Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002460.1 Hibiscus syriacus cultivar Beakdansim tig00005036_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63360

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7742--8276
192
2.8
192
95
0
944
39
16
14
29
1.89
14095--14196
50
2.0
50
96
0
186
32
8
11
47
1.71
15419--15458
18
2.0
21
86
13
59
62
2
5
30
1.29
17083--17134
18
2.8
18
91
2
68
17
48
17
17
1.82
17096--17134
18
2.2
18
100
0
78
15
48
17
17
1.81
17336--17364
2
14.5
2
100
0
58
48
0
0
51
1.00
17397--17458
19
3.3
19
76
17
65
66
1
30
1
1.11
19154--19204
14
3.6
14
81
7
59
35
0
1
62
1.06
19153--19204
10
5.6
9
76
15
52
34
0
1
63
1.06
20269--20314
24
2.0
23
91
4
74
60
6
2
30
1.34
20298--20363
34
1.9
34
93
0
114
53
4
4
37
1.42
21206--21273
25
3.0
20
80
18
64
58
4
2
33
1.33
21614--21879
142
1.9
142
88
3
410
23
28
25
22
1.99
22680--22758
32
2.5
32
97
0
149
16
15
29
39
1.89
44320--44377
21
2.7
22
84
10
75
18
29
29
22
1.98
44314--44389
22
3.5
22
74
16
77
21
28
25
25
1.99
51478--51731
91
2.8
91
77
8
223
23
20
27
28
1.99
51757--51835
32
2.5
32
100
0
158
35
7
20
36
1.81
55573--55638
30
2.2
29
79
12
73
39
13
1
45
1.53
59438--59468
2
15.5
2
100
0
62
48
0
0
51
1.00
59541--59607
27
2.5
27
82
4
73
38
2
11
46
1.56
59443--59682
125
1.9
125
94
0
426
42
6
9
40
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59467--59668
61
3.3
61
75
9
237
41
7
11
39
1.69
61079--61122
12
3.8
12
76
11
56
50
4
6
38
1.50
61079--61129
22
2.5
20
83
6
66
49
3
5
41
1.45
62219--62263
22
2.1
22
88
12
67
44
2
0
53
1.13
62227--62330
42
2.4
43
85
6
131
51
0
0
47
1.07
62260--62336
28
2.8
27
72
5
73
55
0
0
44
0.99
63139--63180
7
5.9
7
78
15
50
16
2
0
80
0.81
63133--63180
22
2.2
21
85
10
62
16
6
0
77
0.97

Tables:   1

The End!