genome.fa.s2449.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002449.1 Hibiscus syriacus cultivar Beakdansim tig00005019_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52088

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1865--2104	100	2.3	100	81	4	273	21	17	24	35	1.95
3312--3347	17	2.2	17	90	9	58	0	8	2	88	0.59
3246--3381	73	1.9	71	84	6	184	11	19	11	57	1.64
13666--13735	6	11.3	6	80	6	68	74	4	2	18	1.11
15454--15504	17	2.9	17	75	25	52	37	0	1	60	1.08
16416--16486	37	1.9	36	82	5	88	43	1	4	50	1.30
16913--16952	21	1.9	21	94	0	71	12	10	7	70	1.35
19477--19545	18	3.8	18	98	0	129	31	26	18	23	1.97
20264--20420	21	7.8	20	72	7	84	38	24	17	19	1.92
20387--20580	20	9.6	20	80	5	203	36	25	19	19	1.95
20387--20580	60	3.2	60	82	0	235	36	25	19	19	1.95
21079--21156	41	1.9	41	94	0	138	44	15	25	14	1.84
21080--21155	21	3.7	21	80	3	100	46	15	25	13	1.82
21140--21196	14	3.7	14	70	20	51	43	22	22	10	1.84
21132--21212	33	2.5	33	91	0	135	46	22	20	9	1.80
21208--21305	19	5.7	19	68	22	81	9	24	22	43	1.82
21230--21319	14	5.7	14	69	23	63	7	25	23	43	1.80
21213--21327	33	3.5	33	95	0	212	8	24	20	46	1.79
22984--23041	14	3.8	14	73	20	53	6	18	27	46	1.75
22999--23097	19	5.4	19	78	12	109	9	17	28	45	1.78
22985--23060	33	2.3	33	93	0	125	7	19	26	46	1.77
25020--25055	14	2.6	14	95	0	63	33	0	22	44	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25162--25259	19	5.4	19	84	13	143	45	17	22	14	1.84
25162--25278	53	2.2	53	98	1	227	44	17	23	13	1.85
25268--25468	19	11.7	19	72	21	176	14	20	18	45	1.85
25362--25415	14	3.5	14	73	22	54	11	24	20	44	1.83
25274--25482	50	4.1	51	77	16	222	13	21	18	46	1.83
25344--25501	67	2.4	67	87	5	216	13	20	20	45	1.84
25344--25482	33	4.2	33	87	7	212	12	21	19	46	1.83
28708--28957	20	12.5	20	87	1	259	19	18	24	37	1.94
28944--29026	21	4.0	21	73	6	78	25	16	24	33	1.96
28924--29022	42	2.4	43	77	11	100	21	18	23	37	1.94
32236--32530	137	2.1	137	81	4	360	32	13	11	42	1.81
33803--34562	203	3.8	203	87	2	1077	34	19	19	26	1.96
33803--34570	405	1.9	403	88	1	1126	33	20	19	26	1.96
36405--36458	26	2.0	26	85	3	72	24	9	5	61	1.48
36817--36859	14	3.1	14	86	0	59	23	20	13	41	1.88
37183--37520	137	2.4	139	85	2	441	29	15	13	41	1.85
40858--40887	15	2.0	15	93	0	51	50	6	3	40	1.45
45168--45210	23	1.9	22	85	4	59	18	20	4	55	1.60
45160--45221	22	2.7	23	82	2	81	17	20	9	51	1.73
45757--45781	4	6.2	4	100	0	50	76	0	0	24	0.80
46637--46693	23	2.5	23	76	0	69	22	10	21	45	1.82
46701--46748	11	4.4	11	81	0	60	12	4	25	58	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46684--46748	33	2.0	33	84	6	87	12	7	23	56	1.61
48236--48449	47	4.6	47	81	2	214	34	22	23	19	1.96

Tables:   1

The End!