genome.fa.s2463.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002463.1 Hibiscus syriacus cultivar Beakdansim tig00005039_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  171968

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
730--778	21	2.5	20	80	16	57	28	14	28	28	1.95
802--858	22	2.8	21	81	10	64	29	19	22	28	1.98
1415--1466	21	2.4	21	84	9	61	44	1	19	34	1.62
5688--5731	21	2.0	23	86	8	65	43	2	20	34	1.64
5986--6020	18	1.9	18	88	0	52	20	17	34	28	1.95
10534--10585	25	2.1	25	92	0	86	55	3	7	32	1.46
12419--12450	15	2.0	17	88	11	50	31	15	6	46	1.71
12655--12746	29	3.2	29	92	0	148	25	25	31	18	1.98
20657--20763	3	35.7	3	88	7	164	34	1	0	63	1.05
22931--22973	19	2.3	18	84	15	52	30	2	2	65	1.18
24413--24454	15	3.0	14	83	10	50	19	19	7	54	1.66
29989--30253	83	3.2	83	93	1	451	27	13	21	36	1.92
32805--32859	22	2.5	22	84	0	74	32	14	16	36	1.89
33199--35409	113	19.7	111	89	4	3148	38	13	19	28	1.90
33162--35409	225	10.0	224	95	1	3228	38	14	18	28	1.90
35724--35818	3	31.7	3	93	0	163	34	2	0	63	1.07
35817--35861	20	2.3	19	84	3	54	62	2	0	35	1.08
37928--37994	28	2.4	28	94	0	116	32	11	31	23	1.91
42480--42546	20	3.3	20	65	8	55	40	8	11	38	1.74
42447--42649	40	5.1	40	87	3	266	38	10	18	32	1.85
44316--44349	17	2.0	17	88	0	50	61	5	2	29	1.34
45063--45151	36	2.6	33	84	7	108	16	14	7	60	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45416--45460	23	2.0	23	83	8	58	57	2	0	40	1.11
45847--45915	30	2.3	30	82	2	93	21	14	14	49	1.79
46438--46467	3	10.0	3	100	0	60	33	0	0	66	0.92
47555--47595	20	2.0	20	85	0	55	14	21	2	60	1.45
49785--50177	68	5.8	68	87	1	538	32	12	23	31	1.92
50183--50368	81	2.3	81	89	1	275	37	11	24	26	1.89
54393--54433	21	2.0	21	100	0	82	29	24	17	29	1.97
54881--55047	59	2.9	58	87	1	226	32	10	20	35	1.88
54881--55055	58	3.0	57	83	8	217	32	10	20	36	1.87
60250--60575	68	4.8	68	91	0	526	31	14	24	29	1.95
60346--60455	32	3.3	32	64	26	75	30	12	22	34	1.92
60472--60575	32	3.2	31	66	19	84	34	12	24	28	1.92
60250--60575	137	2.4	136	90	0	526	31	14	24	29	1.95
60527--60734	81	2.6	81	87	6	289	37	13	21	27	1.91
64367--64399	17	1.9	17	100	0	66	24	21	30	24	1.99
64369--64408	17	2.4	17	91	0	62	27	22	22	27	1.99
64702--64846	55	2.6	55	84	0	191	31	17	21	28	1.96
66831--66872	17	2.5	17	96	0	75	23	23	26	26	2.00
67165--67309	55	2.6	55	84	0	191	31	17	21	29	1.96
67881--67945	21	3.0	21	77	18	62	21	23	27	27	1.99
73981--74179	55	3.6	55	84	0	256	28	17	22	31	1.97
74689--74737	21	2.3	21	86	6	64	26	16	28	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78211--78249	18	2.2	18	95	0	69	33	28	12	25	1.93
82826--82859	9	3.6	10	88	11	54	29	0	17	52	1.45
83030--83061	2	16.0	2	100	0	64	50	0	0	50	1.00
83813--83865	24	2.2	24	83	9	65	30	5	22	41	1.77
86567--86600	9	3.6	10	88	11	54	29	0	17	52	1.45
87527--87579	24	2.2	24	83	9	65	30	5	22	41	1.77
87830--87913	23	3.7	23	81	12	100	19	26	23	30	1.98
87825--87913	46	1.9	46	86	4	126	19	25	22	32	1.97
88393--88425	16	2.1	16	100	0	66	33	24	12	30	1.91
89965--89995	16	2.0	15	93	6	53	64	3	0	32	1.09
93276--93309	18	1.9	18	88	5	52	26	32	26	14	1.95
98388--98430	21	2.0	22	86	13	63	48	4	11	34	1.60
102280--102319	21	1.9	21	89	0	62	25	40	25	10	1.86
136992--137023	2	16.0	2	100	0	64	50	0	0	50	1.00
139073--139128	24	2.3	24	100	0	112	37	16	17	28	1.91
140830--140868	20	1.9	21	94	5	71	46	25	15	12	1.81
140804--141663	181	4.7	182	87	1	1120	44	13	15	26	1.83
140960--142144	182	6.7	168	81	9	1013	44	12	15	27	1.82
145169--146026	199	4.3	199	86	2	1166	42	15	13	28	1.85
146650--146685	18	2.0	18	100	0	72	11	22	16	50	1.77
147453--148132	198	3.4	201	81	5	681	40	14	13	31	1.85
155741--155765	12	2.1	12	100	0	50	40	24	16	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
166665--166827	64	2.5	65	82	6	190	26	20	23	28	1.99
166685--166827	65	2.2	64	85	6	182	26	20	23	30	1.98

Tables:   1

The End!