Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002454.1 Hibiscus syriacus cultivar Beakdansim tig00005027_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55814

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
351--418
15
4.3
15
78
14
73
2
7
4
85
0.82
353--415
16
3.9
17
78
17
64
3
7
4
84
0.87
351--420
13
5.1
13
81
10
77
2
7
4
85
0.80
353--415
31
2.0
31
87
6
90
3
7
4
84
0.87
363--421
27
2.2
26
87
3
82
1
6
6
84
0.83
371--429
26
2.2
27
84
3
75
0
11
6
81
0.87
351--420
1
70.0
1
71
0
50
2
7
4
85
0.80
4839--4946
18
6.2
17
71
17
62
62
0
3
33
1.19
5575--5672
37
2.6
37
88
0
133
35
10
13
40
1.78
7650--7722
33
2.4
31
82
15
89
49
2
1
46
1.24
7716--7796
42
1.9
42
89
0
126
49
0
3
46
1.19
7924--7967
23
1.9
23
85
0
61
47
0
0
52
1.00
7973--8023
19
2.7
18
75
19
59
56
7
0
35
1.28
8031--8103
34
2.1
33
85
7
92
46
1
1
50
1.18
13459--13549
34
2.7
34
91
5
148
28
9
18
42
1.82
13535--13823
36
8.1
36
81
9
335
39
14
19
25
1.90
13606--13795
102
1.9
102
86
2
274
40
14
19
25
1.89
13729--13793
21
3.4
21
66
24
61
43
12
20
24
1.86
13570--13822
138
1.8
138
90
1
409
39
14
19
26
1.90
15181--15380
95
2.1
96
87
1
294
33
17
17
32
1.93
19264--19333
30
2.3
30
77
2
77
68
0
11
20
1.20
19767--19791
5
5.0
5
100
0
50
80
0
0
20
0.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26951--26987
19
1.9
19
94
0
65
43
8
21
27
1.80
27183--27219
19
1.9
19
100
0
74
43
10
21
24
1.84
26931--27394
232
2.0
232
98
0
901
40
15
15
29
1.87
35442--35467
13
2.0
13
100
0
52
76
7
0
15
0.99
36098--36156
20
2.9
20
97
2
109
23
28
11
35
1.91
37274--37303
10
3.0
10
100
0
60
80
0
10
10
0.92
38597--38659
28
2.3
27
86
5
81
74
0
4
20
0.99
38646--38678
3
11.3
3
87
6
50
72
0
0
27
0.85
38599--38676
23
3.6
22
76
13
81
74
0
3
21
0.98
38692--39017
36
9.4
32
75
15
169
45
5
2
45
1.41
38671--38768
36
2.7
36
81
10
119
48
7
0
43
1.30
38735--38796
28
2.2
28
82
5
72
43
4
3
48
1.40
38699--38902
64
3.1
64
79
14
195
46
5
2
46
1.39
38763--39030
37
7.4
36
81
8
282
45
6
4
44
1.48
39680--40486
84
9.8
83
79
6
793
25
19
24
30
1.98
39678--40486
249
3.3
248
88
2
1146
25
19
24
30
1.98
39656--40470
165
5.0
162
79
6
730
25
19
24
30
1.98
41651--41830
93
1.9
95
85
4
249
30
18
18
32
1.95
46816--46894
5
14.8
5
77
15
70
75
0
2
21
0.91
46816--46879
28
2.2
28
91
8
103
75
0
3
21
0.95
46814--46897
11
7.8
10
70
11
51
76
0
2
21
0.90
46890--47240
36
9.8
36
71
15
160
46
7
2
44
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46953--47015
29
2.2
29
88
2
92
46
4
1
47
1.33
46918--47051
62
2.1
63
85
9
184
45
5
2
47
1.37
46980--47241
38
7.2
34
76
15
152
45
6
3
44
1.47
46982--47090
33
3.3
32
82
11
114
45
5
3
44
1.44
47010--47240
74
3.1
73
84
10
297
45
6
3
44
1.46
46982--47277
77
4.0
73
78
14
261
44
7
4
44
1.50
46989--47305
75
4.3
74
78
15
263
44
7
3
43
1.51
47538--47571
18
1.9
18
88
5
52
52
0
8
38
1.33
54179--54220
20
2.1
20
86
0
57
23
33
23
19
1.97
55427--55501
27
2.8
27
87
2
107
40
2
1
56
1.22

Tables:   1

The End!