Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002464.1 Hibiscus syriacus cultivar Beakdansim tig00005040_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66417

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1097--1144
20
2.5
20
93
3
80
27
29
10
33
1.90
2631--2675
23
2.0
23
86
0
63
48
15
11
24
1.77
13265--13390
68
1.9
66
88
3
189
30
4
16
48
1.67
13442--13477
19
1.9
19
88
5
56
27
2
5
63
1.30
15589--15632
23
1.9
23
95
0
79
43
11
6
38
1.67
15656--15707
27
1.9
27
88
0
77
40
17
1
40
1.60
18578--18625
19
2.6
18
83
3
51
52
4
6
37
1.46
18618--18672
24
2.2
24
83
9
65
50
1
0
47
1.11
18707--18801
47
2.0
47
91
0
154
42
9
4
44
1.56
18847--18893
24
2.0
24
82
0
58
55
2
2
40
1.24
19058--19114
25
2.3
24
88
5
71
29
5
3
61
1.35
21780--21819
21
1.9
21
89
0
62
32
17
17
32
1.93
28249--28298
25
2.0
25
96
0
91
30
24
16
30
1.96
34133--34179
21
2.2
22
96
3
87
46
4
0
48
1.21
35293--35336
13
3.5
13
90
6
72
18
52
15
13
1.75
35460--35494
12
2.9
12
95
0
61
28
51
11
8
1.67
35662--35719
30
1.9
30
85
0
80
25
29
24
20
1.99
35784--35828
19
2.4
19
100
0
90
26
22
24
26
2.00
46483--46533
26
1.9
26
84
4
66
11
49
11
27
1.74
46820--46910
31
2.9
30
87
9
130
50
10
15
23
1.75
47651--47676
4
6.5
4
100
0
52
50
0
0
50
1.00
50891--50962
28
2.6
28
100
0
144
34
18
11
36
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51263--51346
41
2.0
43
81
13
102
55
2
2
39
1.26
51782--51824
22
2.0
21
86
8
61
32
16
25
25
1.96
51976--52010
17
2.1
17
100
0
70
45
34
0
20
1.51
54650--54695
24
1.9
24
100
0
92
32
15
0
52
1.43
55321--55362
21
2.0
21
90
0
66
52
0
0
47
1.00
55762--55790
14
2.1
14
100
0
58
51
0
13
34
1.42
61757--61975
51
4.4
51
83
6
286
45
15
13
25
1.82
61743--61972
97
2.3
101
82
5
272
46
14
13
25
1.80
61743--61987
51
4.9
51
77
9
236
46
14
13
25
1.81
62722--62789
30
2.3
29
92
5
118
27
5
10
55
1.56
62949--62996
25
2.0
24
84
12
62
58
0
6
35
1.23
63381--63406
8
3.2
8
100
0
52
34
0
0
65
0.93
64592--64621
12
2.5
12
94
0
51
80
0
13
6
0.91
64587--64638
21
2.4
21
83
6
59
75
0
13
11
1.06
64614--64666
12
4.5
11
77
11
52
64
0
18
16
1.30
64972--65495
244
2.1
244
90
0
825
36
20
13
29
1.91

Tables:   1

The End!