32	89	5	102	26	23	16	33	1.95
47729--47881	24	6.5	24	75	5	123	60	16	11	11	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48067--48116	24	2.1	24	92	0	82	58	22	12	8	1.59
48057--48128	14	5.4	14	79	17	82	56	20	12	9	1.64
51513--51560	21	2.3	21	100	0	96	20	8	41	29	1.81
54444--54592	77	1.9	79	83	8	198	45	6	7	40	1.58
56759--56803	19	2.4	19	88	0	72	35	8	31	24	1.86
60169--60247	20	4.0	20	79	8	72	18	21	21	37	1.94
63579--63624	20	2.3	20	85	7	58	41	19	21	17	1.90
66063--66122	29	2.1	28	82	11	70	51	21	1	25	1.57
67820--67883	2	32.0	2	100	0	128	50	0	0	50	1.00
68598--69041	6	74.5	6	95	1	698	52	30	0	16	1.44
69039--69228	6	31.8	6	74	13	133	43	21	15	20	1.88
68823--69229	18	22.7	18	81	4	167	49	24	7	18	1.72
69240--69297	6	9.7	6	98	0	89	56	25	0	17	1.40
71561--72186	6	103.0	6	80	4	376	45	15	20	18	1.85
71565--72186	68	9.3	68	75	7	416	45	15	20	18	1.85
72199--72319	6	20.2	6	97	0	224	51	16	16	15	1.77
72626--72664	19	2.1	19	95	0	69	20	38	15	25	1.92
72612--72772	65	2.5	65	86	3	218	30	26	16	27	1.96
72612--72792	64	2.8	64	83	2	220	29	26	17	27	1.97
79931--80014	40	2.1	40	100	0	168	34	15	27	22	1.94
80274--80303	8	3.8	8	95	0	51	13	0	33	53	1.40
80962--81000	19	2.1	19	95	0	69	20	38	15	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80948--81108	65	2.5	65	86	3	218	30	26	16	27	1.96
80948--81128	64	2.8	64	83	2	220	29	26	17	27	1.97
81831--81942	6	18.7	6	98	0	215	50	16	16	16	1.78
81942--82906	6	159.8	6	78	4	409	43	17	19	19	1.88
82361--82521	56	2.9	56	83	1	155	45	13	20	19	1.84
81939--82906	12	80.7	12	81	7	489	43	17	19	19	1.88
82728--83431	12	58.4	12	89	8	446	52	16	13	17	1.74
82911--83508	24	25.2	24	90	4	588	53	17	12	17	1.73
82899--83431	36	14.8	36	92	0	751	54	16	11	17	1.71
83427--84130	12	59.2	12	81	6	250	45	18	17	19	1.86
82893--83550	36	18.4	36	87	5	572	53	17	12	17	1.73
83433--84131	6	115.5	6	78	2	214	44	18	17	19	1.86
82661--83559	24	37.5	24	86	5	416	51	16	14	17	1.76
83853--84043	50	3.7	50	83	4	229	50	16	14	18	1.78
84123--84457	12	28.4	12	95	3	583	33	39	17	9	1.82
83585--84487	6	149.8	6	82	1	514	40	26	16	16	1.90
84456--84796	6	56.2	6	83	4	128	50	15	14	19	1.78
84453--84686	12	19.2	12	81	8	150	51	16	13	19	1.76
84517--84707	50	3.7	50	85	4	238	50	16	14	18	1.79
84732--84818	6	14.5	6	96	0	156	48	17	18	16	1.82
84798--84844	12	3.9	12	91	0	67	38	21	23	17	1.93
84730--84844	18	6.4	18	92	0	68	45	18	19	17	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106179--106232	2	27.5	2	92	3	92	48	1	0	50	1.11

Tables:   1

The End!