Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002462.1 Hibiscus syriacus cultivar Beakdansim tig00005038_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90752

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2342--2382
21
2.0
21
85
0
55
39
17
2
41
1.62
6010--6056
11
4.2
11
79
15
60
61
0
0
38
0.96
6010--6053
10
4.0
10
81
18
52
61
0
0
38
0.96
6012--6060
24
2.0
25
92
7
84
61
0
0
38
0.96
7185--7241
19
2.9
19
75
15
62
66
3
3
26
1.24
21203--21301
51
1.9
51
91
0
162
45
11
21
22
1.83
23985--24114
64
2.0
64
93
0
224
24
18
12
44
1.84
37652--37723
33
2.0
37
82
15
89
56
0
1
41
1.07
37424--37808
146
2.7
142
81
10
446
47
7
6
38
1.58
39191--39267
3
26.7
3
80
17
92
66
0
1
32
1.00
39191--39267
31
2.6
29
84
13
104
66
0
1
32
1.00
39873--40314
113
3.9
112
92
0
688
27
19
16
37
1.92
40668--40723
22
2.6
22
91
2
87
37
14
14
33
1.86
45707--45771
25
2.6
25
92
2
105
0
18
0
81
0.69
45706--45772
8
8.1
8
90
8
91
0
17
0
82
0.68
48779--48832
13
3.9
14
86
13
76
57
9
18
14
1.64
48779--48832
7
7.7
7
84
15
76
57
9
18
14
1.64
48781--48832
21
2.5
21
100
0
104
55
9
19
15
1.67
50824--50864
22
1.9
22
85
5
57
41
0
4
53
1.22
50906--50988
34
2.5
32
77
14
80
62
1
0
36
1.03
50837--51210
146
2.6
144
80
10
414
47
6
6
38
1.57
51325--51372
15
3.5
13
75
13
51
66
0
4
29
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51325--51365
19
2.1
20
86
4
57
68
0
4
26
1.10
51446--51485
15
2.7
15
88
0
62
55
0
5
40
1.22
52614--52711
3
33.3
3
75
15
89
68
2
1
28
1.07
52615--52711
23
4.3
23
77
13
103
68
2
1
28
1.08
52614--52714
20
4.9
20
79
7
114
69
1
0
27
1.06
55305--55478
36
4.9
36
92
0
287
41
14
16
27
1.87
56750--56787
14
2.7
14
84
11
51
21
10
28
39
1.86
63270--63408
36
3.9
36
90
0
215
41
15
17
25
1.88
66920--67081
64
2.5
65
75
8
161
33
20
20
25
1.97
74384--74424
21
2.0
21
90
0
64
24
19
21
34
1.97
74431--74467
18
2.1
18
100
0
74
43
16
18
21
1.88
76070--76152
23
3.6
23
86
0
121
20
30
22
26
1.98
77563--77602
20
2.2
17
86
13
53
15
35
5
45
1.68
82887--82948
31
2.1
31
84
6
83
33
22
6
37
1.80
83633--83717
16
4.9
16
68
28
50
61
1
1
36
1.12
83622--83792
53
3.2
52
78
12
152
54
0
2
42
1.17
83611--83741
26
5.1
25
76
18
110
57
1
0
40
1.13
83653--83727
16
4.4
16
68
25
55
57
1
1
40
1.16
83606--83738
12
10.8
12
67
22
62
55
1
0
42
1.14
83855--83906
26
2.0
25
82
14
61
44
7
1
46
1.43
86206--86290
26
3.3
26
93
0
143
40
18
4
36
1.72
86469--86500
17
1.9
16
93
6
55
43
12
25
18
1.85

Tables:   1

The End!