genome.fa.s2451.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002451.1 Hibiscus syriacus cultivar Beakdansim tig00005023_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17280

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
728--885	21	7.8	20	72	7	86	38	24	17	18	1.93
853--1046	20	9.6	20	80	8	87	36	26	18	19	1.94
853--1046	40	4.8	39	83	3	208	36	26	18	19	1.94
853--1045	60	3.2	60	83	3	253	35	26	18	19	1.95
1425--1495	33	2.2	33	94	0	124	11	23	16	47	1.79
1575--1684	21	5.8	20	74	17	108	45	17	24	12	1.83
1568--1684	41	3.1	38	81	14	145	46	16	25	11	1.81
1635--1691	14	3.7	14	75	20	60	43	21	24	10	1.83
1627--1707	33	2.5	33	93	0	135	46	20	22	9	1.80
1703--1830	19	7.1	19	72	19	96	11	23	18	46	1.82
1725--1781	14	3.7	14	77	20	60	8	22	22	45	1.80
1708--1830	33	3.5	33	86	10	156	11	22	18	47	1.81
1765--1820	21	2.8	20	81	5	67	14	25	17	42	1.87
1765--1828	20	3.2	20	77	4	83	14	23	15	46	1.82
2270--2296	11	2.5	11	100	0	54	22	0	14	62	1.31
3309--3349	20	2.0	22	85	9	59	53	2	0	43	1.13
3731--3771	22	1.9	21	90	5	64	41	34	0	24	1.55
3753--3814	14	4.6	14	71	18	51	45	35	1	17	1.59
15115--15272	21	7.8	20	72	7	86	38	24	17	18	1.93
15240--15432	20	9.6	20	82	5	228	35	26	18	19	1.95
15809--15879	33	2.2	33	94	0	124	11	23	16	47	1.79
15958--16063	21	5.6	20	70	16	91	45	16	24	13	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15951--16067	41	3.1	38	79	14	136	46	15	25	12	1.81
16018--16074	14	3.7	14	72	20	51	43	19	24	12	1.85
16010--16090	33	2.5	33	91	0	126	46	19	22	11	1.81
16086--16213	19	7.1	19	72	19	96	11	23	18	46	1.82
16108--16164	14	3.7	14	77	20	60	8	22	22	45	1.80
16091--16213	33	3.5	33	86	10	156	11	22	18	47	1.81
16148--16203	21	2.8	20	81	5	67	14	25	17	42	1.87
16148--16211	20	3.2	20	77	4	83	14	23	15	46	1.82

Tables:   1

The End!