Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002459.1 Hibiscus syriacus cultivar Beakdansim tig00005033_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99043
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.33
Found at i:2275 original size:3 final size:3
Alignment explanation
Indices: 2267--2322 Score: 62
Period size: 3 Copynumber: 18.3 Consensus size: 3
2257 TGGGTTTAAA
*
2267 ATT ATT ATT ATT ATT ATT ATT ATTT ATCT AATA ATT ATT A-T ATT A-T
1 ATT ATT ATT ATT ATT ATT ATT A-TT AT-T -ATT ATT ATT ATT ATT ATT
2313 ATT ATT ATT A
1 ATT ATT ATT A
2323 ATTTTTTTAT
Statistics
Matches: 46, Mismatches: 2, Indels: 10
0.79 0.03 0.17
Matches are distributed among these distances:
2 4 0.09
3 36 0.78
4 4 0.09
5 2 0.04
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:6620 original size:41 final size:41
Alignment explanation
Indices: 6575--6669 Score: 127
Period size: 41 Copynumber: 2.3 Consensus size: 41
6565 GTCAATACAT
*
6575 AATAGTTCGCCATACGATCCAATTCAACCATGAAAATATAC
1 AATAGTTCACCATACGATCCAATTCAACCATGAAAATATAC
* * * * **
6616 AATAGTTCACTATTCGATTCAATTCAACCATGACAATATTT
1 AATAGTTCACCATACGATCCAATTCAACCATGAAAATATAC
6657 AATAGTTCACCAT
1 AATAGTTCACCAT
6670 TTAACTTGAT
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 46 1.00
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.31
Consensus pattern (41 bp):
AATAGTTCACCATACGATCCAATTCAACCATGAAAATATAC
Found at i:18884 original size:35 final size:36
Alignment explanation
Indices: 18828--18936 Score: 134
Period size: 35 Copynumber: 3.1 Consensus size: 36
18818 TGATATTGCA
* * *
18828 TAGTAGTGTCA-GTGTCACATTTAAATAGTGCACAT
1 TAGTAGTGTCATGTGTCGCATTTAGATAATGCACAT
18863 TAG-AGTGTCATGTGTCGCATTTAGATAATGCACAT
1 TAGTAGTGTCATGTGTCGCATTTAGATAATGCACAT
* * * *
18898 CAGTA-TCTCATGTATCGCATTTAGAGAATGCACAT
1 TAGTAGTGTCATGTGTCGCATTTAGATAATGCACAT
18933 TAGT
1 TAGT
18937 TGTAGTTAGT
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
34 7 0.11
35 56 0.88
36 1 0.02
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (36 bp):
TAGTAGTGTCATGTGTCGCATTTAGATAATGCACAT
Found at i:21110 original size:37 final size:36
Alignment explanation
Indices: 21069--21198 Score: 118
Period size: 37 Copynumber: 3.4 Consensus size: 36
21059 TAGTTATTGT
21069 ATTAGTTTAAAAAACTTTTTTTTTATTTTTGTAATAA
1 ATTAGTTTAAAAAA-TTTTTTTTTATTTTTGTAATAA
***
21106 ATTAGTTTAAATTTTTTATTATTATTATTATTTGTAATAA
1 ATTAGTTTAAAAAATTT-TT-TT-TTATT-TTTGTAATAA
* * *
21146 ATTAGTTTTAAAATATTTTATTATTA-CTTTGTAATAA
1 ATTAG-TTTAAAAAATTTT-TTTTTATTTTTGTAATAA
*
21183 ATTATTTTTAAAAAAT
1 ATTA-GTTTAAAAAAT
21199 AAATTGGATT
Statistics
Matches: 77, Mismatches: 9, Indels: 14
0.77 0.09 0.14
Matches are distributed among these distances:
36 3 0.04
37 36 0.47
38 2 0.03
39 8 0.10
40 17 0.22
41 11 0.14
ACGTcount: A:0.38, C:0.02, G:0.05, T:0.56
Consensus pattern (36 bp):
ATTAGTTTAAAAAATTTTTTTTTATTTTTGTAATAA
Found at i:21146 original size:40 final size:41
Alignment explanation
Indices: 21091--21195 Score: 132
Period size: 37 Copynumber: 2.7 Consensus size: 41
21081 AACTTTTTTT
*
21091 TTATTTTTGTAATAAATTAG-TTT-AAATTTTTTATTATTA
1 TTATTTTTGTAATAAATTAGTTTTAAAATATTTTATTATTA
21130 TTATTATTTGTAATAAATTAGTTTTAAAATA--TT-TTATTA
1 TTATT-TTTGTAATAAATTAGTTTTAAAATATTTTATTATTA
* *
21169 TTA-CTTTGTAATAAATTATTTTTAAAA
1 TTATTTTTGTAATAAATTAGTTTTAAAA
21196 AATAAATTGG
Statistics
Matches: 60, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
37 22 0.37
39 14 0.23
40 17 0.28
41 3 0.05
42 4 0.07
ACGTcount: A:0.37, C:0.01, G:0.05, T:0.57
Consensus pattern (41 bp):
TTATTTTTGTAATAAATTAGTTTTAAAATATTTTATTATTA
Found at i:21165 original size:42 final size:39
Alignment explanation
Indices: 21091--21186 Score: 126
Period size: 40 Copynumber: 2.5 Consensus size: 39
21081 AACTTTTTTT
*
21091 TTATTTTTGTAATAAATTAGTTTAAATTTTTTATTATTA
1 TTATTTTTGTAATAAATTAGTTTAAATATTTTATTATTA
*
21130 TTATTATTTGTAATAAATTAGTTTTAAA-ATATT-TTATTA
1 TTATT-TTTGTAATAAATTAG-TTTAAATATTTTATTATTA
*
21169 TTA-CTTTGTAATAAATTA
1 TTATTTTTGTAATAAATTA
21187 TTTTTAAAAA
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
37 14 0.27
39 14 0.27
40 18 0.35
41 6 0.12
ACGTcount: A:0.36, C:0.01, G:0.05, T:0.57
Consensus pattern (39 bp):
TTATTTTTGTAATAAATTAGTTTAAATATTTTATTATTA
Found at i:21324 original size:78 final size:78
Alignment explanation
Indices: 21226--21378 Score: 243
Period size: 78 Copynumber: 2.0 Consensus size: 78
21216 TCATATCGAC
* *
21226 GTGACGAATTCCAACATCTATATTATTTTAAAATTTTAAAAGCTGCCTGATACCCAAAAAATATA
1 GTGACGAATTCAAACATCTATATTATTTTAAAATTTTAAAAACTGCCTGATACCCAAAAAATATA
21291 AATAACTTGTGAT
66 AATAACTTGTGAT
* * * *
21304 GTGACGAGTTCAAACATCTATATTATTTTAAAATTTTAAAAATTGCTTGATACCCAACAAATATA
1 GTGACGAATTCAAACATCTATATTATTTTAAAATTTTAAAAACTGCCTGATACCCAAAAAATATA
*
21369 AATGACTTGT
66 AATAACTTGT
21379 TGATTTTAAA
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
78 68 1.00
ACGTcount: A:0.41, C:0.14, G:0.10, T:0.35
Consensus pattern (78 bp):
GTGACGAATTCAAACATCTATATTATTTTAAAATTTTAAAAACTGCCTGATACCCAAAAAATATA
AATAACTTGTGAT
Found at i:28523 original size:2 final size:2
Alignment explanation
Indices: 28516--28546 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
28506 GTCAAGTCTG
28516 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
28547 GATCTCCTAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:29257 original size:13 final size:13
Alignment explanation
Indices: 29213--29259 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
29203 CTTTTCTTTG
*
29213 ATATTGAAAACTAA
1 ATATTTAAAA-TAA
29227 ATA-TTAAAATAA
1 ATATTTAAAATAA
*
29239 TTTATTTAAAATAA
1 -ATATTTAAAATAA
29253 ATATTTA
1 ATATTTA
29260 TTTATTATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
12 3 0.11
13 13 0.46
14 12 0.43
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (13 bp):
ATATTTAAAATAA
Found at i:30715 original size:3 final size:3
Alignment explanation
Indices: 30707--30744 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
30697 AATATATATT
30707 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
30745 TGGGTAAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:33479 original size:21 final size:21
Alignment explanation
Indices: 33431--33489 Score: 82
Period size: 21 Copynumber: 2.8 Consensus size: 21
33421 GTCCGAGTTA
33431 CCCGCGACGGCCGCAATAGCG
1 CCCGCGACGGCCGCAATAGCG
* * *
33452 TCTGCGACAGCCGCAATAGCG
1 CCCGCGACGGCCGCAATAGCG
*
33473 CCCGCGACGGCGGCAAT
1 CCCGCGACGGCCGCAAT
33490 CACGGTAAAT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.20, C:0.39, G:0.32, T:0.08
Consensus pattern (21 bp):
CCCGCGACGGCCGCAATAGCG
Found at i:37907 original size:22 final size:21
Alignment explanation
Indices: 37838--37935 Score: 107
Period size: 20 Copynumber: 4.8 Consensus size: 21
37828 CTATCGCAAA
*
37838 TTCGCGTTGCGATTTT-TCAT
1 TTCGCGTTGCGATTTTCTCAG
37858 TTCGCGTTGCGATTTT-TCAG
1 TTCGCGTTGCGATTTTCTCAG
37878 TTCGCGTTGCGATTTTCTACAG
1 TTCGCGTTGCGATTTTCT-CAG
* * *
37900 TT-GTCGTTGTGATTTTCTAAA
1 TTCG-CGTTGCGATTTTCTCAG
37921 TT--CGTTGCGATTTTC
1 TTCGCGTTGCGATTTTC
37936 CAAATTCGTT
Statistics
Matches: 70, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
19 12 0.17
20 35 0.50
21 5 0.07
22 18 0.26
ACGTcount: A:0.12, C:0.18, G:0.21, T:0.48
Consensus pattern (21 bp):
TTCGCGTTGCGATTTTCTCAG
Found at i:37927 original size:19 final size:19
Alignment explanation
Indices: 37903--37950 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
37893 TCTACAGTTG
* *
37903 TCGTTGTGATTTTCTAAAT
1 TCGTTGCGATTTTCCAAAT
37922 TCGTTGCGATTTTCCAAAT
1 TCGTTGCGATTTTCCAAAT
37941 TCGTTGCGAT
1 TCGTTGCGAT
37951 AGTTAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.19, C:0.17, G:0.19, T:0.46
Consensus pattern (19 bp):
TCGTTGCGATTTTCCAAAT
Found at i:38027 original size:6 final size:6
Alignment explanation
Indices: 38016--38048 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
38006 AGACACGTAT
38016 GACCAC GACCAC GACCAC GACCAC GACC-C GACC
1 GACCAC GACCAC GACCAC GACCAC GACCAC GACC
38049 CGAGACGAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.19
6 22 0.81
ACGTcount: A:0.30, C:0.52, G:0.18, T:0.00
Consensus pattern (6 bp):
GACCAC
Found at i:38762 original size:112 final size:112
Alignment explanation
Indices: 38561--39108 Score: 922
Period size: 112 Copynumber: 4.9 Consensus size: 112
38551 GTGATCTACT
* *
38561 GATCTATAACAATATAACAGGT-AAAAAATGACAAAACCGGTCTATAAATAACAAAACAGGTAAA
1 GATCCATAACAATATAACAGGTAAAAAAATGACAAAACCGGTCTATAAATGACAAAACAGGTAAA
*
38625 GCGCTATCAGATATATTGAAAGTGTCGATACTTTATAAAAATGTATC
66 GCGCTACCAGATATATTGAAAGTGTCGATACTTTATAAAAATGTATC
*
38672 GATCCATAACAATATAACAGGTAAAAAAATAACAAAACCGGTCTATAAATGACAAAACAGGTAAA
1 GATCCATAACAATATAACAGGTAAAAAAATGACAAAACCGGTCTATAAATGACAAAACAGGTAAA
* * * *
38737 ACGCTACCAGATATATTGAAAGTGTCTATACTTTATAAAAATATATT
66 GCGCTACCAGATATATTGAAAGTGTCGATACTTTATAAAAATGTATC
*
38784 GATCCATAACAATATAACATGTAAAAAAATGACAAAACCGGTCTATAAATGACAAAACAGGTAAA
1 GATCCATAACAATATAACAGGTAAAAAAATGACAAAACCGGTCTATAAATGACAAAACAGGTAAA
*
38849 GCGCTACC-GAATATATTGAAAGCGTCGATACTTTATAAAAATGTATC
66 GCGCTACCAG-ATATATTGAAAGTGTCGATACTTTATAAAAATGTATC
*
38896 GATCCATAACAATATAACAGGTAAAAAAATGGCAAAACCGGTCTATAAATGACAAAACAGGTAAA
1 GATCCATAACAATATAACAGGTAAAAAAATGACAAAACCGGTCTATAAATGACAAAACAGGTAAA
*
38961 GCACTACC-GAATATATTGAAAGTGTCGATACTTTATAAAAATGTATC
66 GCGCTACCAG-ATATATTGAAAGTGTCGATACTTTATAAAAATGTATC
*
39008 GATCCATAACAATATAACAGGTAAAAAAATGACAAAATCGGTCTATAAATGACAAAACAGGTAAA
1 GATCCATAACAATATAACAGGTAAAAAAATGACAAAACCGGTCTATAAATGACAAAACAGGTAAA
* *
39073 GCGCTACCAGATATGTTGATAGTGTCGATACTTTAT
66 GCGCTACCAGATATATTGAAAGTGTCGATACTTTAT
39109 TATAAGTATC
Statistics
Matches: 410, Mismatches: 24, Indels: 5
0.93 0.05 0.01
Matches are distributed among these distances:
111 22 0.05
112 387 0.94
113 1 0.00
ACGTcount: A:0.47, C:0.15, G:0.14, T:0.24
Consensus pattern (112 bp):
GATCCATAACAATATAACAGGTAAAAAAATGACAAAACCGGTCTATAAATGACAAAACAGGTAAA
GCGCTACCAGATATATTGAAAGTGTCGATACTTTATAAAAATGTATC
Found at i:39286 original size:182 final size:182
Alignment explanation
Indices: 38979--39434 Score: 704
Period size: 182 Copynumber: 2.5 Consensus size: 182
38969 GAATATATTG
*
38979 AAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAATGACAAA
1 AAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAA
* * *
39044 ATCGGTCTATAAATGACAAAACAGGTAAAGCGCTACCAGATATGTTGATAGTGTCGATACTTTAT
66 ACCGGTCTATAAATGACAAAACAGGTAAAGAGCTACCAGATATGTTGAAAGTGTCGATACTTTAT
*
39109 TATAAGTATCGACACTTTTGGAATTTAAAAGAGAAGAAGTTATAGA-ACTAAT
131 TATAAGTATCGACACTTTTGGAATTTAAAAGAAAAGAAGTTATAGAGAC-AAT
* *
39161 AAAGTGTCGATACTTTATAAAAATGTATCGATCTATAACAATATAATAGGTAAAAATATGACAAA
1 AAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAA
* *
39226 ACCGGTCTCA-AAATGACAAAATCA-GTAAAGAGTTACCGGATATGTTGAAAGTGTCGATACTTT
66 ACCGGTCT-ATAAATGACAAAA-CAGGTAAAGAGCTACCAGATATGTTGAAAGTGTCGATACTTT
39289 ATTATAAGTATCGACACTTTTGGAATTTAAAAGAAAAGAAGTTATAGAGACAAT
129 ATTATAAGTATCGACACTTTTGGAATTTAAAAGAAAAGAAGTTATAGAGACAAT
* * *
39343 AAAGTGTCGATACTTTATAAAAATGTATCAATCCATAACAATATAACAGTTAAAAATATGATAAA
1 AAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAA
** * *
39408 ATTGGTCT-TGAAATGATAAAACCGGTA
66 ACCGGTCTAT-AAATGACAAAACAGGTA
39435 GTAAAAAAGT
Statistics
Matches: 250, Mismatches: 18, Indels: 12
0.89 0.06 0.04
Matches are distributed among these distances:
181 1 0.00
182 244 0.98
183 5 0.02
ACGTcount: A:0.44, C:0.11, G:0.16, T:0.29
Consensus pattern (182 bp):
AAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAA
ACCGGTCTATAAATGACAAAACAGGTAAAGAGCTACCAGATATGTTGAAAGTGTCGATACTTTAT
TATAAGTATCGACACTTTTGGAATTTAAAAGAAAAGAAGTTATAGAGACAAT
Found at i:42556 original size:34 final size:35
Alignment explanation
Indices: 42509--42594 Score: 138
Period size: 35 Copynumber: 2.5 Consensus size: 35
42499 CCCGAACCCA
*
42509 AAAATATTTTATATATAATT-AATATAAAAAATAT
1 AAAATATTATATATATAATTAAATATAAAAAATAT
*
42543 AAAATATTATATATATAATTAAATATAAAAAGTAT
1 AAAATATTATATATATAATTAAATATAAAAAATAT
*
42578 AAAATACTATATATATA
1 AAAATATTATATATATA
42595 TAATCGGGGC
Statistics
Matches: 48, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
34 19 0.40
35 29 0.60
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.38
Consensus pattern (35 bp):
AAAATATTATATATATAATTAAATATAAAAAATAT
Found at i:45321 original size:15 final size:14
Alignment explanation
Indices: 45299--45332 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
45289 AAAAATAGAT
45299 AAAAAAATATTAAG
1 AAAAAAATATTAAG
*
45313 AAAATAAATGTTAAG
1 AAAA-AAATATTAAG
45328 AAAAA
1 AAAAA
45333 TACAAAAACT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.71, C:0.00, G:0.09, T:0.21
Consensus pattern (14 bp):
AAAAAAATATTAAG
Found at i:47624 original size:18 final size:18
Alignment explanation
Indices: 47601--47668 Score: 73
Period size: 18 Copynumber: 3.7 Consensus size: 18
47591 AGGGATTATC
47601 AGTGGTCCTTCGGGACAT
1 AGTGGTCCTTCGGGACAT
* * *
47619 AGTGGTTCTTCGGAACAAAC
1 AGTGGTCCTTCGGGAC--AT
*
47639 AATGGTCCTTCGGGACAT
1 AGTGGTCCTTCGGGACAT
*
47657 AGTGGTTCTTCG
1 AGTGGTCCTTCG
47669 AAACAAATAG
Statistics
Matches: 39, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
18 25 0.64
20 14 0.36
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (18 bp):
AGTGGTCCTTCGGGACAT
Found at i:47654 original size:38 final size:38
Alignment explanation
Indices: 47603--47693 Score: 137
Period size: 38 Copynumber: 2.4 Consensus size: 38
47593 GGATTATCAG
*
47603 TGGTCCTTCGGGACATAGTGGTTCTTCGGAACAAACAA
1 TGGTCCTTCGGGACATAGTGGTTCTTCGAAACAAACAA
* *
47641 TGGTCCTTCGGGACATAGTGGTTCTTCGAAACAAATAG
1 TGGTCCTTCGGGACATAGTGGTTCTTCGAAACAAACAA
* *
47679 TGGTTCTTCAGGACA
1 TGGTCCTTCGGGACA
47694 AATATTCAGT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 48 1.00
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (38 bp):
TGGTCCTTCGGGACATAGTGGTTCTTCGAAACAAACAA
Found at i:47680 original size:20 final size:20
Alignment explanation
Indices: 47617--47697 Score: 87
Period size: 20 Copynumber: 4.2 Consensus size: 20
47607 CCTTCGGGAC
47617 ATAGTGGTTCTTCGGAACAA
1 ATAGTGGTTCTTCGGAACAA
* * * *
47637 ACAATGGTCCTTCGGGAC--
1 ATAGTGGTTCTTCGGAACAA
*
47655 ATAGTGGTTCTTCGAAACAA
1 ATAGTGGTTCTTCGGAACAA
47675 ATAGTGGTTCTTCAGG-ACAA
1 ATAGTGGTTCTTC-GGAACAA
47695 ATA
1 ATA
47698 TTCAGTGCCC
Statistics
Matches: 48, Mismatches: 10, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
18 13 0.27
20 34 0.71
21 1 0.02
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.28
Consensus pattern (20 bp):
ATAGTGGTTCTTCGGAACAA
Found at i:47944 original size:22 final size:21
Alignment explanation
Indices: 47903--47944 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
47893 TAAGATCATA
*
47903 TGATAAATGAATAAATGATAG
1 TGATAAAAGAATAAATGATAG
*
47924 TGATAAAAGATATGAATGATA
1 TGATAAAAGA-ATAAATGATA
47945 ATGACATATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.52, C:0.00, G:0.19, T:0.29
Consensus pattern (21 bp):
TGATAAAAGAATAAATGATAG
Found at i:49353 original size:3 final size:3
Alignment explanation
Indices: 49312--49363 Score: 52
Period size: 3 Copynumber: 17.3 Consensus size: 3
49302 AAAAATAAAA
* * * *
49312 AAT ATT AAT ATT AAT ATT AAT ATT AAT AA- AAT AAAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT
49357 AAT AAT A
1 AAT AAT A
49364 TAGTAAAAAA
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
2 2 0.05
3 34 0.87
4 3 0.08
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
AAT
Found at i:49470 original size:37 final size:37
Alignment explanation
Indices: 49377--49676 Score: 258
Period size: 37 Copynumber: 7.9 Consensus size: 37
49367 TAAAAAATCA
* * *
49377 TTTTTAAAACTATATATTATATATGTTTTTAAAAATTG
1 TTTTCAAAACTATATAATATATAT-ATTTTAAAAATTG
*
49415 TTTTCAAAACCATATAATATATATATTTTCAAAAATTG
1 TTTTCAAAACTATATAATATATATATTTT-AAAAATTG
*
49453 TTTT-AAAACTATAT-A-ATATAT-TTTT-AAAATTA
1 TTTTCAAAACTATATAATATATATATTTTAAAAATTG
*
49485 TTTTCAAAAACTATATATCATATATATATATATATATTCAAAA-TA
1 TTTTC-AAAACTATATA--ATATATATAT-T-T-TA---AAAATTG
*
49530 TTTTCAAAACTATATAATATATATATTTTCAAAA-TG
1 TTTTCAAAACTATATAATATATATATTTTAAAAATTG
* * *
49566 TTTTCAAAAACTATATATTATATATGTTTTTAAAA-TG
1 TTTTC-AAAACTATATAATATATATATTTTAAAAATTG
* * *
49603 TTTTCAAAAACTATATATTATATATGTTTTTAAAA-TG
1 TTTTC-AAAACTATATAATATATATATTTTAAAAATTG
* *
49640 TTTTCAAAAACTAGTTATTATATATATATTTCAAAAA
1 TTTTC-AAAACTA--TATAATATATATATTTTAAAAA
49677 CTGATTTTTT
Statistics
Matches: 228, Mismatches: 16, Indels: 35
0.82 0.06 0.13
Matches are distributed among these distances:
32 10 0.04
34 14 0.06
35 6 0.03
36 11 0.05
37 92 0.40
38 39 0.17
39 19 0.08
40 2 0.01
41 2 0.01
42 11 0.05
44 11 0.05
45 7 0.03
46 4 0.02
ACGTcount: A:0.44, C:0.07, G:0.03, T:0.46
Consensus pattern (37 bp):
TTTTCAAAACTATATAATATATATATTTTAAAAATTG
Found at i:49545 original size:115 final size:115
Alignment explanation
Indices: 49415--49627 Score: 324
Period size: 115 Copynumber: 1.8 Consensus size: 115
49405 TTAAAAATTG
49415 TTTTCAAAACCATATAATATATATATTTTCAAAAATTGTTTT-AAAACTATATA-ATATA-TTTT
1 TTTTCAAAACCATATAATATATATATTTTC-AAAA-TGTTTTAAAAACTATATATATATAGTTTT
49477 TAAAATTATTTTCAAAAACTATATATCATATATATATATATATATTCAAAATA
64 TAAAA-TATTTTCAAAAACTATATATCATATATATATATATATATTCAAAATA
*
49530 TTTTCAAAACTATATAATATATATATTTTCAAAATGTTTTCAAAAACTATATATTATATATGTTT
1 TTTTCAAAACCATATAATATATATATTTTCAAAATGTTTT-AAAAACTATATA-TATATA-GTTT
* *
49595 TTAAAATGTTTTCAAAAACTATATATTATATAT
63 TTAAAATATTTTCAAAAACTATATATCATATAT
49628 GTTTTTAAAA
Statistics
Matches: 89, Mismatches: 3, Indels: 9
0.88 0.03 0.09
Matches are distributed among these distances:
113 6 0.07
114 4 0.04
115 40 0.45
117 5 0.06
118 25 0.28
119 9 0.10
ACGTcount: A:0.45, C:0.08, G:0.02, T:0.46
Consensus pattern (115 bp):
TTTTCAAAACCATATAATATATATATTTTCAAAATGTTTTAAAAACTATATATATATAGTTTTTA
AAATATTTTCAAAAACTATATATCATATATATATATATATATTCAAAATA
Found at i:50494 original size:86 final size:85
Alignment explanation
Indices: 50345--50564 Score: 278
Period size: 86 Copynumber: 2.6 Consensus size: 85
50335 GGTTGATGCG
* * * * * ** *
50345 CCCTCGAGCTGAATGAAATCGAACTTGAAAGTCTTCAATGACAGATATCCCTTCTCGCCTTGAGC
1 CCCTTGAGCTGAATGTAATCGAACTCGAAGGTTTTCGTTGACAGATAACCCTTCTCGCCTTGAGC
* *
50410 TATGTTGTAAATTTAATATG
66 TAAGTTGTAAATTTAATATA
* * * *
50430 CTCTTGAGCTGAATGTAATTGAAACTCGAAGGTTTTCGTTGACATATAACCCTTCTCTCCTTGAG
1 CCCTTGAGCTGAATGTAATCG-AACTCGAAGGTTTTCGTTGACAGATAACCCTTCTCGCCTTGAG
*
50495 TTAAGTTGTAAATTTAATATA
65 CTAAGTTGTAAATTTAATATA
* *
50516 CCCTTGAGCTGAATGTAATCGAACTCGAAGGTTTTCGTTAATAGATAAC
1 CCCTTGAGCTGAATGTAATCGAACTCGAAGGTTTTCGTTGACAGATAAC
50565 TGTTGAGTTA
Statistics
Matches: 114, Mismatches: 20, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
85 42 0.37
86 72 0.63
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.34
Consensus pattern (85 bp):
CCCTTGAGCTGAATGTAATCGAACTCGAAGGTTTTCGTTGACAGATAACCCTTCTCGCCTTGAGC
TAAGTTGTAAATTTAATATA
Found at i:54075 original size:20 final size:20
Alignment explanation
Indices: 53999--54083 Score: 62
Period size: 20 Copynumber: 4.0 Consensus size: 20
53989 AACAGAACCC
*
53999 CAGGGGGGTATCGATTCCCAT
1 CAGGGGGGAATCGATTCCC-T
** * *
54020 GTGGGAGGAATCGGTTCCCCTT
1 CAGGGGGGAATCGATT-CCC-T
* *
54042 CAAAGGGGGAATCGGTTCCCT
1 C-AGGGGGGAATCGATTCCCT
*
54063 CAGGGGGGGATCGATTCCCT
1 CAGGGGGGAATCGATTCCCT
54083 C
1 C
54084 TGCACCAAAA
Statistics
Matches: 49, Mismatches: 13, Indels: 5
0.73 0.19 0.07
Matches are distributed among these distances:
20 17 0.35
21 13 0.27
22 7 0.14
23 12 0.24
ACGTcount: A:0.18, C:0.25, G:0.35, T:0.22
Consensus pattern (20 bp):
CAGGGGGGAATCGATTCCCT
Found at i:57741 original size:25 final size:24
Alignment explanation
Indices: 57694--57741 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
57684 GATTTTGAAT
* * *
57694 TTCCACCTTTTTCAAAATGTTTTG
1 TTCCAACTTTATCAAAAAGTTTTG
57718 TTCCAACTTTATCAAAAAAGTTTT
1 TTCCAACTTTATC-AAAAAGTTTT
57742 AAGATCATCA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.29, C:0.19, G:0.06, T:0.46
Consensus pattern (24 bp):
TTCCAACTTTATCAAAAAGTTTTG
Found at i:60361 original size:85 final size:85
Alignment explanation
Indices: 60218--61089 Score: 1210
Period size: 85 Copynumber: 10.3 Consensus size: 85
60208 TCAACAATAA
* * * *
60218 CCCTTCTCGCCTTGAGCTATGTTGTAAATTGGATATGCCCTTGAACTGAATATAATCGAACTCGA
1 CCCTTCTCGCCTTGAGCTATGCTGTAAATTTGATATGCCCTTGAGCTGAATGTAATCGAACTCGA
60283 AGGTTTTTGTTGACAGATAG
66 AGGTTTTTGTTGACAGATAG
* * * * *
60303 CCCTTCTCGCCTTGACCTATGTTATAAATTTGATATGCCCTTGAGTTGAATGTAATCGAACTTGA
1 CCCTTCTCGCCTTGAGCTATGCTGTAAATTTGATATGCCCTTGAGCTGAATGTAATCGAACTCGA
* * *
60368 AGGTTTTTGCT-AAATGATAT
66 AGGTTTTTGTTGACA-GATAG
** *
60388 CCCTTCTCGCCTTGAGCTATGCTGTAAATTTGATATGCCCTAAAGCTGAATGTAATTGAACTCGA
1 CCCTTCTCGCCTTGAGCTATGCTGTAAATTTGATATGCCCTTGAGCTGAATGTAATCGAACTCGA
* * *
60453 AGGTTTTTGCTAACATATAG
66 AGGTTTTTGTTGACAGATAG
* * * * *
60473 CACTTTTCGCCTTAAGCTATGCAGTAAATTTGATATGCCCTTGAGCTGAATGTAATCGAACTTGA
1 CCCTTCTCGCCTTGAGCTATGCTGTAAATTTGATATGCCCTTGAGCTGAATGTAATCGAACTCGA
* * *
60538 AGGTTTTT-TTTACTGGTAG
66 AGGTTTTTGTTGACAGATAG
* * *
60557 CCCTTCTCGCCTTAAGCTATGCTGTAAATTTGATATGCCCTTAAGCTGAATGTAATCGAACTCAA
1 CCCTTCTCGCCTTGAGCTATGCTGTAAATTTGATATGCCCTTGAGCTGAATGTAATCGAACTCGA
** *
60622 AGGTTTTTCCTGACAGATAA
66 AGGTTTTTGTTGACAGATAG
* * * * *
60642 CCCTTCTCGCCTTGAGTTATGTTGTAAATTTGATATGCCCTTAAGCTAAATGTAATCGAACGCGA
1 CCCTTCTCGCCTTGAGCTATGCTGTAAATTTGATATGCCCTTGAGCTGAATGTAATCGAACTCGA
* *
60707 AGGTTTTTGTTGATAGATAT
66 AGGTTTTTGTTGACAGATAG
* * * * *
60727 CCCTTCTCGCCTTGAGTTATGATGTAAATTTGATATTCCCTTGAGTTGAATGTAATTGAACTCGA
1 CCCTTCTCGCCTTGAGCTATGCTGTAAATTTGATATGCCCTTGAGCTGAATGTAATCGAACTCGA
60792 AGGTTTTTGTTGACAGATAG
66 AGGTTTTTGTTGACAGATAG
* *
60812 CCCTTCTCGCCTTGAGCTATGCTGTAAATTTGATATGACCTTGAGCTGAATGTAATCGAACTCAA
1 CCCTTCTCGCCTTGAGCTATGCTGTAAATTTGATATGCCCTTGAGCTGAATGTAATCGAACTCGA
60877 AGGTTTTTGTTGACAGATAG
66 AGGTTTTTGTTGACAGATAG
*
60897 CCCTTCTCGCCTTGAGCTATGCTGTAAATTTGATATACCCTTGAGCTGAATGTAATCGAACTCGA
1 CCCTTCTCGCCTTGAGCTATGCTGTAAATTTGATATGCCCTTGAGCTGAATGTAATCGAACTCGA
60962 AGGTTTTTGTTGACAGATAG
66 AGGTTTTTGTTGACAGATAG
* * * *
60982 CCCTTCTCCCCTTGAGCTATGTTGTAAATTTGATATGCCCTTGAGTTGCATGTAATCGAACTCGA
1 CCCTTCTCGCCTTGAGCTATGCTGTAAATTTGATATGCCCTTGAGCTGAATGTAATCGAACTCGA
* *
61047 AGGTTTTTGCTGATAGATA-
66 AGGTTTTTGTTGACAGATAG
* * *
61066 ACCTTCTCGCCCTGAGTTATGCTG
1 CCCTTCTCGCCTTGAGCTATGCTG
61090 CGAATAGTTT
Statistics
Matches: 698, Mismatches: 86, Indels: 7
0.88 0.11 0.01
Matches are distributed among these distances:
84 94 0.13
85 602 0.86
86 2 0.00
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (85 bp):
CCCTTCTCGCCTTGAGCTATGCTGTAAATTTGATATGCCCTTGAGCTGAATGTAATCGAACTCGA
AGGTTTTTGTTGACAGATAG
Found at i:61073 original size:424 final size:424
Alignment explanation
Indices: 60214--61086 Score: 1302
Period size: 424 Copynumber: 2.1 Consensus size: 424
60204 TGTTTCAACA
* *
60214 ATAACCCTTCTCGCCTTGAGCTATGTTGTAAATTGGATATGCCCTTGAACTGAATATAATCGAAC
1 ATAACCCTTCTCGCCTTGAGTTATGTTGTAAATTGGATATGCCCTTGAACTAAATATAATCGAAC
* *
60279 TCGAAGGTTTTTGTTGACAGATAGCCCTTCTCGCCTTGACCTATGTTATAAATTTGATATGCCCT
66 GCGAAGGTTTTTGTTGACAGATAGCCCTTCTCGCCTTGACCTATGATATAAATTTGATATGCCCT
* *
60344 TGAGTTGAATGTAATCGAACTTGAAGGTTTTTGCTAAATGATATCCCTTCTCGCCTTGAGCTATG
131 TGAGTTGAATGTAATCGAACTCGAAGGTTTTTGCTAAATGATAGCCCTTCTCGCCTTGAGCTATG
* * * *
60409 CTGTAAATTTGATATGCCCTAAAGCTGAATGTAATTGAACTCGAAGGTTTTTGCTAACATATAGC
196 CTGTAAATTTGATATGACCTAAAGCTGAATGTAATCGAACTCAAAGGTTTTTGCTAACAGATAGC
* * *
60474 ACTTTTCGCCTTAAGCTATGCAGTAAATTTGATATGCCCTTGAGCTGAATGTAATCGAACTTGAA
261 ACTTCTCGCCTTAAGCTATGCAGTAAATTTGATATACCCTTGAGCTGAATGTAATCGAACTCGAA
* * * *
60539 GGTTTTTTTTACTGGTAGCCCTTCTCGCCTTAAGCTATGCTGTAAATTTGATATGCCCTTAAGCT
326 GGTTTTTTTGACAGATAGCCCTTCTCCCCTTAAGCTATGCTGTAAATTTGATATGCCCTTAAGCT
60604 GAATGTAATCGAACTCAAAGGTTTTTCCTGACAG
391 GAATGTAATCGAACTCAAAGGTTTTTCCTGACAG
* *
60638 ATAACCCTTCTCGCCTTGAGTTATGTTGTAAATTTGATATGCCCTT-AAGCTAAATGTAATCGAA
1 ATAACCCTTCTCGCCTTGAGTTATGTTGTAAATTGGATATGCCCTTGAA-CTAAATATAATCGAA
* * ** * *
60702 CGCGAAGGTTTTTGTTGATAGATATCCCTTCTCGCCTTGAGTTATGATGTAAATTTGATATTCCC
65 CGCGAAGGTTTTTGTTGACAGATAGCCCTTCTCGCCTTGACCTATGATATAAATTTGATATGCCC
* * *
60767 TTGAGTTGAATGTAATTGAACTCGAAGGTTTTTGTTGACA-GATAGCCCTTCTCGCCTTGAGCTA
130 TTGAGTTGAATGTAATCGAACTCGAAGGTTTTTGCT-AAATGATAGCCCTTCTCGCCTTGAGCTA
** * *
60831 TGCTGTAAATTTGATATGACCTTGAGCTGAATGTAATCGAACTCAAAGGTTTTTGTTGACAGATA
194 TGCTGTAAATTTGATATGACCTAAAGCTGAATGTAATCGAACTCAAAGGTTTTTGCTAACAGATA
* * *
60896 GCCCTTCTCGCCTTGAGCTATGCTGTAAATTTGATATACCCTTGAGCTGAATGTAATCGAACTCG
259 GCACTTCTCGCCTTAAGCTATGCAGTAAATTTGATATACCCTTGAGCTGAATGTAATCGAACTCG
* * *
60961 AAGGTTTTTGTTGACAGATAGCCCTTCTCCCCTTGAGCTATGTTGTAAATTTGATATGCCCTTGA
324 AAGGTTTTT-TTGACAGATAGCCCTTCTCCCCTTAAGCTATGCTGTAAATTTGATATGCCCTTAA
* * * * *
61026 GTTGCATGTAATCGAACTCGAAGGTTTTTGCTGATAG
388 GCTGAATGTAATCGAACTCAAAGGTTTTTCCTGACAG
*
61063 ATAA-CCTTCTCGCCCTGAGTTATG
1 ATAACCCTTCTCGCCTTGAGTTATG
61087 CTGCGAATAG
Statistics
Matches: 402, Mismatches: 44, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
423 2 0.00
424 314 0.78
425 86 0.21
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.36
Consensus pattern (424 bp):
ATAACCCTTCTCGCCTTGAGTTATGTTGTAAATTGGATATGCCCTTGAACTAAATATAATCGAAC
GCGAAGGTTTTTGTTGACAGATAGCCCTTCTCGCCTTGACCTATGATATAAATTTGATATGCCCT
TGAGTTGAATGTAATCGAACTCGAAGGTTTTTGCTAAATGATAGCCCTTCTCGCCTTGAGCTATG
CTGTAAATTTGATATGACCTAAAGCTGAATGTAATCGAACTCAAAGGTTTTTGCTAACAGATAGC
ACTTCTCGCCTTAAGCTATGCAGTAAATTTGATATACCCTTGAGCTGAATGTAATCGAACTCGAA
GGTTTTTTTGACAGATAGCCCTTCTCCCCTTAAGCTATGCTGTAAATTTGATATGCCCTTAAGCT
GAATGTAATCGAACTCAAAGGTTTTTCCTGACAG
Found at i:62448 original size:99 final size:99
Alignment explanation
Indices: 62329--62508 Score: 281
Period size: 99 Copynumber: 1.8 Consensus size: 99
62319 TAATTTGCCA
* * * *
62329 TTATCTGGTTAGCTGAATCTTATCCATAAAGTCGG-GTTGTTTAACCAATTGCTCTAGAGGGACA
1 TTATCAGGCTAGCTGAATCTTATCCATAAAGCCGGAG-CGTTTAACCAATTGCTCTAGAGGGACA
62393 GCTCAAGCTTTATTGTAAATATATTATAATCACAT
65 GCTCAAGCTTTATTGTAAATATATTATAATCACAT
* *
62428 TTATCAGGCTAGCTGAATCTTATCCATAAAGCCGGAGCGTTTAACCAATTGCTCTAGAGGTACAT
1 TTATCAGGCTAGCTGAATCTTATCCATAAAGCCGGAGCGTTTAACCAATTGCTCTAGAGGGACAG
*
62493 CTCAGGCTTTATTGTA
66 CTCAAGCTTTATTGTA
62509 TACATATAAT
Statistics
Matches: 73, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
99 72 0.99
100 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.34
Consensus pattern (99 bp):
TTATCAGGCTAGCTGAATCTTATCCATAAAGCCGGAGCGTTTAACCAATTGCTCTAGAGGGACAG
CTCAAGCTTTATTGTAAATATATTATAATCACAT
Found at i:65233 original size:5 final size:5
Alignment explanation
Indices: 65214--65246 Score: 50
Period size: 5 Copynumber: 6.6 Consensus size: 5
65204 AAAAAAAAGA
65214 AAAAT AAAAT AAAAT AAAAT AAAGAT -AAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAA-AT AAAAT AAA
65247 TTGAGAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
4 2 0.08
5 22 0.85
6 2 0.08
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:66588 original size:18 final size:18
Alignment explanation
Indices: 66565--66605 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
66555 GAAAATAAAC
*
66565 AAATAAAAAATATTAATA
1 AAATAAAAAATAATAATA
*
66583 AAATAAATAATAATAATA
1 AAATAAAAAATAATAATA
*
66601 TAATA
1 AAATA
66606 TATAGTAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (18 bp):
AAATAAAAAATAATAATA
Found at i:66824 original size:2 final size:2
Alignment explanation
Indices: 66813--66850 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
66803 TTTTCAAAAC
66813 TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
66851 TCAAAAATGT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:66827 original size:38 final size:37
Alignment explanation
Indices: 66613--66828 Score: 193
Period size: 38 Copynumber: 5.9 Consensus size: 37
66603 ATATATAGTA
*
66613 AAAAATCATTTTTAAAACTATATAT-TATATATGCTTTT
1 AAAAAT-ATTTTCAAAACTATATATATATATATG-TTTT
* *
66651 AAAAATTGTTTTCAAAACCATATAATATATATAT-TTTT
1 AAAAA-TATTTTCAAAACTATAT-ATATATATATGTTTT
66689 AAAAATCATTTT-AAAAC--TATATA-ATATATGTTTT
1 AAAAAT-ATTTTCAAAACTATATATATATATATGTTTT
* **
66723 CAAAAAAAAAATT-AAAAC--TATATA-ATATAT-TTTT
1 --AAAAATATTTTCAAAACTATATATATATATATGTTTT
*
66757 AAAATTATTTTCAAAAACTATATATTATATATATGTTTT
1 AAAAATATTTTC-AAAACTATATA-TATATATATGTTTT
*
66796 CAAAATATTTTCAAAACTATATAATATATATAT
1 AAAAATATTTTCAAAACTATAT-ATATATATAT
66829 ATATATATAT
Statistics
Matches: 150, Mismatches: 13, Indels: 30
0.78 0.07 0.16
Matches are distributed among these distances:
32 7 0.05
33 6 0.04
34 16 0.11
35 23 0.15
36 9 0.06
37 8 0.05
38 56 0.37
39 18 0.12
40 7 0.05
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.44
Consensus pattern (37 bp):
AAAAATATTTTCAAAACTATATATATATATATGTTTT
Found at i:66864 original size:57 final size:55
Alignment explanation
Indices: 66775--66885 Score: 159
Period size: 57 Copynumber: 2.0 Consensus size: 55
66765 TTTCAAAAAC
* *
66775 TATATATTATATATATGTTTTCAAAATATTTTCAAAACTATATAATATATATATA
1 TATATATTATATATATATATTCAAAATATTTTCAAAACTATATAATATATATATA
* * *
66830 TATATATATATATATATATATTCAAAAATGTTTTCAAAATTTTATAATATATATAT
1 TATATAT-TATATATATATATTC-AAAATATTTTCAAAACTATATAATATATATAT
66886 TTTCAAAAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
55 7 0.14
56 13 0.27
57 29 0.59
ACGTcount: A:0.46, C:0.05, G:0.02, T:0.48
Consensus pattern (55 bp):
TATATATTATATATATATATTCAAAATATTTTCAAAACTATATAATATATATATA
Found at i:66891 original size:37 final size:36
Alignment explanation
Indices: 66831--66967 Score: 111
Period size: 37 Copynumber: 3.7 Consensus size: 36
66821 ATATATATAT
*
66831 ATATATATATATATATATATTCAAAAATGTTTTCAAA
1 ATATATA-ATATATATATTTTCAAAAATGTTTTCAAA
* ***
66868 ATTTTATAATATATATATTTTCAAAAA-AAATTCAAA
1 A-TATATAATATATATATTTTCAAAAATGTTTTCAAA
**
66904 A-ACTAT-ATATGATATATGTTTTTAAAATGTTTTCAAAA
1 ATA-TATAATAT-ATATAT-TTTCAAAAATGTTTTC-AAA
*
66942 ACTATATATTATATATA-TTTCAAAAA
1 A-TATATAATATATATATTTTCAAAAA
66968 CCGATTTTTT
Statistics
Matches: 77, Mismatches: 14, Indels: 18
0.71 0.13 0.17
Matches are distributed among these distances:
34 4 0.05
35 9 0.12
36 14 0.18
37 29 0.38
38 9 0.12
39 8 0.10
40 4 0.05
ACGTcount: A:0.48, C:0.06, G:0.03, T:0.43
Consensus pattern (36 bp):
ATATATAATATATATATTTTCAAAAATGTTTTCAAA
Found at i:69466 original size:21 final size:18
Alignment explanation
Indices: 69441--69484 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 18
69431 AATGAACCGG
69441 CGGTTCATACCGGTTTTCAGC
1 CGGTTCA-ACCGGTTTT-A-C
*
69462 CGGTTCACCCGGTTTTAC
1 CGGTTCAACCGGTTTTAC
69480 CGGTT
1 CGGTT
69485 TTCAGCCGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 6 0.27
19 1 0.05
20 8 0.36
21 7 0.32
ACGTcount: A:0.11, C:0.30, G:0.25, T:0.34
Consensus pattern (18 bp):
CGGTTCAACCGGTTTTAC
Found at i:70457 original size:34 final size:34
Alignment explanation
Indices: 70414--70482 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
70404 GACGTTTGAA
70414 GTTTTCGGATACTGTAAGTTATCTCGTAAAATCT
1 GTTTTCGGATACTGTAAGTTATCTCGTAAAATCT
70448 GTTTTCGGATACTGTAAGTTATCTCGTAAAATCT
1 GTTTTCGGATACTGTAAGTTATCTCGTAAAATCT
70482 G
1 G
70483 GAGTTCAATC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.26, C:0.14, G:0.19, T:0.41
Consensus pattern (34 bp):
GTTTTCGGATACTGTAAGTTATCTCGTAAAATCT
Found at i:73557 original size:27 final size:26
Alignment explanation
Indices: 73519--73595 Score: 106
Period size: 24 Copynumber: 3.0 Consensus size: 26
73509 TCATTTAAAT
73519 TTATTATTATTATTAAA-T-TTATTA
1 TTATTATTATTATTAAATTATTATTA
73543 TTATTATTATTATTAAA-TATTATTA
1 TTATTATTATTATTAAATTATTATTA
*
73568 TTAGTATATTATTATTAAATAATTATTA
1 TTA-T-TATTATTATTAAATTATTATTA
73596 CAAGCCCAAA
Statistics
Matches: 48, Mismatches: 1, Indels: 4
0.91 0.02 0.08
Matches are distributed among these distances:
24 18 0.38
25 9 0.19
26 1 0.02
27 13 0.27
28 7 0.15
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.58
Consensus pattern (26 bp):
TTATTATTATTATTAAATTATTATTA
Found at i:73595 original size:3 final size:3
Alignment explanation
Indices: 73519--73584 Score: 73
Period size: 3 Copynumber: 22.0 Consensus size: 3
73509 TCATTTAAAT
* *
73519 TTA TTA TTA TTA TTA -AA TTTA TTA TTA TTA TTA TTA TTAA ATA TTA
1 TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TT-A TTA TTA
*
73565 TTA TTA GTA -TA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA
73585 AATAATTATT
Statistics
Matches: 54, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
2 3 0.06
3 48 0.89
4 3 0.06
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:75928 original size:20 final size:21
Alignment explanation
Indices: 75905--75956 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 21
75895 AGAAATTAAA
75905 AATTCATTTATTT-AATTTTT
1 AATTCATTTATTTAAATTTTT
* *
75925 AATTCTTTTCTTTCAAATTTTT
1 AATTCATTTATTT-AAATTTTT
75947 -ATT-ATTTATT
1 AATTCATTTATT
75957 ATTTTAATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
20 16 0.62
21 3 0.12
22 7 0.27
ACGTcount: A:0.27, C:0.08, G:0.00, T:0.65
Consensus pattern (21 bp):
AATTCATTTATTTAAATTTTT
Found at i:78024 original size:7 final size:7
Alignment explanation
Indices: 77989--78030 Score: 59
Period size: 7 Copynumber: 6.0 Consensus size: 7
77979 TTTTCATACA
77989 TGCATTT
1 TGCATTT
77996 T-CATTT
1 TGCATTT
78002 TGCATCTT
1 TGCAT-TT
78010 TGCATTT
1 TGCATTT
*
78017 TTCATTT
1 TGCATTT
78024 TGCATTT
1 TGCATTT
78031 ATACTTTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 6 0.19
7 18 0.58
8 7 0.23
ACGTcount: A:0.14, C:0.17, G:0.10, T:0.60
Consensus pattern (7 bp):
TGCATTT
Found at i:80277 original size:2 final size:2
Alignment explanation
Indices: 80270--80313 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
80260 TTATCCTTTA
80270 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
80312 AT
1 AT
80314 CCTTTGTTGT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:80627 original size:18 final size:18
Alignment explanation
Indices: 80604--80640 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
80594 ATACTCATCC
*
80604 AGCAAAGAAAGAAGAAAA
1 AGCAAAAAAAGAAGAAAA
80622 AGCAAAAAAAGAAGAAAA
1 AGCAAAAAAAGAAGAAAA
80640 A
1 A
80641 AAAAGAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.76, C:0.05, G:0.19, T:0.00
Consensus pattern (18 bp):
AGCAAAAAAAGAAGAAAA
Found at i:80639 original size:10 final size:10
Alignment explanation
Indices: 80611--80651 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
80601 TCCAGCAAAG
80611 AAAGAAG-AA
1 AAAGAAGAAA
*
80620 AAAGCA-AAA
1 AAAGAAGAAA
80629 AAAGAAGAAA
1 AAAGAAGAAA
*
80639 AAAAAAGAAA
1 AAAGAAGAAA
80649 AAA
1 AAA
80652 AAAGGAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
9 12 0.44
10 15 0.56
ACGTcount: A:0.83, C:0.02, G:0.15, T:0.00
Consensus pattern (10 bp):
AAAGAAGAAA
Found at i:80641 original size:13 final size:12
Alignment explanation
Indices: 80625--80654 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
80615 AAGAAAAAGC
80625 AAAAAAAGAAGAA
1 AAAAAAAGAA-AA
80638 AAAAAAAGAAAA
1 AAAAAAAGAAAA
80650 AAAAA
1 AAAAA
80655 GGAAAATTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.41
13 10 0.59
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (12 bp):
AAAAAAAGAAAA
Found at i:80642 original size:21 final size:20
Alignment explanation
Indices: 80607--80652 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 20
80597 CTCATCCAGC
*
80607 AAAGAAAGAAGAAAAAGCAAAA
1 AAAG-AAGAAAAAAAAG-AAAA
80629 AAAGAAGAAAAAAAAAGAAAA
1 AAAGAAG-AAAAAAAAGAAAA
80650 AAA
1 AAA
80653 AAGGAAAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.83, C:0.02, G:0.15, T:0.00
Consensus pattern (20 bp):
AAAGAAGAAAAAAAAGAAAA
Found at i:80649 original size:18 final size:19
Alignment explanation
Indices: 80607--80649 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
80597 CTCATCCAGC
*
80607 AAAG-AAAGAAGAAAAAGC
1 AAAGAAAAGAAGAAAAAGA
80625 AAA-AAAAGAAGAAAAA-A
1 AAAGAAAAGAAGAAAAAGA
80642 AAAGAAAA
1 AAAGAAAA
80650 AAAAAGGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 3 0.14
18 19 0.86
ACGTcount: A:0.81, C:0.02, G:0.16, T:0.00
Consensus pattern (19 bp):
AAAGAAAAGAAGAAAAAGA
Found at i:80652 original size:10 final size:10
Alignment explanation
Indices: 80618--80660 Score: 59
Period size: 11 Copynumber: 4.0 Consensus size: 10
80608 AAGAAAGAAG
80618 AAAAAGCAAAA
1 AAAAAG-AAAA
80629 AAAGAAGAAAA
1 AAA-AAGAAAA
80640 AAAAAGAAAA
1 AAAAAGAAAA
80650 AAAAAGGAAAA
1 AAAAA-GAAAA
80661 TTGAATCAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
10 12 0.40
11 15 0.50
12 3 0.10
ACGTcount: A:0.84, C:0.02, G:0.14, T:0.00
Consensus pattern (10 bp):
AAAAAGAAAA
Found at i:80659 original size:21 final size:22
Alignment explanation
Indices: 80618--80660 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 22
80608 AAGAAAGAAG
80618 AAAAAGCAAAAAAAGAAGAAAA
1 AAAAAGCAAAAAAAGAAGAAAA
*
80640 AAAAAG-AAAAAAA-AAGGAAA
1 AAAAAGCAAAAAAAGAAGAAAA
80660 A
1 A
80661 TTGAATCAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 7 0.35
21 7 0.35
22 6 0.30
ACGTcount: A:0.84, C:0.02, G:0.14, T:0.00
Consensus pattern (22 bp):
AAAAAGCAAAAAAAGAAGAAAA
Found at i:85207 original size:50 final size:53
Alignment explanation
Indices: 85079--85217 Score: 176
Period size: 54 Copynumber: 2.7 Consensus size: 53
85069 GAAATCTTGG
* *
85079 CAGAAGCCATAGGAAAGGATGAATGTGTTGTCAAATATTTTACGAACATTTGAA
1 CAGAAGCCACAGGAAAGGATGAATGTGTTGTCAAATATTTTACGAACA-TCGAA
* * *
85133 CAGAAGCCACAGGAAAGGATGAATGTGTTGTCAAGTGTTTTAC-ATC-TCG-A
1 CAGAAGCCACAGGAAAGGATGAATGTGTTGTCAAATATTTTACGAACATCGAA
* * *
85183 CAGAAACCACAGGAAAAGATGAATGTATTGTCAAA
1 CAGAAGCCACAGGAAAGGATGAATGTGTTGTCAAA
85218 CGTTTTATGA
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
50 32 0.42
51 2 0.03
53 2 0.03
54 40 0.53
ACGTcount: A:0.39, C:0.14, G:0.23, T:0.24
Consensus pattern (53 bp):
CAGAAGCCACAGGAAAGGATGAATGTGTTGTCAAATATTTTACGAACATCGAA
Found at i:85618 original size:22 final size:22
Alignment explanation
Indices: 85590--85644 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
85580 ATCTACACTC
*
85590 TTCAAAGATGACAAATTTTCTT
1 TTCAAAGATGACAAATTCTCTT
* * *
85612 TTTAAAGATGATAGATTCTCTT
1 TTCAAAGATGACAAATTCTCTT
85634 TTCAAAGATGA
1 TTCAAAGATGA
85645 AAGCTTTATG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.36, C:0.11, G:0.13, T:0.40
Consensus pattern (22 bp):
TTCAAAGATGACAAATTCTCTT
Found at i:86446 original size:76 final size:76
Alignment explanation
Indices: 86320--87111 Score: 1473
Period size: 76 Copynumber: 10.5 Consensus size: 76
86310 CTATTTCCCA
86320 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
86385 AGCCTTCGGGT
66 AGCCTTCGGGT
86396 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTC-A
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
86460 AGCCTTCGGGT
66 AGCCTTCGGGT
*
86471 CATCTGTAAGCCCTTCAGTGCATGATGTTTCC-AAAAGCCTTCGGGAGC-TTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
86534 AGCCTTCGGGT
66 AGCCTTCGGGT
86545 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
86610 AGCCTTCGGGT
66 AGCCTTCGGGT
86621 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
86686 AGCCTTCGGGT
66 AGCCTTCGGGT
86697 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
86762 AGCCTTCGGGT
66 AGCCTTCGGGT
* *
86773 CATCTGTAAGCCCTTTAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
86838 AGCCTTCGGGT
66 AGCCTTCGGGT
* *
86849 CATCTGTAAGCCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGAAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
86914 AGCCTTCGGGT
66 AGCCTTCGGGT
*
86925 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGAGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
86990 AGCCTTCGGGT
66 AGCCTTCGGGT
* *
87001 CATCTGTAAGCCCTTCAGTGCATGATGATTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
87066 AGCCTTCGGGT
66 AGCCTTCGGGT
* *
87077 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAA
87112 CATTTCCATC
Statistics
Matches: 699, Mismatches: 14, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
73 13 0.02
74 59 0.08
75 59 0.08
76 568 0.81
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.35
Consensus pattern (76 bp):
CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
AGCCTTCGGGT
Found at i:87274 original size:27 final size:26
Alignment explanation
Indices: 87236--87312 Score: 106
Period size: 24 Copynumber: 3.0 Consensus size: 26
87226 TTATTTAAAT
87236 TTATTATTATTATTAAA-T-TTATTA
1 TTATTATTATTATTAAATTATTATTA
87260 TTATTATTATTATTAAA-TATTATTA
1 TTATTATTATTATTAAATTATTATTA
*
87285 TTAGTATATTATTATTAAATAATTATTA
1 TTA-T-TATTATTATTAAATTATTATTA
87313 CAAGCCCAAA
Statistics
Matches: 48, Mismatches: 1, Indels: 4
0.91 0.02 0.08
Matches are distributed among these distances:
24 18 0.38
25 9 0.19
26 1 0.02
27 13 0.27
28 7 0.15
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.58
Consensus pattern (26 bp):
TTATTATTATTATTAAATTATTATTA
Found at i:87312 original size:3 final size:3
Alignment explanation
Indices: 87236--87301 Score: 73
Period size: 3 Copynumber: 22.0 Consensus size: 3
87226 TTATTTAAAT
* *
87236 TTA TTA TTA TTA TTA -AA TTTA TTA TTA TTA TTA TTA TTAA ATA TTA
1 TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TT-A TTA TTA
*
87282 TTA TTA GTA -TA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA
87302 AATAATTATT
Statistics
Matches: 54, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
2 3 0.06
3 48 0.89
4 3 0.06
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:88725 original size:16 final size:17
Alignment explanation
Indices: 88676--88733 Score: 61
Period size: 15 Copynumber: 3.6 Consensus size: 17
88666 AGTTTTAATG
*
88676 TTATTACTTTTATTTTC
1 TTATTACTTTTATTTTA
* *
88693 TT-TCA-TTTTA-ATTA
1 TTATTACTTTTATTTTA
88707 TTATTA-TTTTATTTTA
1 TTATTACTTTTATTTTA
88723 TTATTACTTTT
1 TTATTACTTTT
88734 GATATATGTT
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
14 4 0.12
15 12 0.36
16 11 0.33
17 6 0.18
ACGTcount: A:0.22, C:0.07, G:0.00, T:0.71
Consensus pattern (17 bp):
TTATTACTTTTATTTTA
Found at i:88778 original size:11 final size:11
Alignment explanation
Indices: 88703--88778 Score: 50
Period size: 11 Copynumber: 6.5 Consensus size: 11
88693 TTTCATTTTA
88703 ATTATTATTATT
1 ATTATT-TTATT
88715 -TTATTTTATT
1 ATTATTTTATT
88725 ATTACTTTTGA-T
1 ATTA-TTTT-ATT
88737 A-TATGTTTAAATT
1 ATTAT-TTT--ATT
* *
88750 ATTATCTTCATG
1 ATTAT-TTTATT
88762 ATTATTTTATT
1 ATTATTTTATT
88773 ATTATT
1 ATTATT
88779 ATTAAGATAT
Statistics
Matches: 51, Mismatches: 6, Indels: 15
0.71 0.08 0.21
Matches are distributed among these distances:
10 6 0.12
11 23 0.45
12 14 0.27
13 3 0.06
14 5 0.10
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.63
Consensus pattern (11 bp):
ATTATTTTATT
Done.