genome.fa.s245.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000245.1 Hibiscus syriacus cultivar Beakdansim tig00000431_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78780

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
555--750	95	2.1	93	87	5	281	31	17	15	35	1.91
3328--3367	15	2.6	15	88	4	53	75	0	2	22	0.93
4304--4329	12	2.2	12	100	0	52	30	30	7	30	1.85
4316--4362	23	2.0	23	100	0	94	17	25	25	31	1.97
6106--6146	19	2.2	19	100	0	82	41	21	4	31	1.74
6563--6681	60	2.0	59	88	1	175	25	24	24	26	2.00
8977--9011	17	2.1	17	89	10	54	71	14	0	14	1.15
8984--9037	26	2.2	24	87	9	74	72	7	0	20	1.08
9571--9632	21	3.0	21	82	0	79	29	24	20	25	1.99
10228--10265	20	1.9	20	88	0	58	55	0	5	39	1.23
11280--11323	11	4.1	11	82	2	54	75	0	6	18	1.02
11537--11600	3	21.7	3	87	12	89	71	0	0	28	0.86
11865--11929	17	3.7	18	76	14	55	73	3	0	23	0.97
11914--11966	3	17.0	3	85	14	72	62	0	3	33	1.13
12328--12436	37	2.9	37	95	0	200	32	13	14	39	1.86
13549--13938	110	3.5	110	92	0	663	25	16	22	34	1.95
15639--15672	12	2.8	12	91	8	52	0	14	5	79	0.91
15614--15677	13	4.8	13	81	9	67	3	12	6	78	1.06
18641--18687	22	2.1	23	84	4	60	72	2	10	14	1.21
18767--18813	25	1.9	24	83	12	60	72	0	14	12	1.13
19111--19160	18	2.9	18	77	16	52	74	4	0	22	0.99
19112--19177	17	3.7	18	76	13	57	72	3	0	24	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19193--19229	17	2.0	20	85	15	53	75	0	5	18	0.99
22056--22082	11	2.5	11	100	0	54	85	0	0	14	0.61
23871--23943	35	2.1	35	89	0	110	27	31	13	27	1.94
35578--35648	27	2.7	27	88	2	99	38	18	15	28	1.91
35574--35648	26	2.8	26	87	2	105	37	17	17	28	1.92
36576--36698	39	3.2	38	79	8	131	20	28	20	30	1.97
41496--41577	19	4.2	19	83	12	85	18	39	30	12	1.87
41496--41577	20	4.1	20	84	10	96	18	39	30	12	1.87
44955--45007	21	2.6	21	87	3	72	22	41	22	13	1.88
45355--45436	34	2.4	34	93	0	137	34	14	26	24	1.94
46622--46690	20	3.5	20	66	7	59	23	2	15	57	1.52
46596--46929	40	8.6	40	72	13	270	24	4	16	54	1.60
46514--46889	188	2.0	191	90	2	605	25	5	16	52	1.64
46947--46995	19	2.5	20	83	3	64	34	4	0	61	1.15
51765--51823	29	2.0	29	96	0	109	32	8	27	32	1.87
54699--54781	3	28.0	3	82	11	100	34	1	0	63	1.02
56999--57068	25	2.9	23	76	14	70	31	5	0	62	1.18
58579--58620	7	6.0	7	81	8	50	14	16	14	54	1.71
58579--58620	15	3.0	14	83	10	50	14	16	14	54	1.71
58679--58724	12	3.7	12	77	11	56	21	13	10	54	1.69
58670--58724	26	2.1	26	82	0	65	23	14	9	52	1.70
58685--58728	14	3.3	14	75	12	56	22	11	9	56	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60801--60832	2	16.0	2	100	0	64	50	0	0	50	1.00
61119--61171	25	2.0	27	89	7	83	71	11	13	3	1.26
61155--61230	18	4.0	18	79	15	82	82	0	15	1	0.73
61835--61896	32	1.9	32	96	0	115	43	19	17	19	1.88
65977--66053	22	3.5	22	96	0	145	33	11	14	40	1.82
66729--66960	76	3.1	76	95	0	410	23	19	21	35	1.96
66958--67833	113	7.8	113	84	4	1089	38	13	18	29	1.89
66958--67834	225	3.9	226	86	3	1130	38	13	18	29	1.89
66977--67834	338	2.5	336	93	2	1463	38	13	18	29	1.89
67746--67978	120	1.9	120	83	6	303	40	14	18	26	1.89
68176--68254	3	27.0	3	81	10	92	34	1	0	64	1.02
69612--69641	2	15.0	2	100	0	60	50	50	0	0	1.00
69641--69684	2	22.0	2	100	0	88	50	0	0	50	1.00
75987--76064	3	26.7	3	86	10	108	34	1	1	62	1.11
78163--78187	7	3.6	7	100	0	50	68	0	0	32	0.90

Tables:   1

The End!