genome.fa.s2457.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002457.1 Hibiscus syriacus cultivar Beakdansim tig00005031_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61565

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7318--7405	40	2.2	40	81	8	97	27	22	12	37	1.90
7334--7403	20	3.5	19	74	14	61	25	21	12	40	1.89
7425--7464	20	2.0	20	90	0	62	22	12	17	47	1.81
7937--7970	12	2.8	12	90	0	50	55	29	0	14	1.40
8089--8135	24	2.0	24	91	0	76	27	19	19	34	1.96
8094--8147	24	2.2	24	93	0	90	22	16	20	40	1.91
10690--10722	11	3.0	11	100	0	66	0	36	0	63	0.95
11703--11777	23	3.3	22	70	15	71	40	8	20	32	1.81
11678--11789	46	2.4	47	89	7	167	42	7	17	32	1.77
11940--12035	38	2.5	38	89	0	147	27	22	27	22	1.99
13936--14045	53	2.1	53	85	0	148	40	24	10	24	1.87
13916--14065	73	2.1	73	88	0	219	38	24	12	24	1.89
13895--14063	93	1.8	93	90	0	275	39	24	12	23	1.89
13926--14050	13	9.4	13	72	9	74	40	24	12	24	1.88
13896--14063	20	8.8	20	81	9	206	39	25	12	23	1.89
14063--14124	19	3.2	19	86	4	97	19	12	17	50	1.78
14060--14126	20	3.4	20	85	4	100	19	14	17	47	1.82
14060--14153	34	2.6	35	83	11	102	19	14	20	45	1.85
17508--17603	21	4.6	21	76	2	77	28	12	35	23	1.91
17972--18057	21	4.1	21	82	5	111	33	33	11	20	1.89
18157--18280	42	3.0	42	88	3	173	24	13	36	25	1.92
19450--19474	9	2.8	9	100	0	50	88	0	0	12	0.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20668--20754	22	4.0	22	86	8	106	20	13	47	18	1.83
20860--20989	20	6.5	20	72	3	100	36	13	24	25	1.93
20840--20989	60	2.5	60	86	2	212	36	13	24	26	1.92
20902--21009	40	2.7	40	84	8	139	37	13	24	25	1.92
20882--21010	20	6.4	20	73	10	93	37	13	24	25	1.91
20860--21031	20	8.5	21	70	10	85	36	13	24	26	1.92
21411--21475	23	2.8	23	97	0	121	23	18	27	30	1.97
24071--24114	21	2.1	21	100	0	88	25	27	25	22	2.00
26815--26896	35	2.3	36	87	4	112	39	12	17	31	1.86
27978--28084	24	4.5	24	75	0	106	47	16	14	20	1.82
27978--28086	48	2.3	48	78	0	128	47	16	15	20	1.82
30550--30581	7	4.4	7	92	7	55	25	28	34	12	1.92
30551--30584	15	2.3	15	100	0	68	23	26	35	14	1.94
30573--30637	18	3.9	18	80	19	95	12	21	49	16	1.79
30558--30646	31	2.8	31	91	3	133	16	23	43	15	1.87
30551--30615	8	8.5	8	73	20	59	18	24	41	15	1.89
30584--30620	13	2.8	13	100	0	74	10	24	48	16	1.77
32567--32603	2	18.5	2	100	0	74	51	0	0	48	1.00
32764--32870	24	4.5	24	75	0	106	47	16	14	20	1.82
32764--32872	48	2.3	48	78	0	128	47	16	15	20	1.82
35345--35421	18	4.6	18	79	15	101	11	19	51	16	1.75
35343--35417	31	2.4	32	91	6	127	14	20	49	16	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35339--35399	13	4.3	13	75	24	61	14	19	49	16	1.80
36513--36546	16	2.1	16	88	0	50	32	5	0	61	1.20
36518--36578	24	2.6	22	84	7	68	29	4	1	63	1.24
41278--41335	20	3.0	20	82	10	66	77	6	13	1	1.05
41276--41347	33	2.1	35	82	10	87	76	6	15	1	1.06
43149--43271	31	4.0	31	94	2	203	20	18	22	38	1.94
47261--47414	31	5.0	31	95	1	265	19	18	22	38	1.93
48199--48247	22	2.2	22	92	0	80	36	28	8	26	1.85
49107--49211	36	2.9	36	85	2	138	22	23	12	40	1.88
49125--49582	102	4.5	102	92	0	745	29	20	12	37	1.89
49243--49516	37	7.9	37	65	23	130	29	20	12	37	1.89
49482--49647	65	2.6	65	93	0	287	31	19	12	36	1.89
49365--49682	167	1.9	169	90	1	514	30	20	11	37	1.89
49547--49788	104	2.4	103	80	3	265	26	19	13	40	1.89
49755--49826	37	1.9	37	82	0	90	26	22	11	40	1.87
50329--50455	55	2.3	55	94	0	218	30	28	22	18	1.97
50431--50999	109	5.4	105	81	9	559	32	25	20	21	1.98
51464--51534	35	2.0	35	83	10	90	40	14	14	30	1.85
52091--52132	14	2.9	14	89	3	57	19	0	4	76	0.96
52210--52248	16	2.4	16	86	4	51	33	5	0	61	1.18
52215--52274	23	2.6	22	84	12	68	28	5	1	65	1.23
52204--52256	23	2.3	23	84	15	65	30	3	0	66	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53894--53942	24	2.1	23	88	11	73	12	12	38	36	1.80

Tables:   1

The End!