genome.fa.s2456.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002456.1 Hibiscus syriacus cultivar Beakdansim tig00005030_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  134757

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3464--3699	123	1.9	122	88	0	355	25	19	17	37	1.94
3640--4083	117	3.8	116	88	3	662	23	25	12	39	1.89
3640--4091	39	11.7	39	88	3	601	23	25	11	39	1.89
4098--4355	72	3.6	73	91	1	403	39	13	15	32	1.85
4114--4306	37	5.3	37	66	14	114	36	15	16	32	1.89
5052--5106	22	2.5	22	96	0	101	38	16	12	32	1.86
5475--5622	54	2.7	54	92	0	251	28	22	14	34	1.93
5904--6076	75	2.3	75	85	2	231	28	24	15	31	1.95
9859--9941	35	2.3	38	79	10	102	59	8	15	16	1.60
9894--9939	21	2.1	22	88	4	67	54	10	19	15	1.70
10481--10615	67	2.0	67	97	0	252	26	15	9	48	1.76
11490--11626	64	2.2	63	81	6	152	24	21	18	34	1.96
14966--15018	23	2.3	23	90	0	88	26	26	26	20	1.99
16624--16760	64	2.2	63	80	6	143	25	23	18	32	1.97
20081--20149	23	3.0	23	82	0	84	30	24	24	20	1.99
24915--24951	15	2.5	15	90	0	56	51	10	35	2	1.51
25432--25516	6	11.7	7	72	19	52	29	1	3	65	1.16
25482--25524	21	2.0	23	90	9	72	34	0	0	65	0.93
25433--25522	37	2.5	38	73	20	93	30	1	3	65	1.16
25654--25907	139	1.8	139	87	0	382	40	7	5	46	1.55
25900--25927	2	14.0	2	100	0	56	50	0	0	50	1.00
26480--26531	21	2.5	20	73	14	52	25	3	3	67	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33547--33593	18	2.6	18	80	12	60	36	23	19	21	1.95
35566--35632	22	3.0	22	86	4	91	37	14	13	34	1.86
35573--35649	22	3.5	22	87	3	102	36	12	14	36	1.84
36364--36477	45	2.5	45	81	2	120	23	21	22	31	1.98
36270--36783	121	4.2	121	91	0	812	25	22	19	32	1.97
36486--36597	45	2.4	45	79	2	116	27	25	16	29	1.97
36531--36672	76	1.9	74	81	5	169	26	23	18	32	1.97
38307--38351	22	2.1	22	88	12	67	28	0	4	66	1.11
38477--38732	139	1.8	141	89	3	410	38	5	7	48	1.53
38711--38744	2	17.5	2	93	6	61	50	0	0	50	1.00
42207--42308	45	2.3	44	79	5	107	34	18	21	25	1.96
42300--42373	20	3.5	20	76	18	71	29	17	25	27	1.97
43484--43521	19	2.0	19	89	0	58	44	2	13	39	1.57
44542--44658	57	2.1	57	96	0	216	29	17	26	25	1.98
78680--78729	25	2.0	25	92	0	82	44	10	22	24	1.83
79209--79262	18	3.0	18	94	0	90	25	20	29	24	1.99
79340--79367	14	2.0	14	100	0	56	21	21	35	21	1.96
82737--82861	23	5.5	23	85	3	157	27	26	18	28	1.98
85185--85340	64	2.4	65	85	7	194	28	24	18	28	1.98
91098--91240	60	2.4	59	83	5	173	31	12	4	51	1.59
94777--94896	35	3.3	36	85	9	156	34	2	18	45	1.63
99386--99446	21	3.2	21	65	29	64	31	4	21	42	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99378--99496	35	3.3	37	88	8	174	31	5	19	43	1.72
103526--103563	17	2.2	18	95	4	69	36	10	0	52	1.36
103530--103571	17	2.4	17	88	4	57	35	11	0	52	1.38
105304--105345	10	4.2	10	84	0	57	61	9	11	16	1.55
112977--113044	30	2.3	30	97	0	127	33	25	7	33	1.83
121364--121404	21	2.0	21	85	9	57	51	0	2	46	1.14
124743--124780	15	2.4	16	86	4	60	26	0	36	36	1.57

Tables:   1

The End!