Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002453.1 Hibiscus syriacus cultivar Beakdansim tig00005026_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80764

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
325--614
21
14.0
21
70
17
180
35
22
20
21
1.96
477--584
19
5.4
19
76
10
108
37
22
20
19
1.94
452--605
40
3.8
40
93
3
256
37
24
20
18
1.94
452--623
61
2.8
61
76
10
167
36
23
20
19
1.95
979--1032
23
2.2
25
83
6
67
61
1
0
37
1.07
6607--6685
30
2.6
31
80
11
92
58
6
13
21
1.58
11954--12024
30
2.4
29
86
6
97
38
11
28
22
1.88
12145--12193
2
25.5
2
79
8
57
46
0
0
53
1.00
12485--12614
58
2.2
60
82
8
151
43
3
22
30
1.71
16041--16078
12
3.2
12
92
0
67
7
15
50
26
1.72
16041--16095
24
2.3
24
90
0
83
12
14
47
25
1.80
16195--16237
13
3.4
13
93
3
70
13
16
51
18
1.77
17367--17405
5
7.8
5
100
0
78
0
0
17
82
0.68
30427--30909
136
3.5
135
83
4
533
25
21
17
36
1.95
30851--31159
105
2.9
105
91
2
474
20
22
19
38
1.93
32091--32192
8
13.0
8
77
17
65
8
12
0
77
1.04
32124--32172
11
4.2
11
80
19
55
4
8
2
85
0.79
32078--32202
36
3.1
39
81
17
134
8
13
0
77
1.02
32124--32207
31
2.6
31
74
10
80
8
13
1
77
1.05
32079--32206
39
3.3
38
74
14
127
7
14
0
77
1.03
35729--35755
14
1.9
14
100
0
54
66
3
22
7
1.33
54964--55037
20
3.9
19
75
22
68
28
17
28
25
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54986--55036
16
2.9
17
78
21
52
27
19
27
25
1.99
54966--55136
36
5.0
36
70
17
139
27
16
27
28
1.97
55087--55136
20
2.8
18
77
22
52
26
20
28
26
1.99
57823--57870
16
2.8
17
78
12
53
33
12
25
29
1.92
57841--57872
16
2.0
16
93
0
55
31
15
21
31
1.95
57823--57893
36
2.0
36
88
2
108
29
15
26
28
1.96
57942--57999
16
3.4
16
75
25
64
24
18
29
27
1.98
57924--58135
36
5.9
36
92
0
316
27
16
28
27
1.97
62536--62604
29
2.3
30
76
14
70
33
14
4
47
1.64
65140--65190
25
2.1
25
88
3
77
58
0
5
35
1.22
65164--65290
59
2.2
59
84
9
163
51
2
7
38
1.42
65139--65303
30
5.8
30
73
10
134
53
2
7
36
1.42
66269--66307
20
1.9
21
84
5
53
25
2
10
61
1.41
72345--72397
20
2.7
20
93
0
88
26
30
9
33
1.88
73917--73961
23
2.0
23
86
0
63
48
15
11
24
1.77
74806--74864
29
2.0
29
83
12
75
44
8
22
25
1.81
74857--74917
31
2.0
31
87
6
88
44
9
14
31
1.78
76071--76115
20
2.3
20
92
3
74
35
0
22
42
1.54
79654--79695
15
2.8
16
75
14
52
54
0
0
45
0.99

Tables:   1

The End!