Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002466.1 Hibiscus syriacus cultivar Beakdansim tig00005045_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 122623
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Found at i:4432 original size:59 final size:60
Alignment explanation
Indices: 4334--4492 Score: 143
Period size: 60 Copynumber: 2.7 Consensus size: 60
4324 CATTATGTCC
* * * *
4334 CCAAAGTATGATC-ATCATTTTAAATTGGTCCGT-AAACTTT-A-AATATTCTAATTTCATCA
1 CCAAACTATGACCTATCATTATAAATTAGTCC-TCAAACTTTGAGAAT-TTC-AATTTCATCA
** * * *
4393 TTAAATTATGA-CTATCATTCTAAATTAGTCCTCAAACTTTTGAGCATTTCAATTTCATCA
1 CCAAACTATGACCTATCATTATAAATTAGTCCTCAAAC-TTTGAGAATTTCAATTTCATCA
4453 CCAAACTATGACCT-TCATTATAAATTAGT-CTCCAAACTTT
1 CCAAACTATGACCTATCATTATAAATTAGTCCT-CAAACTTT
4493 TCAAACATTC
Statistics
Matches: 83, Mismatches: 10, Indels: 14
0.78 0.09 0.13
Matches are distributed among these distances:
58 2 0.02
59 33 0.40
60 40 0.48
61 6 0.07
62 2 0.02
ACGTcount: A:0.35, C:0.19, G:0.07, T:0.39
Consensus pattern (60 bp):
CCAAACTATGACCTATCATTATAAATTAGTCCTCAAACTTTGAGAATTTCAATTTCATCA
Found at i:4471 original size:60 final size:60
Alignment explanation
Indices: 4378--4520 Score: 159
Period size: 60 Copynumber: 2.4 Consensus size: 60
4368 AACTTTAAAT
** * * * *
4378 ATTCTAATTTCATCATTAAATTATGACTATCATTCTAAATTAGTC-CTCAAACTTTT-GAGC
1 ATTC-AATTTCATCACCAAACTATGACTATCATTATAAATTAGTCTC-CAAACTTTTCAAAC
4438 ATTTCAATTTCATCACCAAACTATGACCT-TCATTATAAATTAGTCTCCAAACTTTTCAAAC
1 A-TTCAATTTCATCACCAAACTATGA-CTATCATTATAAATTAGTCTCCAAACTTTTCAAAC
*
4499 ATTCCATTTCATC-CCAAACTAT
1 ATTCAATTTCATCACCAAACTAT
4521 ACGTATATAC
Statistics
Matches: 72, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
59 9 0.12
60 54 0.75
61 9 0.12
ACGTcount: A:0.34, C:0.23, G:0.04, T:0.38
Consensus pattern (60 bp):
ATTCAATTTCATCACCAAACTATGACTATCATTATAAATTAGTCTCCAAACTTTTCAAAC
Found at i:7380 original size:20 final size:20
Alignment explanation
Indices: 7355--7406 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
7345 CAACGCGATC
7355 CCAGAATCGCAAATCAGTTT
1 CCAGAATCGCAAATCAGTTT
7375 CCAGAATCGCAAATCAGTTT
1 CCAGAATCGCAAATCAGTTT
*
7395 CCAAAATCGCAA
1 CCAGAATCGCAA
7407 CGCGATTCTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.38, C:0.27, G:0.13, T:0.21
Consensus pattern (20 bp):
CCAGAATCGCAAATCAGTTT
Found at i:7487 original size:20 final size:20
Alignment explanation
Indices: 7462--7655 Score: 76
Period size: 20 Copynumber: 9.7 Consensus size: 20
7452 GATTTTCCAT
* *
7462 AATCGCAACGCGAATATGA-A
1 AATCGCAACGCGAACA-CATA
7482 AATCGCAACGCGAACACATA
1 AATCGCAACGCGAACACATA
* *
7502 AATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* * *
7522 AATCGCAACGTGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* ****
7542 AATCGCAACGCGTATGGGTA
1 AATCGCAACGCGAACACATA
* * *
7562 AATCGCAATGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* * *
7582 TATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
** *
7602 AATCGCAACGATAATACATAA
1 AATCGCAACGCGAACACAT-A
* *
7623 AATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
7643 AATCGCAACGCGA
1 AATCGCAACGCGA
7656 TATTTAAAGC
Statistics
Matches: 139, Mismatches: 28, Indels: 15
0.76 0.15 0.08
Matches are distributed among these distances:
19 3 0.02
20 120 0.86
21 15 0.11
22 1 0.01
ACGTcount: A:0.36, C:0.26, G:0.20, T:0.19
Consensus pattern (20 bp):
AATCGCAACGCGAACACATA
Found at i:7507 original size:40 final size:39
Alignment explanation
Indices: 7458--7655 Score: 200
Period size: 40 Copynumber: 5.0 Consensus size: 39
7448 TTGCGATTTT
* ** *
7458 CCAT-AATCGCAACGCGAATATGAAAATCGCAACGCGAA
1 CCATAAATCGCAACGCGTATCCGTAAATCGCAACGCGAA
* *
7496 CACATAAATCGCAACGCGTATCCGTAAATCGCAACGTGTAT
1 C-CATAAATCGCAACGCGTATCCGTAAATCGCAACGCG-AA
* ** * *
7537 CCGTAAATCGCAACGCGTATGGGTAAATCGCAATGCGTAT
1 CCATAAATCGCAACGCGTATCCGTAAATCGCAACGCG-AA
* * **
7577 CCGTATATCGCAACGCGTATCCGTAAATCGCAACGATAA
1 CCATAAATCGCAACGCGTATCCGTAAATCGCAACGCGAA
*
7616 TACATAAAATCGCAACGCGTATCCGTAAATCGCAACGCGA
1 -CCAT-AAATCGCAACGCGTATCCGTAAATCGCAACGCGA
7656 TATTTAAAGC
Statistics
Matches: 132, Mismatches: 23, Indels: 7
0.81 0.14 0.04
Matches are distributed among these distances:
38 1 0.01
39 4 0.03
40 94 0.71
41 33 0.25
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.19
Consensus pattern (39 bp):
CCATAAATCGCAACGCGTATCCGTAAATCGCAACGCGAA
Found at i:7545 original size:60 final size:60
Alignment explanation
Indices: 7462--7654 Score: 251
Period size: 60 Copynumber: 3.2 Consensus size: 60
7452 GATTTTCCAT
* ** * *
7462 AATCGCAACGCGAATATGAAAATCGCAACGCGAACACATAAATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGTA
* * *** *
7522 AATCGCAACGTGTATCCGTAAATCGCAACGCGTATGGGTAAATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGTA
* **
7582 TATCGCAACGCGTATCCGTAAATCGCAACGATAATACATAAAATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAATACAT-AAATCGCAACGCGTATCCGTA
7643 AATCGCAACGCG
1 AATCGCAACGCG
7655 ATATTTAAAG
Statistics
Matches: 111, Mismatches: 21, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
60 80 0.72
61 31 0.28
ACGTcount: A:0.35, C:0.26, G:0.20, T:0.19
Consensus pattern (60 bp):
AATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGTA
Found at i:8075 original size:33 final size:33
Alignment explanation
Indices: 8036--8106 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
8026 TTCACTTAGA
*
8036 TTTCATTTCGCGTTACGATTCTGTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
* *
8069 TTTCATTTCGCGTTGCTATTCTCTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
8102 TTTCA
1 TTTCA
8107 AGTTAGTATT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.11, C:0.23, G:0.18, T:0.48
Consensus pattern (33 bp):
TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
Found at i:8261 original size:19 final size:18
Alignment explanation
Indices: 8237--8349 Score: 79
Period size: 14 Copynumber: 6.8 Consensus size: 18
8227 TCGCAACGAA
8237 TTGCGATTTTCATTTCGCG
1 TTGCGATTTTCA-TTCGCG
*
8256 TTGCGA--TTC--TCTCG
1 TTGCGATTTTCATTCGCG
8270 TTGCGATTTTCATTTCGCG
1 TTGCGATTTTCA-TTCGCG
*
8289 TTGCGA--TTC--TCTCG
1 TTGCGATTTTCATTCGCG
*
8303 TTGCGATTGTCATCTCGCG
1 TTGCGATTTTCAT-TCGCG
*
8322 TTGCGA--TTC--TCTCG
1 TTGCGATTTTCATTCGCG
8336 TTGCGATTTTCATT
1 TTGCGATTTTCATT
8350 TCAACCAAAA
Statistics
Matches: 73, Mismatches: 7, Indels: 29
0.67 0.06 0.27
Matches are distributed among these distances:
14 30 0.41
16 8 0.11
17 8 0.11
18 1 0.01
19 26 0.36
ACGTcount: A:0.10, C:0.24, G:0.21, T:0.45
Consensus pattern (18 bp):
TTGCGATTTTCATTCGCG
Found at i:8273 original size:14 final size:14
Alignment explanation
Indices: 8254--8343 Score: 81
Period size: 14 Copynumber: 5.7 Consensus size: 14
8244 TTTCATTTCG
8254 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
8268 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
8287 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
8301 CGTTGCGATTGTCATCT
1 CGTTGCGA-T-TC-TCT
8318 CGCGTTGCGATTCTCT
1 --CGTTGCGATTCTCT
8334 CGTTGCGATT
1 CGTTGCGATT
8344 TTCATTTCAA
Statistics
Matches: 64, Mismatches: 2, Indels: 20
0.74 0.02 0.23
Matches are distributed among these distances:
14 28 0.44
15 1 0.02
16 8 0.12
17 8 0.12
18 1 0.02
19 18 0.28
ACGTcount: A:0.09, C:0.26, G:0.23, T:0.42
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:8279 original size:33 final size:33
Alignment explanation
Indices: 8237--8351 Score: 212
Period size: 33 Copynumber: 3.5 Consensus size: 33
8227 TCGCAACGAA
8237 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
8270 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
* *
8303 TTGCGATTGTCATCTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
8336 TTGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
8352 AACCAAAAGA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 78 1.00
ACGTcount: A:0.10, C:0.24, G:0.21, T:0.45
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
Found at i:10336 original size:93 final size:93
Alignment explanation
Indices: 10042--10696 Score: 1257
Period size: 93 Copynumber: 7.1 Consensus size: 93
10032 TAGATTGCTT
*
10042 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
10107 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
*
10135 AGTAAATTTGTTTGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTG-AA-A-TA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
10197 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
10225 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
10290 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
10318 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
10383 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
10411 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATA-TA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
10475 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
10503 AGT-AATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
10567 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
10595 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
10660 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
10688 AGTAAATTT
1 AGTAAATTT
10697 ATCCATTCAA
Statistics
Matches: 554, Mismatches: 3, Indels: 10
0.98 0.01 0.02
Matches are distributed among these distances:
90 86 0.16
91 61 0.11
92 69 0.12
93 338 0.61
ACGTcount: A:0.22, C:0.13, G:0.19, T:0.47
Consensus pattern (93 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGAA
Found at i:10597 original size:184 final size:186
Alignment explanation
Indices: 10042--10696 Score: 1257
Period size: 184 Copynumber: 3.5 Consensus size: 186
10032 TAGATTGCTT
*
10042 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
*
10107 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTTGGTTGCTGCCAATTCTGCTAAACT
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
10172 GTGTATTCTTTAACACTGTG-AA-A-TATTTGTCTTTGTTTTGTCTTTTGGTTGAA
131 GTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAA
10225 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
10290 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
10355 GTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAA
131 GTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAA
10411 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATA-TA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
10475 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGT-AATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
10539 GTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAA
131 GTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAA
10595 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
10660 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTT
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTT
10697 ATCCATTCAA
Statistics
Matches: 465, Mismatches: 2, Indels: 7
0.98 0.00 0.01
Matches are distributed among these distances:
183 148 0.32
184 153 0.33
185 67 0.14
186 97 0.21
ACGTcount: A:0.22, C:0.13, G:0.19, T:0.47
Consensus pattern (186 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
GTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAA
Found at i:10650 original size:277 final size:276
Alignment explanation
Indices: 10042--10696 Score: 1267
Period size: 277 Copynumber: 2.4 Consensus size: 276
10032 TAGATTGCTT
*
10042 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
*
10107 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTTGGTTGCTGCCAATTCTGCTAAACT
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
10172 GTGTATTCTTTAACACTGTGAAATATTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTT
131 GTGTATTCTTTAACACTGTGAAATATTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTT
10237 CGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTT
196 CGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTT
10302 TTGTCTTTTGGTTGAA
261 TTGTCTTTTGGTTGAA
10318 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
10383 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
10448 GTGTATTCTTTAACACTGTGAAATATATTTGTCTTTGTTTTGTCTTTTGGTTGAAAGT-AATTTG
131 GTGTATTCTTTAACACTGTG-AA-ATATTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTG
10512 TTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTG
194 TTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTG
10577 TTTTGTCTTTTGGTTGAA
259 TTTTGTCTTTTGGTTGAA
10595 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
10660 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTT
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTT
10697 ATCCATTCAA
Statistics
Matches: 375, Mismatches: 2, Indels: 3
0.99 0.01 0.01
Matches are distributed among these distances:
276 148 0.39
277 193 0.51
278 34 0.09
ACGTcount: A:0.22, C:0.13, G:0.19, T:0.47
Consensus pattern (276 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
GTGTATTCTTTAACACTGTGAAATATTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTT
CGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTT
TTGTCTTTTGGTTGAA
Found at i:10780 original size:19 final size:19
Alignment explanation
Indices: 10740--10868 Score: 125
Period size: 19 Copynumber: 7.3 Consensus size: 19
10730 TAGTTTACTT
* *
10740 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAAC-CAAAA
10760 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
**
10779 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAACCAAAA
*
10798 TCGCAA--CG--A-CAGAA
1 TCGCAACGCGAAACCAAAA
10812 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
*
10831 TCGCAA--CG--A-CAAGA
1 TCGCAACGCGAAACCAAAA
10845 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
10864 TCGCA
1 TCGCA
10869 TTGCGATTTT
Statistics
Matches: 90, Mismatches: 9, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 19 0.21
15 2 0.02
16 4 0.04
17 4 0.04
18 2 0.02
19 46 0.51
20 13 0.14
ACGTcount: A:0.46, C:0.29, G:0.17, T:0.09
Consensus pattern (19 bp):
TCGCAACGCGAAACCAAAA
Found at i:10819 original size:33 final size:32
Alignment explanation
Indices: 10776--10868 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 32
10766 CGCGAAACCA
**
10776 AAATCGCAACGCGAAATGAAAATCGCAACGAC
1 AAATCGCAACGCGAAACCAAAATCGCAACGAC
10808 AGAATCGCAACGCGAAACCAAAATCGCAACGAC
1 A-AATCGCAACGCGAAACCAAAATCGCAACGAC
10841 AAGATCGCAACGCGAAACCAAAATCGCA
1 AA-ATCGCAACGCGAAACCAAAATCGCA
10869 TTGCGATTTT
Statistics
Matches: 57, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
32 2 0.04
33 55 0.96
ACGTcount: A:0.46, C:0.28, G:0.18, T:0.08
Consensus pattern (32 bp):
AAATCGCAACGCGAAACCAAAATCGCAACGAC
Found at i:10866 original size:52 final size:52
Alignment explanation
Indices: 10740--10868 Score: 140
Period size: 52 Copynumber: 2.5 Consensus size: 52
10730 TAGTTTACTT
**
10740 TCGCAACACGAAACTTAAAATCGCAACGCGAAACCAAAATCGCAACGCGAAA
1 TCGCAACACGAAACACAAAATCGCAACGCGAAACCAAAATCGCAACGCGAAA
* * *
10792 T-G-AAAATCGCAACGACAGAATCGCAACGCGAAACCAAAATCGCAACGAC-AAGA
1 TCGCAACA-CGAAAC-ACAAAATCGCAACGCGAAACCAAAATCGCAACG-CGAA-A
*
10845 TCGCAACGCGAAAC-CAAAATCGCA
1 TCGCAACACGAAACACAAAATCGCA
10869 TTGCGATTTT
Statistics
Matches: 62, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
50 3 0.05
51 6 0.10
52 42 0.68
53 3 0.05
54 6 0.10
55 2 0.03
ACGTcount: A:0.46, C:0.29, G:0.17, T:0.09
Consensus pattern (52 bp):
TCGCAACACGAAACACAAAATCGCAACGCGAAACCAAAATCGCAACGCGAAA
Found at i:10886 original size:19 final size:19
Alignment explanation
Indices: 10864--10998 Score: 128
Period size: 19 Copynumber: 7.6 Consensus size: 19
10854 GAAACCAAAA
*
10864 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
10883 TCGCGTTGCGA--TTC-TT
1 TCGCGTTGCGATTTTCATT
10899 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
* *
10916 TCGCATTGCGA--TTC-TG
1 TCGCGTTGCGATTTTCATT
10932 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
**
10949 TCGCGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTTCATT
*
10968 TCGCGTTGCGATTTTAAGTT
1 TCGCGTTGCGATTTTCA-TT
*
10988 TCGTGTTGCGA
1 TCGCGTTGCGA
10999 AAGTAAACTA
Statistics
Matches: 95, Mismatches: 10, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 15 0.16
16 11 0.12
17 11 0.12
19 46 0.48
20 12 0.13
ACGTcount: A:0.11, C:0.19, G:0.24, T:0.46
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:10905 original size:14 final size:14
Alignment explanation
Indices: 10886--10942 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
10876 TTTCATTTCG
10886 CGTTGCGATTCTTT
1 CGTTGCGATTCTTT
10900 CGTTGCGATTTTCATTT
1 CGTTGCGA--TTC-TTT
*
10917 CGCATTGCGATTCTGT
1 CG--TTGCGATTCTTT
10933 CGTTGCGATT
1 CGTTGCGATT
10943 TTCATTTCGC
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 16 0.43
16 7 0.19
17 8 0.22
19 6 0.16
ACGTcount: A:0.11, C:0.21, G:0.23, T:0.46
Consensus pattern (14 bp):
CGTTGCGATTCTTT
Found at i:10911 original size:33 final size:33
Alignment explanation
Indices: 10869--10961 Score: 168
Period size: 33 Copynumber: 2.8 Consensus size: 33
10859 CAAAATCGCA
*
10869 TTGCGATTTTCATTTCGCGTTGCGATTCTTTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
*
10902 TTGCGATTTTCATTTCGCATTGCGATTCTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
10935 TTGCGATTTTCATTTCGCGTTGCGATT
1 TTGCGATTTTCATTTCGCGTTGCGATT
10962 TTGGTTTCGC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.11, C:0.20, G:0.22, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
Found at i:12939 original size:14 final size:14
Alignment explanation
Indices: 12920--12955 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
12910 ATTGTTTAAT
12920 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
*
12934 TGATTTGTAAAAGT
1 TGATTTGTAAAAGA
12948 TGATTTGT
1 TGATTTGT
12956 GTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:13077 original size:19 final size:19
Alignment explanation
Indices: 13061--13162 Score: 151
Period size: 19 Copynumber: 5.6 Consensus size: 19
13051 AAAAATGACT
13061 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
13080 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
13099 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
13113 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
13132 ATCGCAATGCGGAAATGAAA
1 ATCGCAATGC-GAAATGAAA
13152 ATCGCAATGCG
1 ATCGCAATGCG
13163 TTTATAATTT
Statistics
Matches: 75, Mismatches: 2, Indels: 12
0.84 0.02 0.13
Matches are distributed among these distances:
14 10 0.13
15 1 0.01
16 2 0.03
17 2 0.03
18 1 0.01
19 40 0.53
20 19 0.25
ACGTcount: A:0.44, C:0.18, G:0.24, T:0.15
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:13181 original size:19 final size:19
Alignment explanation
Indices: 13153--13395 Score: 177
Period size: 19 Copynumber: 13.8 Consensus size: 19
13143 GAAATGAAAA
*
13153 TCGCAATGCG-TTTATAATT
1 TCGCATTGCGATTT-TAATT
*
13172 TCGCATTGCGA--TT-ATC
1 TCGCATTGCGATTTTAATT
*
13188 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTAATT
*
13205 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTAATT
13224 TCGCATTGCGATTTTAATT
1 TCGCATTGCGATTTTAATT
* *
13243 TCGCATTGCGA--TT-CTG
1 TCGCATTGCGATTTTAATT
*
13259 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTAATT
* *
13276 TCGCATTGCGTTTTTCATT
1 TCGCATTGCGATTTTAATT
* *
13295 TCGCATTGCGA--TT-CTC
1 TCGCATTGCGATTTTAATT
*
13311 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTAATT
*
13328 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTAATT
* *
13347 TCGCATTGCGA--TT-CTC
1 TCGCATTGCGATTTTAATT
*
13363 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTAATT
13380 TCCGCATTGCGATTTT
1 T-CGCATTGCGATTTT
13396 CATGTTGAGA
Statistics
Matches: 184, Mismatches: 18, Indels: 43
0.75 0.07 0.18
Matches are distributed among these distances:
14 24 0.13
16 25 0.14
17 22 0.12
18 3 0.02
19 100 0.54
20 10 0.05
ACGTcount: A:0.15, C:0.21, G:0.18, T:0.46
Consensus pattern (19 bp):
TCGCATTGCGATTTTAATT
Found at i:13211 original size:33 final size:33
Alignment explanation
Indices: 13169--13426 Score: 218
Period size: 33 Copynumber: 7.5 Consensus size: 33
13159 TGCGTTTATA
13169 ATTTCGCATTGCGATTATCTCGTTGCGATTTTC
1 ATTTCGCATTGCGATTATCTCGTTGCGATTTTC
* *
13202 ATTTCGCATTGCGATTTTCATTTCGCATTGCGATTTTA
1 ATTTCGCATTGCGA--TT-ATCTCG--TTGCGATTTTC
* *
13240 ATTTCGCATTGCGATTCTGTCGTTGCGATTTTC
1 ATTTCGCATTGCGATTATCTCGTTGCGATTTTC
* *
13273 ATTTCGCATTGCGTTTTTCATTTCGCATTGCGATTCTCTC
1 ATTTCGCATTGCG--ATT-ATCTCG--TTGCGATT-T-TC
* * * * *
13313 GTTGCG-ATTTTC-ATT-TCGCATTGCGATTTTC
1 ATTTCGCA-TTGCGATTATCTCGTTGCGATTTTC
*
13344 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTC
1 ATTTCGCATTGCGATTATCTCGTTGCGATTTTC
* *
13377 ATTTCCGCATTGCGATTTTCAT-GTTGAGATTTTC
1 ATTT-CGCATTGCGATTATC-TCGTTGCGATTTTC
*
13411 ATTTCGCGTTGCGATT
1 ATTTCGCATTGCGATT
13427 GTATTTTCCG
Statistics
Matches: 184, Mismatches: 23, Indels: 36
0.76 0.09 0.15
Matches are distributed among these distances:
31 9 0.05
32 5 0.03
33 74 0.40
34 29 0.16
35 11 0.06
36 11 0.06
37 2 0.01
38 32 0.17
39 2 0.01
40 9 0.05
ACGTcount: A:0.14, C:0.21, G:0.18, T:0.47
Consensus pattern (33 bp):
ATTTCGCATTGCGATTATCTCGTTGCGATTTTC
Found at i:13231 original size:52 final size:50
Alignment explanation
Indices: 13169--13426 Score: 202
Period size: 52 Copynumber: 4.9 Consensus size: 50
13159 TGCGTTTATA
*
13169 ATTTCGCATTGCGATTATCTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
1 ATTTCGCATTGCGATT-TCTCGTTGCGA-TTTCATTTCGCGTTGCGATTTTC
** * *
13221 ATTTCGCATTGCGATTT-TAATTTCGCATTGCGA-TTCTGTCGTTGCGATTTTC
1 ATTTCGCATTGCGATTTCTCGTTGCG-ATTTC-ATTTC-G-CGTTGCGATTTTC
* * * * *
13273 ATTTCGCATTGCG-TTTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTC
1 ATTTCGCATTGCGATTTCTCGTTGCG-ATTTC-ATT-TCGCGTTGCGATTTTC
* * * *
13325 ATTTCGCATTGCGATTT-TCATTTCGCATTGCGATTCTCTCGTTGCGATTTTC
1 ATTTCGCATTGCGATTTCTCGTTGCG-ATTTC-ATT-TCGCGTTGCGATTTTC
*
13377 ATTTCCGCATTGCGATTT-TCATGTTGAGATTTTCATTTCGCGTTGCGATT
1 ATTT-CGCATTGCGATTTCTC--GTTGCGA-TTTCATTTCGCGTTGCGATT
13427 GTATTTTCCG
Statistics
Matches: 182, Mismatches: 12, Indels: 23
0.84 0.06 0.11
Matches are distributed among these distances:
50 11 0.06
51 7 0.04
52 121 0.66
53 31 0.17
54 6 0.03
55 6 0.03
ACGTcount: A:0.14, C:0.21, G:0.18, T:0.47
Consensus pattern (50 bp):
ATTTCGCATTGCGATTTCTCGTTGCGATTTCATTTCGCGTTGCGATTTTC
Found at i:13247 original size:71 final size:71
Alignment explanation
Indices: 13153--13426 Score: 282
Period size: 71 Copynumber: 3.9 Consensus size: 71
13143 GAAATGAAAA
*
13153 TCGCAATGCG-TTTATAATTTCGCATTGCGATTATCTCGTTGCGATTTTCATTTCGCATTGCGAT
1 TCGCATTGCGATTTATAATTTCGCATTGCGATT-TCTCGTTGCGATTTTCATTTCGCATTGCGAT
13217 TTTCATT
65 TTTCATT
* *
13224 TCGCATTGCGATTT-TAATTTCGCATTGCGATTCTGTCGTTGCGATTTTCATTTCGCATTGCGTT
1 TCGCATTGCGATTTATAATTTCGCATTGCGATT-TCTCGTTGCGATTTTCATTTCGCATTGCGAT
13288 TTTCATT
65 TTTCATT
* ** * * * *
13295 TCGCATTGCGATTCTCTCGTTGCG-ATTTTC-ATTTCGCATTGCGATTTTCATTTCGCATTGCGA
1 TCGCATTGCGATT-TATAATTTCGCA-TTGCGATTTCTCGTTGCGATTTTCATTTCGCATTGCGA
*
13358 --TTC-TC
64 TTTTCATT
* * *
13363 TCG--TTGCGATTT-TCATTTCCGCATTGCGATTT-TCATGTTGAGATTTTCATTTCGCGTTGCG
1 TCGCATTGCGATTTATAATTT-CGCATTGCGATTTCTC--GTTGCGATTTTCATTTCGCATTGCG
13424 ATT
63 ATT
13427 GTATTTTCCG
Statistics
Matches: 172, Mismatches: 20, Indels: 24
0.80 0.09 0.11
Matches are distributed among these distances:
64 4 0.02
65 7 0.04
66 13 0.08
67 23 0.13
68 4 0.02
69 3 0.02
71 102 0.59
72 8 0.05
73 8 0.05
ACGTcount: A:0.15, C:0.21, G:0.18, T:0.46
Consensus pattern (71 bp):
TCGCATTGCGATTTATAATTTCGCATTGCGATTTCTCGTTGCGATTTTCATTTCGCATTGCGATT
TTCATT
Found at i:13318 original size:104 final size:105
Alignment explanation
Indices: 13210--13398 Score: 344
Period size: 104 Copynumber: 1.8 Consensus size: 105
13200 TCATTTCGCA
*
13210 TTGCGATTTTCATTTCGCATTGCGATTTTAATTTCGCATTGCGATTCTGTCGTTGCGATTTTCAT
1 TTGCGATTTTCATTTCGCATTGCGATTTTAATTTCGCATTGCGATTCTCTCGTTGCGATTTTCAT
*
13275 TT-CGCATTGCGTTTTTCATTTCGCATTGCGATTCTCTCG
66 TTCCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCG
*
13314 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCAT
1 TTGCGATTTTCATTTCGCATTGCGATTTTAATTTCGCATTGCGATTCTCTCGTTGCGATTTTCAT
13379 TTCCGCATTGCGATTTTCAT
66 TTCCGCATTGCGATTTTCAT
13399 GTTGAGATTT
Statistics
Matches: 81, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
104 65 0.80
105 16 0.20
ACGTcount: A:0.14, C:0.22, G:0.17, T:0.47
Consensus pattern (105 bp):
TTGCGATTTTCATTTCGCATTGCGATTTTAATTTCGCATTGCGATTCTCTCGTTGCGATTTTCAT
TTCCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCG
Found at i:15941 original size:24 final size:24
Alignment explanation
Indices: 15907--15953 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
15897 CTGAAACATC
15907 ATCAAAATCCGTG-TATTGACCAAT
1 ATCAAAATCCG-GATATTGACCAAT
*
15931 ATCAAAGTCCGGATATTGACCAA
1 ATCAAAATCCGGATATTGACCAA
15954 GACCAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (24 bp):
ATCAAAATCCGGATATTGACCAAT
Found at i:16663 original size:20 final size:20
Alignment explanation
Indices: 16635--17003 Score: 458
Period size: 20 Copynumber: 18.4 Consensus size: 20
16625 AAATTTCAGT
* * * *
16635 GTTGTGATTTACAGATTCTC
1 GTTGCGATTTACGGATACGC
*
16655 GTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGA-TACGC
* * *
16675 GTTGCGATTTACAGATTCTC
1 GTTGCGATTTACGGATACGC
*
16695 GTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGA-TACGC
16715 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
16735 GTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGA-TACGC
16755 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
16775 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
16795 ATTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
16815 GTTGCGATTTACGGATACAC
1 GTTGCGATTTACGGATACGC
*
16835 GTTGCGGTTTACGGATACGC
1 GTTGCGATTTACGGATACGC
16855 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
16875 GTTGCGATATACGGATACGC
1 GTTGCGATTTACGGATACGC
* **
16895 ATTGCGATTTACCCATACGC
1 GTTGCGATTTACGGATACGC
*
16915 GTTGCGATTTACGGATACAC
1 GTTGCGATTTACGGATACGC
16935 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
* *
16955 GTTGCGATTTATGTG-TTCGC
1 GTTGCGATTTACG-GATACGC
* ** *
16975 GTTGCGATTTTCATATTCGC
1 GTTGCGATTTACGGATACGC
16995 GTTGCGATT
1 GTTGCGATT
17004 ATTGAAAATC
Statistics
Matches: 309, Mismatches: 32, Indels: 16
0.87 0.09 0.04
Matches are distributed among these distances:
19 5 0.02
20 299 0.97
21 5 0.02
ACGTcount: A:0.20, C:0.19, G:0.26, T:0.35
Consensus pattern (20 bp):
GTTGCGATTTACGGATACGC
Found at i:17064 original size:21 final size:20
Alignment explanation
Indices: 16971--17064 Score: 64
Period size: 21 Copynumber: 4.5 Consensus size: 20
16961 ATTTATGTGT
* *
16971 TCGCGTTGCGATTTTCATAT
1 TCGCGTTGCGATTTTCAAAA
*
16991 TCGCGTTGCGATTATTGAAAA
1 TCGCGTTGCGATT-TTCAAAA
** **
17012 TCGCAATGCGAATTTGT-ACTA
1 TCGCGTTGCG-ATTT-TCAAAA
* *
17033 TCGCATCGCGATTTTCAAGAA
1 TCGCGTTGCGATTTTCAA-AA
17054 TCGCGTTGCGA
1 TCGCGTTGCGA
17065 ATTTGGAAAC
Statistics
Matches: 56, Mismatches: 13, Indels: 9
0.72 0.17 0.12
Matches are distributed among these distances:
19 1 0.02
20 18 0.32
21 33 0.59
22 4 0.07
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.34
Consensus pattern (20 bp):
TCGCGTTGCGATTTTCAAAA
Found at i:22449 original size:19 final size:19
Alignment explanation
Indices: 22427--22471 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
22417 AATCATACTA
*
22427 ATTTTTTGTAATTTTTCTG
1 ATTTTTTATAATTTTTCTG
*
22446 ATTTTTTATATTTTTTCTG
1 ATTTTTTATAATTTTTCTG
22465 ATTTTTT
1 ATTTTTT
22472 TTAAATTTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.16, C:0.04, G:0.07, T:0.73
Consensus pattern (19 bp):
ATTTTTTATAATTTTTCTG
Found at i:28350 original size:23 final size:22
Alignment explanation
Indices: 28324--28378 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
28314 TAAATTACAT
*
28324 TTATATTTTTAACTAATTTATAA
1 TTATATGTTT-ACTAATTTATAA
*
28347 TTATATGTTTAGTAATTTATAA
1 TTATATGTTTACTAATTTATAA
28369 TT-TAATGTTT
1 TTAT-ATGTTT
28379 TGTAAATTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 1 0.03
22 19 0.66
23 9 0.31
ACGTcount: A:0.35, C:0.02, G:0.05, T:0.58
Consensus pattern (22 bp):
TTATATGTTTACTAATTTATAA
Found at i:28362 original size:22 final size:22
Alignment explanation
Indices: 28337--28388 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
28327 TATTTTTAAC
28337 TAATTTATAA-TTATATGTTTAG
1 TAATTTATAATTTA-ATGTTTAG
*
28359 TAATTTATAATTTAATGTTTTG
1 TAATTTATAATTTAATGTTTAG
*
28381 TAAATTAT
1 TAATTTAT
28389 TTTAACAGTG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
22 24 0.89
23 3 0.11
ACGTcount: A:0.37, C:0.00, G:0.08, T:0.56
Consensus pattern (22 bp):
TAATTTATAATTTAATGTTTAG
Found at i:28601 original size:11 final size:11
Alignment explanation
Indices: 28585--28609 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
28575 AATTGAATAT
28585 AAGAGCTGTTA
1 AAGAGCTGTTA
28596 AAGAGCTGTTA
1 AAGAGCTGTTA
28607 AAG
1 AAG
28610 GTGAAGTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.08, G:0.28, T:0.24
Consensus pattern (11 bp):
AAGAGCTGTTA
Found at i:43146 original size:26 final size:26
Alignment explanation
Indices: 43110--43165 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
43100 CTGGGAAATG
43110 CTCCATCCCACTTTCGCTTTTCAGAT
1 CTCCATCCCACTTTCGCTTTTCAGAT
*
43136 CTCCATTCCACTTTCGCTTTTCAGAT
1 CTCCATCCCACTTTCGCTTTTCAGAT
43162 CTCC
1 CTCC
43166 TTTGGTAACA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.14, C:0.39, G:0.07, T:0.39
Consensus pattern (26 bp):
CTCCATCCCACTTTCGCTTTTCAGAT
Found at i:47093 original size:14 final size:14
Alignment explanation
Indices: 47076--47104 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
47066 GAGATTTCTA
47076 TGTAGGGAATTATT
1 TGTAGGGAATTATT
47090 TGTAGGGAATTATT
1 TGTAGGGAATTATT
47104 T
1 T
47105 ACAGGGATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.28, T:0.45
Consensus pattern (14 bp):
TGTAGGGAATTATT
Found at i:47543 original size:14 final size:14
Alignment explanation
Indices: 47524--47552 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
47514 AAGATTTCTA
47524 TGTAGGGAATTATT
1 TGTAGGGAATTATT
47538 TGTAGGGAATTATT
1 TGTAGGGAATTATT
47552 T
1 T
47553 ACAGGGATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.28, T:0.45
Consensus pattern (14 bp):
TGTAGGGAATTATT
Found at i:47794 original size:448 final size:447
Alignment explanation
Indices: 47067--47967 Score: 1730
Period size: 448 Copynumber: 2.0 Consensus size: 447
47057 CTATATGCAG
47067 AGATTTCTATGTAGGGAATTATTTGTAGGGAATTATTTACAGGGATTACTCCCCATTACAGACGC
1 AGATTTCTATGTAGGGAATTATTTGTAGGGAATTATTTACAGGGATTACTCCCCATTACAGACGC
47132 ACATATCAAGACTGCATATGAAGACTATTCATCTATGTATTTATTTATTTATTTATACACGCATT
66 ACATATCAAGACTGCATATGAAGACTATTCATCTATGTATTTATTTATTTATTTATACACGCATT
47197 TGCATCTTATCTTTATTTTTAATTTTCTTACTGCCGGAGGTCTTCCACGGAAGCTGCTCTCAACC
131 TGCATCTTATCTTTATTTTTAATTTTCTTACTGCCGGAGGTCTTCCACGGAAGCTGCTCTCAACC
*
47262 TGGCGTTGGGGTCAGCCTACTACCCTACCTCCCCCTTACCTCATTGTATATGGGAATAAGGGTTT
196 TGGCGTTGGGGTCAGCATACTACCCTACCTCCCCCTTACCTCATTGTATATGGGAATAAGGGTTT
*
47327 TGTTGTTGTTGTTCGGGTCGGGTCAGATTCGAGTTTAGGGTGAGCAATACATGACGTAAAAAAAA
261 TGTTGTTGTTGTTCGGGTCGGGTCAGATTCGAGTTTAGGGTGAACAATACATGACGT-AAAAAAA
47392 TAATTTTACATTATAAATTTATGAATAATTACAATAATACCATTTTATATATTATTTTTTCAATT
325 TAATTTTACATTATAAATTTATGAATAATTACAATAATACCATTTTATATATTATTTTTTCAATT
47457 AAATCATTTTTTAATTGAATAAAAATATTTTTTTATTATTTCAGATTGTATCGGGTTA
390 AAATCATTTTTTAATTGAATAAAAATATTTTTTTATTATTTCAGATTGTATCGGGTTA
47515 AGATTTCTATGTAGGGAATTATTTGTAGGGAATTATTTACAGGGATTACTCCCCATTACAGACGC
1 AGATTTCTATGTAGGGAATTATTTGTAGGGAATTATTTACAGGGATTACTCCCCATTACAGACGC
* *
47580 ACATATCAAGACTGCATATGAAGATTGTTCATCTATGTATTTATTTATTTATTTATACACGCATT
66 ACATATCAAGACTGCATATGAAGACTATTCATCTATGTATTTATTTATTTATTTATACACGCATT
47645 TGCATCTTATCTTTATTTTTAATTTTCTTACTGCCGGAGGTCTTCCACGGAAGCTGCTCTCAACC
131 TGCATCTTATCTTTATTTTTAATTTTCTTACTGCCGGAGGTCTTCCACGGAAGCTGCTCTCAACC
* *
47710 TGGCGTTGGGGTCAGCATACTACCCTACCTCCCCCTTATCTCATTGTATATGGGAATCAGGGTTT
196 TGGCGTTGGGGTCAGCATACTACCCTACCTCCCCCTTACCTCATTGTATATGGGAATAAGGGTTT
*
47775 TGTTGTTGTTGTTCGGGTCGGGTCAGATTCGAGTTTAGGGTGAACAATACTTGACGTAAAAAAAT
261 TGTTGTTGTTGTTCGGGTCGGGTCAGATTCGAGTTTAGGGTGAACAATACATGACGTAAAAAAAT
47840 AATTTTACATTATAAATTTATGAATAATTACAATAATACCATTTTATATATTATTTTTTCAATTA
326 AATTTTACATTATAAATTTATGAATAATTACAATAATACCATTTTATATATTATTTTTTCAATTA
47905 AATCATTTTTTAATTGAATAAAAATATTTTTTTATTATTTCAGATTGTATCGGGTTA
391 AATCATTTTTTAATTGAATAAAAATATTTTTTTATTATTTCAGATTGTATCGGGTTA
47962 AGATTT
1 AGATTT
47968 TATTTCAAAA
Statistics
Matches: 446, Mismatches: 7, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
447 136 0.30
448 310 0.70
ACGTcount: A:0.29, C:0.15, G:0.16, T:0.40
Consensus pattern (447 bp):
AGATTTCTATGTAGGGAATTATTTGTAGGGAATTATTTACAGGGATTACTCCCCATTACAGACGC
ACATATCAAGACTGCATATGAAGACTATTCATCTATGTATTTATTTATTTATTTATACACGCATT
TGCATCTTATCTTTATTTTTAATTTTCTTACTGCCGGAGGTCTTCCACGGAAGCTGCTCTCAACC
TGGCGTTGGGGTCAGCATACTACCCTACCTCCCCCTTACCTCATTGTATATGGGAATAAGGGTTT
TGTTGTTGTTGTTCGGGTCGGGTCAGATTCGAGTTTAGGGTGAACAATACATGACGTAAAAAAAT
AATTTTACATTATAAATTTATGAATAATTACAATAATACCATTTTATATATTATTTTTTCAATTA
AATCATTTTTTAATTGAATAAAAATATTTTTTTATTATTTCAGATTGTATCGGGTTA
Found at i:49643 original size:183 final size:183
Alignment explanation
Indices: 49408--49793 Score: 627
Period size: 183 Copynumber: 2.1 Consensus size: 183
49398 ATTAAATTTT
*
49408 AAATATTAAATATATTATATATAACATATGAGCTCAACCCAAATCATTTAAAACCCAATTAATAA
1 AAATATTAAATATATTATATATAACATATGAGCTCAACCCAAACCATTTAAAACCCAATTAATAA
* *
49473 TTTAAGATCCAATAACTTTTAAACTTAAATCAATATTAATTAATTAAAAAA-TTATATAAATTTT
66 TTTAAGATCCAATAACTTTTAAACTTAAATCAATACTAATTAATTAAAAAATTTATATAAAATTT
* *
49537 TTATTTTATAATTATATATTATTTAAATTATTTGTAAACTGTTTTTT-AATTAAA
131 TTATTTTATAATTATATATTATTTAAATTAATTATAAACT-TTTTTTGAATT-AA
* *
49591 AAATATTAAATATATTATATATAACATATGGGCT-AAGCCCAAACCATTTAAAACTCAATTAATA
1 AAATATTAAATATATTATATATAACATATGAGCTCAA-CCCAAACCATTTAAAACCCAATTAATA
*
49655 ATTTAAGATCCAATAACTTTTAAACTTAAATCAATACTAATTAATTAAAAAATTTATCTAAAATT
65 ATTTAAGATCCAATAACTTTTAAACTTAAATCAATACTAATTAATTAAAAAATTTATATAAAATT
49720 TTTATTTTATAATTATATATTATTTAAATTAATTATAAACTTTTTTTGAATTAA
130 TTTATTTTATAATTATATATTATTTAAATTAATTATAAACTTTTTTTGAATTAA
* *
49774 AAATATTTAAT-TTTTATATA
1 AAATATTAAATATATTATATA
49794 AATTATAAAA
Statistics
Matches: 190, Mismatches: 10, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
182 10 0.05
183 127 0.67
184 53 0.28
ACGTcount: A:0.46, C:0.09, G:0.03, T:0.43
Consensus pattern (183 bp):
AAATATTAAATATATTATATATAACATATGAGCTCAACCCAAACCATTTAAAACCCAATTAATAA
TTTAAGATCCAATAACTTTTAAACTTAAATCAATACTAATTAATTAAAAAATTTATATAAAATTT
TTATTTTATAATTATATATTATTTAAATTAATTATAAACTTTTTTTGAATTAA
Found at i:56945 original size:18 final size:18
Alignment explanation
Indices: 56924--56958 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
56914 CTTTACTTGC
* *
56924 AGGTGTTGTGTATGTAGT
1 AGGTGATGTGTACGTAGT
56942 AGGTGATGTGTACGTAG
1 AGGTGATGTGTACGTAG
56959 ATTTGTTCTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.20, C:0.03, G:0.40, T:0.37
Consensus pattern (18 bp):
AGGTGATGTGTACGTAGT
Found at i:60040 original size:21 final size:20
Alignment explanation
Indices: 59993--60038 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 20
59983 TATTAAATTA
*
59993 TAAAATAGATAAAAATATAT
1 TAAATTAGATAAAAATATAT
60013 TGAAATTAGATAAATAATCATAT
1 T-AAATTAGATAAA-AAT-ATAT
60036 TAA
1 TAA
60039 TTTTTTTGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
20 1 0.05
21 11 0.50
22 5 0.23
23 5 0.23
ACGTcount: A:0.59, C:0.02, G:0.07, T:0.33
Consensus pattern (20 bp):
TAAATTAGATAAAAATATAT
Found at i:60196 original size:29 final size:29
Alignment explanation
Indices: 60164--60220 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
60154 GATGAATTAC
60164 TGTTTATCTCTAGAATAGAGATAGAAATA
1 TGTTTATCTCTAGAATAGAGATAGAAATA
*
60193 TGTTTATCTCTAGAGTAGAGATAGAAAT
1 TGTTTATCTCTAGAATAGAGATAGAAAT
60221 GCGCTAGAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.39, C:0.07, G:0.19, T:0.35
Consensus pattern (29 bp):
TGTTTATCTCTAGAATAGAGATAGAAATA
Found at i:62480 original size:30 final size:30
Alignment explanation
Indices: 62445--62503 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
62435 CGAATTCAGG
* *
62445 ATTAAATTAATATTTTATTTAAAGTTTAAA
1 ATTAAAATAATATTTTATTTAAAATTTAAA
62475 ATTAAAATAATATTTTATTTAAAATTTAA
1 ATTAAAATAATATTTTATTTAAAATTTAA
62504 TGTTCAAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (30 bp):
ATTAAAATAATATTTTATTTAAAATTTAAA
Found at i:66703 original size:20 final size:20
Alignment explanation
Indices: 66609--66957 Score: 418
Period size: 20 Copynumber: 17.4 Consensus size: 20
66599 GATTTTCCAT
* ** *
66609 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGTATCCGTA
* *
66629 AATCGCAACGCG-AACACATA
1 AATCGCAACGCGTATC-CGTA
66649 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
66669 AATCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
**
66689 AATCGCAACGCGTATGGGTA
1 AATCGCAACGCGTATCCGTA
*
66709 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
66729 TATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
66749 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
* *
66769 AACCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
66789 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
66809 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
66829 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
66849 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
66869 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
66889 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
66909 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
66929 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
66949 AATCACAAC
1 AATCGCAAC
66958 ACTGAAATTT
Statistics
Matches: 285, Mismatches: 36, Indels: 16
0.85 0.11 0.05
Matches are distributed among these distances:
19 3 0.01
20 279 0.98
21 3 0.01
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.20
Consensus pattern (20 bp):
AATCGCAACGCGTATCCGTA
Found at i:67669 original size:24 final size:24
Alignment explanation
Indices: 67630--67676 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
67620 AAATTTGGTC
67630 TTGGTCAATATCCGGACTTTGATA
1 TTGGTCAATATCCGGACTTTGATA
*
67654 TTGGTCAATA-CACGGATTTTGAT
1 TTGGTCAATATC-CGGACTTTGAT
67677 GATGTTTCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (24 bp):
TTGGTCAATATCCGGACTTTGATA
Found at i:67868 original size:12 final size:12
Alignment explanation
Indices: 67851--67875 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
67841 ATATAATCCT
67851 GAAGAAGAAAAA
1 GAAGAAGAAAAA
67863 GAAGAAGAAAAA
1 GAAGAAGAAAAA
67875 G
1 G
67876 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:70200 original size:19 final size:19
Alignment explanation
Indices: 70178--70502 Score: 387
Period size: 19 Copynumber: 18.4 Consensus size: 19
70168 CGGAAAATAC
*
70178 AATCGCAACGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
70197 AATCCCAA--C---ATGAA
1 AATCGCAATGCGAAATGAA
70211 AATCGCAATGCGGAAATGAA
1 AATCGCAATGC-GAAATGAA
*
70231 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
70245 AATCGCAATGCGAAATG-A
1 AATCGCAATGCGAAATGAA
70263 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
70282 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
70296 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
70315 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
70334 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
70348 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
* *
70367 AATCACAATGCGAAATTAA
1 AATCGCAATGCGAAATGAA
*
70386 AATCGCAATACGAAATGAA
1 AATCGCAATGCGAAATGAA
70405 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
70424 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
70443 AATCGCAA--CGAAA-G--
1 AATCGCAATGCGAAATGAA
70457 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
70476 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
70495 AATCGCAA
1 AATCGCAA
70503 CGAGATAATC
Statistics
Matches: 265, Mismatches: 14, Indels: 54
0.80 0.04 0.16
Matches are distributed among these distances:
14 50 0.19
15 3 0.01
16 13 0.05
17 12 0.05
18 21 0.08
19 153 0.58
20 13 0.05
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.14
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:70540 original size:52 final size:52
Alignment explanation
Indices: 70206--70524 Score: 532
Period size: 52 Copynumber: 6.0 Consensus size: 52
70196 AAATCCCAAC
70206 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
70259 ATG-AAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
70310 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
* * *
70362 ATGAAAATCACAATGCGAAATTAAAATCGCAATACGAAATGAAAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGC-A-ACG--A-GAGAATCGCAATGCGAA
*
70419 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
*
70471 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGATAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
70523 AT
1 AT
70525 TATAAACGCA
Statistics
Matches: 251, Mismatches: 9, Indels: 13
0.92 0.03 0.05
Matches are distributed among these distances:
51 39 0.16
52 155 0.62
53 5 0.02
54 3 0.01
55 3 0.01
56 2 0.01
57 44 0.18
ACGTcount: A:0.47, C:0.17, G:0.21, T:0.15
Consensus pattern (52 bp):
ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
Found at i:70640 original size:19 final size:19
Alignment explanation
Indices: 70531--70632 Score: 151
Period size: 19 Copynumber: 5.6 Consensus size: 19
70521 AAATTATAAA
70531 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
70550 CCGCATTGCGATTTTCATTT
1 -CGCATTGCGATTTTCATTT
*
70570 CGCATTGCGA--TTC-TCT
1 CGCATTGCGATTTTCATTT
70586 CG--TTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
70603 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
70622 CGCATTGCGAT
1 CGCATTGCGAT
70633 AGTCATTTTT
Statistics
Matches: 75, Mismatches: 2, Indels: 11
0.85 0.02 0.12
Matches are distributed among these distances:
14 6 0.08
16 7 0.09
17 7 0.09
19 36 0.48
20 19 0.25
ACGTcount: A:0.15, C:0.24, G:0.18, T:0.44
Consensus pattern (19 bp):
CGCATTGCGATTTTCATTT
Found at i:70757 original size:14 final size:14
Alignment explanation
Indices: 70738--70774 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
70728 CATCAATTAC
70738 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
70752 ACAAATCATCTTTT
1 ACAAATCAACTTTT
70766 ACAAATCAA
1 ACAAATCAA
70775 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:72704 original size:14 final size:14
Alignment explanation
Indices: 72685--72741 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
72675 GCGAAATGAA
*
72685 AATCGCAACGACAG
1 AATCGCAACGAAAG
72699 AATCGCAATGCGAAATG
1 AATCGCAA--CGAAA-G
72716 AAAATCGCAACGAAAG
1 --AATCGCAACGAAAG
72732 AATCGCAACG
1 AATCGCAACG
72742 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 18 0.49
16 5 0.14
17 6 0.16
19 8 0.22
ACGTcount: A:0.46, C:0.23, G:0.21, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAAAG
Found at i:72712 original size:33 final size:33
Alignment explanation
Indices: 72666--72758 Score: 168
Period size: 33 Copynumber: 2.8 Consensus size: 33
72656 GAGAAACCAA
*
72666 AATCGCAACGCGAAATGAAAATCGCAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
*
72699 AATCGCAATGCGAAATGAAAATCGCAACGAAAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
72732 AATCGCAACGCGAAATGAAAATCGCAA
1 AATCGCAACGCGAAATGAAAATCGCAA
72759 TGCGATTTTG
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.47, C:0.22, G:0.20, T:0.11
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAAAG
Found at i:72723 original size:19 final size:19
Alignment explanation
Indices: 72629--72763 Score: 119
Period size: 19 Copynumber: 7.6 Consensus size: 19
72619 TAGTTTACTT
* *
72629 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAA-TGAAAA
* **
72649 TCGCAACGAGAAACCAAAA
1 TCGCAACGCGAAATGAAAA
72668 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
72687 TCGCAA--CGACA-G--AA
1 TCGCAACGCGAAATGAAAA
*
72701 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
72720 TCGCAA--CGAAA-G--AA
1 TCGCAACGCGAAATGAAAA
72734 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
72753 TCGCAATGCGA
1 TCGCAACGCGA
72764 TTTTGGTTTC
Statistics
Matches: 95, Mismatches: 10, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 16 0.17
16 11 0.12
17 11 0.12
19 46 0.48
20 11 0.12
ACGTcount: A:0.47, C:0.23, G:0.19, T:0.11
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:72781 original size:19 final size:19
Alignment explanation
Indices: 72759--72887 Score: 125
Period size: 19 Copynumber: 7.3 Consensus size: 19
72749 AAAATCGCAA
72759 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
72778 TGCGATCTT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
72792 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
72811 TGCGATTCT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
**
72825 TGCGATTTTCATTTCGCGT
1 TGCGATTTTGGTTTCGCGT
72844 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
* *
72863 TGCGATTTTAAGTTTCGTGT
1 TGCGATTTT-GGTTTCGCGT
72883 TGCGA
1 TGCGA
72888 AAGTAAACTA
Statistics
Matches: 90, Mismatches: 9, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 22 0.24
15 1 0.01
16 2 0.02
17 2 0.02
18 2 0.02
19 48 0.53
20 13 0.14
ACGTcount: A:0.09, C:0.17, G:0.29, T:0.46
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:72801 original size:33 final size:33
Alignment explanation
Indices: 72759--72850 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 33
72749 AAAATCGCAA
72759 TGCGATTTTGGTTTCGCGTTGCGA-TCTTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTC-TGTCGT
72792 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
**
72825 TGCGATTTTCATTTCGCGTTGCGATT
1 TGCGATTTTGGTTTCGCGTTGCGATT
72851 TTGGTTTCGC
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
33 54 0.96
34 2 0.04
ACGTcount: A:0.08, C:0.18, G:0.28, T:0.46
Consensus pattern (33 bp):
TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
Found at i:73272 original size:91 final size:93
Alignment explanation
Indices: 72931--73308 Score: 735
Period size: 93 Copynumber: 4.1 Consensus size: 93
72921 TTGAATGGAT
72931 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
72996 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
73024 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
73089 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
73117 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATA-TATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
73181 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
73209 -AATTTACTTTCAACCAAAAGACAAAAC-AAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
73272 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
73300 AAATTTACT
1 AAATTTACT
73309 AAGCAATCTA
Statistics
Matches: 283, Mismatches: 0, Indels: 5
0.98 0.00 0.02
Matches are distributed among these distances:
90 10 0.04
91 80 0.28
92 61 0.22
93 132 0.47
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.22
Consensus pattern (93 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
AGTTTAGCAGAATTGGCAGCAACCGAAC
Found at i:73290 original size:183 final size:186
Alignment explanation
Indices: 72931--73308 Score: 735
Period size: 183 Copynumber: 2.0 Consensus size: 186
72921 TTGAATGGAT
72931 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
72996 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
66 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
73061 TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
131 TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
73117 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATA-TATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
73181 AGTTTAGCAGAATTGGCAGCAACCGAAC-AATTTACTTTCAACCAAAAGACAAAAC-AAGACAAA
66 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
73244 TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
131 TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
73300 AAATTTACT
1 AAATTTACT
73309 AAGCAATCTA
Statistics
Matches: 192, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
183 73 0.38
184 27 0.14
185 53 0.28
186 39 0.20
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.22
Consensus pattern (186 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
Found at i:75032 original size:14 final size:14
Alignment explanation
Indices: 75013--75102 Score: 81
Period size: 14 Copynumber: 5.7 Consensus size: 14
75003 TTGAAATGAA
75013 AATCGCAACGAGAG
1 AATCGCAACGAGAG
75027 AATCGCAACGCGAGATG
1 AATCGCAA--CGAGA-G
75044 ACAATCGCAACGAGAG
1 --AATCGCAACGAGAG
*
75060 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
75079 AATCGCAACGAGAG
1 AATCGCAACGAGAG
75093 AATCGCAACG
1 AATCGCAACG
75103 CGAAATGAAA
Statistics
Matches: 64, Mismatches: 2, Indels: 20
0.74 0.02 0.23
Matches are distributed among these distances:
14 28 0.44
15 1 0.02
16 8 0.12
17 8 0.12
18 1 0.02
19 18 0.28
ACGTcount: A:0.42, C:0.23, G:0.26, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:75050 original size:33 final size:33
Alignment explanation
Indices: 75005--75119 Score: 212
Period size: 33 Copynumber: 3.5 Consensus size: 33
74995 TCTTTTGGTT
75005 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
* *
75038 GAGATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
75071 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
75104 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
75120 TGCGATTTTG
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 78 1.00
ACGTcount: A:0.45, C:0.21, G:0.24, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:75051 original size:19 final size:18
Alignment explanation
Indices: 75012--75124 Score: 88
Period size: 19 Copynumber: 6.8 Consensus size: 18
75002 GTTGAAATGA
75012 AAATCGCAA--CGAGA-G
1 AAATCGCAACGCGAGATG
75027 -AATCGCAACGCGAGATG
1 AAATCGCAACGCGAGATG
75044 ACAATCGCAA--CGAGA-G
1 A-AATCGCAACGCGAGATG
*
75060 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
75077 AAAATCGCAA--CGAGA-G
1 -AAATCGCAACGCGAGATG
*
75093 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
*
75110 AAAATCGCAATGCGA
1 -AAATCGCAACGCGA
75125 TTTTGGTTTC
Statistics
Matches: 79, Mismatches: 4, Indels: 26
0.72 0.04 0.24
Matches are distributed among these distances:
14 24 0.30
16 15 0.19
17 12 0.15
19 28 0.35
ACGTcount: A:0.43, C:0.22, G:0.25, T:0.10
Consensus pattern (18 bp):
AAATCGCAACGCGAGATG
Found at i:75155 original size:14 final size:14
Alignment explanation
Indices: 75136--75190 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
75126 TTTGGTTTCG
75136 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
75150 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
75169 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
75183 CGTTGCGA
1 CGTTGCGA
75191 CAGTCATTCT
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 18 0.53
16 3 0.09
17 3 0.09
19 10 0.29
ACGTcount: A:0.09, C:0.25, G:0.24, T:0.42
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:75168 original size:33 final size:33
Alignment explanation
Indices: 75120--75190 Score: 124
Period size: 33 Copynumber: 2.2 Consensus size: 33
75110 AAAATCGCAA
**
75120 TGCGATTTTGGTTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
75153 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
75186 TGCGA
1 TGCGA
75191 CAGTCATTCT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.08, C:0.23, G:0.25, T:0.44
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
Found at i:75198 original size:33 final size:33
Alignment explanation
Indices: 75131--75212 Score: 119
Period size: 33 Copynumber: 2.5 Consensus size: 33
75121 GCGATTTTGG
***
75131 TTTCGCGTTGCGATTCTCTCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
75164 TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
1 TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
*
75197 TTCTCTCGTTGCGATT
1 TT-TCGCGTTGCGATT
75213 TTCATTTATC
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
33 32 0.73
34 12 0.27
ACGTcount: A:0.10, C:0.26, G:0.22, T:0.43
Consensus pattern (33 bp):
TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
Found at i:75217 original size:20 final size:20
Alignment explanation
Indices: 75143--75231 Score: 75
Period size: 20 Copynumber: 4.8 Consensus size: 20
75133 TCGCGTTGCG
75143 ATTCTCTCGTTGCGATTTTC
1 ATTCTCTCGTTGCGATTTTC
*
75163 ATT-TCGCGTTGCG------
1 ATTCTCTCGTTGCGATTTTC
***
75176 ATTCTCTCGTTGCGACAGTC
1 ATTCTCTCGTTGCGATTTTC
75196 ATTCTCTCGTTGCGATTTTC
1 ATTCTCTCGTTGCGATTTTC
*
75216 ATTTATCTCGTTGCGA
1 A-TTCTCTCGTTGCGA
75232 CTCTTCTGCA
Statistics
Matches: 55, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
13 3 0.05
14 9 0.16
19 9 0.16
20 21 0.38
21 13 0.24
ACGTcount: A:0.12, C:0.25, G:0.19, T:0.44
Consensus pattern (20 bp):
ATTCTCTCGTTGCGATTTTC
Found at i:75353 original size:33 final size:33
Alignment explanation
Indices: 75311--75381 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
75301 AATACTAACT
*
75311 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
* *
75344 TGAAAATCGCAACGACAGAATCGTAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
75377 TGAAA
1 TGAAA
75382 TCTAAGTGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.48, C:0.18, G:0.23, T:0.11
Consensus pattern (33 bp):
TGAAAATCGCAACGACAGAATAGCAACGCGAAA
Found at i:75615 original size:22 final size:22
Alignment explanation
Indices: 75563--75617 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
75553 TGGTTGTGAG
**
75563 GGATTTCGCCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
**
75585 GGAAATCTTCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
75607 GGATTTCTTCG
1 GGATTTCTTCG
75618 CCGTAGAGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.20, C:0.16, G:0.40, T:0.24
Consensus pattern (22 bp):
GGATTTCTTCGGAGATGGGGAC
Found at i:75788 original size:20 final size:20
Alignment explanation
Indices: 75763--75956 Score: 221
Period size: 20 Copynumber: 9.7 Consensus size: 20
75753 CTTTAAATAT
75763 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
75783 CGCGTTGCGATTTTATGTATTA
1 CGCGTTGCGA-TTTACGGA-TA
*
75805 -TCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
75824 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
* **
75844 CGCATTGCGATTTACCCATA
1 CGCGTTGCGATTTACGGATA
75864 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
75884 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
75904 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
75924 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
75944 CGCGTTGCGATTT
1 CGCGTTGCGATTT
75957 TTGAAAATCG
Statistics
Matches: 147, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
19 2 0.01
20 128 0.87
21 15 0.10
22 2 0.01
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.36
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:75950 original size:60 final size:60
Alignment explanation
Indices: 75763--75956 Score: 253
Period size: 60 Copynumber: 3.2 Consensus size: 60
75753 CTTTAAATAT
**
75763 CGCGTTGCGATTTACGGATACGCGTTGCGATTTTATGTATTATCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGA-TTTATGTATTCGCGTTGCGATTTACGGATA
* * *** *
75824 CGCGTTGCGATATACGGATACGCATTGCGATTTACCCATACGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
* * * ** *
75884 CACGTTGCGATTTACGGATACGCGTTGCGATTTATGTGTTCGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
75944 CGCGTTGCGATTT
1 CGCGTTGCGATTT
75957 TTGAAAATCG
Statistics
Matches: 112, Mismatches: 21, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
60 84 0.75
61 28 0.25
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.36
Consensus pattern (60 bp):
CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
Found at i:75967 original size:21 final size:20
Alignment explanation
Indices: 75923--76021 Score: 72
Period size: 21 Copynumber: 4.8 Consensus size: 20
75913 ATTTATGTGT
* * *
75923 TCGCGTTGCGATTTTCATAT
1 TCGCGTTGCGATTTTGAAAA
75943 TCGCGTTGCGATTTTTGAAAA
1 TCGCGTTGCGA-TTTTGAAAA
** * **
75964 TCGCAATGCGAATTTGTACCA
1 TCGCGTTGCGATTTTG-AAAA
* * *
75985 TCGCATCGCGATTTTCAAGAA
1 TCGCGTTGCGATTTTGAA-AA
76006 TCGCGTTGCGATTTTG
1 TCGCGTTGCGATTTTG
76022 GAAACTGATT
Statistics
Matches: 59, Mismatches: 17, Indels: 5
0.73 0.21 0.06
Matches are distributed among these distances:
20 16 0.27
21 43 0.73
ACGTcount: A:0.21, C:0.20, G:0.22, T:0.36
Consensus pattern (20 bp):
TCGCGTTGCGATTTTGAAAA
Found at i:76036 original size:20 final size:20
Alignment explanation
Indices: 76011--76062 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
76001 AAGAATCGCG
*
76011 TTGCGATTTTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
76031 TTGCGATTCTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
76051 TTGCGATTCTGG
1 TTGCGATTCTGG
76063 GGATCGCGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.21, C:0.13, G:0.27, T:0.38
Consensus pattern (20 bp):
TTGCGATTCTGGAAACTGAT
Found at i:78566 original size:23 final size:23
Alignment explanation
Indices: 78538--78594 Score: 114
Period size: 23 Copynumber: 2.5 Consensus size: 23
78528 AGAGAATGAA
78538 AGAGCAAAAGAACATAAAGTCAG
1 AGAGCAAAAGAACATAAAGTCAG
78561 AGAGCAAAAGAACATAAAGTCAG
1 AGAGCAAAAGAACATAAAGTCAG
78584 AGAGCAAAAGA
1 AGAGCAAAAGA
78595 CTTGACAGGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.58, C:0.12, G:0.23, T:0.07
Consensus pattern (23 bp):
AGAGCAAAAGAACATAAAGTCAG
Found at i:79051 original size:20 final size:20
Alignment explanation
Indices: 79002--79052 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 20
78992 ATAACCAACG
* * *
79002 ATTTCGCAACGCGATTTCGA
1 ATTTCGCAACACGAATTCCA
*
79022 A-TTCGTAACACGAATTCCA
1 ATTTCGCAACACGAATTCCA
79041 ATTTCGCAACAC
1 ATTTCGCAACAC
79053 AGTTTTTGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
19 15 0.60
20 10 0.40
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (20 bp):
ATTTCGCAACACGAATTCCA
Found at i:79077 original size:40 final size:39
Alignment explanation
Indices: 79002--79112 Score: 98
Period size: 40 Copynumber: 2.7 Consensus size: 39
78992 ATAACCAACG
* * *
79002 ATTTCGCAACGCGATTTCGAATTCGTAACACGAATTCCA
1 ATTTCGCAACACGATTTCGAATTCGCAACAAGAATTCCA
* * *
79041 ATTTCGCAACACAGTTTTTGAATTCGCAACAAGAATT-TA
1 ATTTCGCAACAC-GATTTCGAATTCGCAACAAGAATTCCA
* *
79080 CATTTCACAACACGAATTTACCAAATTCGCAAC
1 -ATTTCGCAACACG-ATTT--CGAATTCGCAAC
79113 TCAAATTCGT
Statistics
Matches: 57, Mismatches: 10, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
39 13 0.23
40 34 0.60
42 10 0.18
ACGTcount: A:0.35, C:0.24, G:0.12, T:0.29
Consensus pattern (39 bp):
ATTTCGCAACACGATTTCGAATTCGCAACAAGAATTCCA
Found at i:79406 original size:22 final size:21
Alignment explanation
Indices: 79376--79435 Score: 70
Period size: 20 Copynumber: 2.9 Consensus size: 21
79366 AAACGCGGTA
* *
79376 AATTTGAGTTGTGAAATTGGCG
1 AATTCGAGTTGTGAAATT-CCG
*
79398 AATTCGAGTTGCGAAA-TCCG
1 AATTCGAGTTGTGAAATTCCG
79418 AATTCGAGTTGT-AAATTC
1 AATTCGAGTTGTGAAATTC
79436 GATAAATTCG
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
19 3 0.09
20 15 0.45
21 1 0.03
22 14 0.42
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (21 bp):
AATTCGAGTTGTGAAATTCCG
Found at i:79531 original size:20 final size:22
Alignment explanation
Indices: 79487--79542 Score: 82
Period size: 20 Copynumber: 2.7 Consensus size: 22
79477 AACGTGATAA
79487 AATT-GAGTTGCGAAATTGACG
1 AATTCGAGTTGCGAAATTGACG
*
79508 AATTCGAGTTGCGAAA-T-CCG
1 AATTCGAGTTGCGAAATTGACG
79528 AATTCGAGTTGCGAA
1 AATTCGAGTTGCGAA
79543 TTTTGTAAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
20 17 0.52
21 5 0.15
22 11 0.33
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.27
Consensus pattern (22 bp):
AATTCGAGTTGCGAAATTGACG
Found at i:79552 original size:110 final size:110
Alignment explanation
Indices: 79350--79573 Score: 333
Period size: 110 Copynumber: 2.0 Consensus size: 110
79340 GACCGGTTAT
* * * * *
79350 AATTACTTAAATAGGTAAACGCGGTAAATTTGAGTTGTGAAATTGGCGAATTCGAGTTGCGAAAT
1 AATTACCTAAATAGGTAAACGCGATAAAATTGAGTTGCGAAATTGACGAATTCGAGTTGCGAAAT
* *
79415 CCGAATTCGAGTTGTAAATTCGATAAATTCGTGTTGCGAAATGTA
66 CCGAATTCGAGTTGGAAATTCGATAAATTCGTGTTACGAAATGTA
* *
79460 AATTACCTATATAGGTAAACGTGATAAAATTGAGTTGCGAAATTGACGAATTCGAGTTGCGAAAT
1 AATTACCTAAATAGGTAAACGCGATAAAATTGAGTTGCGAAATTGACGAATTCGAGTTGCGAAAT
* *
79525 CCGAATTCGAGTTGCGAATTTTG-TAAATTCGTGTTACGAAATGTA
66 CCGAATTCGAGTTG-GAAATTCGATAAATTCGTGTTACGAAATGTA
79570 AATT
1 AATT
79574 CTTGTTGCGA
Statistics
Matches: 102, Mismatches: 11, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
110 97 0.95
111 5 0.05
ACGTcount: A:0.34, C:0.11, G:0.22, T:0.32
Consensus pattern (110 bp):
AATTACCTAAATAGGTAAACGCGATAAAATTGAGTTGCGAAATTGACGAATTCGAGTTGCGAAAT
CCGAATTCGAGTTGGAAATTCGATAAATTCGTGTTACGAAATGTA
Found at i:79564 original size:22 final size:22
Alignment explanation
Indices: 79528--79586 Score: 68
Period size: 20 Copynumber: 2.8 Consensus size: 22
79518 GCGAAATCCG
* *
79528 AATTCGAGTTGCGAATTTTGTA
1 AATTCGTGTTGCGAATTATGTA
*
79550 AATTCGTGTTACGAA--ATGTA
1 AATTCGTGTTGCGAATTATGTA
*
79570 AATTCTTGTTGCGAATT
1 AATTCGTGTTGCGAATT
79587 CGTTGGTTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
20 17 0.57
22 13 0.43
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (22 bp):
AATTCGTGTTGCGAATTATGTA
Found at i:87061 original size:12 final size:12
Alignment explanation
Indices: 87037--87071 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
87027 ATTTTCAGCA
87037 TTTATTGTTATTT
1 TTTATT-TTATTT
87050 TTTATTTTATTT
1 TTTATTTTATTT
*
87062 TTTATATTAT
1 TTTATTTTAT
87072 ATATTTGTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 15 0.71
13 6 0.29
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (12 bp):
TTTATTTTATTT
Found at i:87387 original size:57 final size:57
Alignment explanation
Indices: 87313--87423 Score: 195
Period size: 57 Copynumber: 1.9 Consensus size: 57
87303 AGATGAATTT
* *
87313 GGATATACATTTTGTGTTCAGATATACTTTTCTCGAGATGATCGACTCTTATTTACG
1 GGATATACATTTTGTGTTCAGAGATAATTTTCTCGAGATGATCGACTCTTATTTACG
*
87370 GGATATACATTTTGTGTTCAGAGATAATTTTCTCGAGATGATCGACTTTTATTT
1 GGATATACATTTTGTGTTCAGAGATAATTTTCTCGAGATGATCGACTCTTATTT
87424 GCGGTTGTCG
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
57 51 1.00
ACGTcount: A:0.25, C:0.14, G:0.18, T:0.43
Consensus pattern (57 bp):
GGATATACATTTTGTGTTCAGAGATAATTTTCTCGAGATGATCGACTCTTATTTACG
Found at i:91174 original size:35 final size:35
Alignment explanation
Indices: 91128--91203 Score: 125
Period size: 35 Copynumber: 2.2 Consensus size: 35
91118 AAAACAGTCC
* *
91128 TCAATTTCATTCTAAACCCCAATTTCCAAAGTAAT
1 TCAATTTCATTCTAAACCCCAAATTCCAAAATAAT
*
91163 TCAATTTCATTCTAAACCCTAAATTCCAAAATAAT
1 TCAATTTCATTCTAAACCCCAAATTCCAAAATAAT
91198 TCAATT
1 TCAATT
91204 AAATTCAATT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.39, C:0.24, G:0.01, T:0.36
Consensus pattern (35 bp):
TCAATTTCATTCTAAACCCCAAATTCCAAAATAAT
Found at i:91759 original size:130 final size:130
Alignment explanation
Indices: 91600--91847 Score: 408
Period size: 130 Copynumber: 1.9 Consensus size: 130
91590 TATTTATATA
**
91600 ATCAATTTGGTCCTAAATTAAATAGAATTTAATAAAGTAATCATTTAATTAGGATCTGACATGTG
1 ATCAATTTGGTCCTAAATTAAATAGAATTTAATAAAGTAATCATTTAACCAGGATCTGACATGTG
* *
91665 TTAGCACATGATCATGACACGTGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCT
66 TTAACACATGATCATGACACATGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCT
*
91730 ATCAATTTGGTCCTAAATTAAATTA-AATTTAATAAATTAATCATTTAACCAGGATCTGACATGT
1 ATCAATTTGGTCCTAAATTAAA-TAGAATTTAATAAAGTAATCATTTAACCAGGATCTGACATGT
* * *
91794 GTTAACACATGATCATGATATATGTTATTGGTGACACATGTCACCACCTAATTA
65 GTTAACACATGATCATGACACATGTCATTGGTGACACATGTCACCACCTAATTA
91848 GAAGAAAATT
Statistics
Matches: 109, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
130 107 0.98
131 2 0.02
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.35
Consensus pattern (130 bp):
ATCAATTTGGTCCTAAATTAAATAGAATTTAATAAAGTAATCATTTAACCAGGATCTGACATGTG
TTAACACATGATCATGACACATGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCT
Found at i:91878 original size:130 final size:129
Alignment explanation
Indices: 91614--91878 Score: 293
Period size: 130 Copynumber: 2.0 Consensus size: 129
91604 ATTTGGTCCT
** *
91614 AAATTAAATAGAATTTAATAAAGTAATCATTTAATTAGGATCTGACATGTGTTAGCACATGATCA
1 AAATTAAATAGAATTTAATAAAGTAATCATTTAACCAGGATCTGACATGTGTTAACACATGATCA
* *** * * **** *
91679 TGACACGTGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCTATCAATTTGGTCCT
66 TGACACATGTCATTGGTGACACATGTCACCACCTAATTAAGAAAATAAGCTATCAAAGAAGT-CA
*
91744 AAATTAAATTA-AATTTAATAAATTAATCATTTAACCAGGATCTGACATGTGTTAACACATGATC
1 AAATTAAA-TAGAATTTAATAAAGTAATCATTTAACCAGGATCTGACATGTGTTAACACATGATC
* * * *
91808 ATGATATATGTTATTGGTGACACATGTCACCACCTAATTAGAAGAAAATTAAGTTA-CAAAGAAG
65 ATGACACATGTCATTGGTGACACATGTCACCACCTAATT--AAGAAAA-TAAGCTATCAAAGAAG
91872 T-A
127 TCA
91874 AAATT
1 AAATT
91879 TGGGTCTTGG
Statistics
Matches: 112, Mismatches: 19, Indels: 8
0.81 0.14 0.06
Matches are distributed among these distances:
130 97 0.87
131 2 0.02
132 8 0.07
133 5 0.04
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.34
Consensus pattern (129 bp):
AAATTAAATAGAATTTAATAAAGTAATCATTTAACCAGGATCTGACATGTGTTAACACATGATCA
TGACACATGTCATTGGTGACACATGTCACCACCTAATTAAGAAAATAAGCTATCAAAGAAGTCA
Found at i:92204 original size:28 final size:26
Alignment explanation
Indices: 92173--92233 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
92163 AGTTGATACA
*
92173 ATATTTTAAAAGAATAAATTTAAGATTT
1 ATATTTT-AAA-AATAAATTTAAGAATT
* * *
92201 ATATTTTTAAACTAAATTTAATAATT
1 ATATTTTAAAAATAAATTTAAGAATT
92227 ATATTTT
1 ATATTTT
92234 CATATTTATA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 20 0.69
27 2 0.07
28 7 0.24
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.49
Consensus pattern (26 bp):
ATATTTTAAAAATAAATTTAAGAATT
Found at i:92331 original size:16 final size:18
Alignment explanation
Indices: 92310--92343 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
92300 ATTTCTTATT
92310 AAAAATA-AAAT-ATTCA
1 AAAAATATAAATGATTCA
92326 AAAAATATAAATGATTCA
1 AAAAATATAAATGATTCA
92344 TACGTTAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 4 0.25
18 5 0.31
ACGTcount: A:0.65, C:0.06, G:0.03, T:0.26
Consensus pattern (18 bp):
AAAAATATAAATGATTCA
Found at i:94951 original size:20 final size:20
Alignment explanation
Indices: 94926--94963 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
94916 TAACGCTAGA
*
94926 GGGGAATCGATACCCCCAGG
1 GGGGAACCGATACCCCCAGG
*
94946 GGGGAACCGATTCCCCCA
1 GGGGAACCGATACCCCCA
94964 TAATAAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.24, C:0.34, G:0.32, T:0.11
Consensus pattern (20 bp):
GGGGAACCGATACCCCCAGG
Found at i:95775 original size:103 final size:103
Alignment explanation
Indices: 95447--95763 Score: 598
Period size: 103 Copynumber: 3.1 Consensus size: 103
95437 GTAGAGGGTC
95447 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
*
95512 TTGATCCTTGGCATATGCATATGATTCTTAAGGAATGA
66 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
*
95550 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAGGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
*
95615 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
*
95653 TATGTGGTCCTTCGAGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
95718 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
95756 TATGTGGT
1 TATGTGGT
95764 TCTTATGGAC
Statistics
Matches: 208, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 208 1.00
ACGTcount: A:0.26, C:0.13, G:0.25, T:0.36
Consensus pattern (103 bp):
TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
Found at i:95843 original size:23 final size:23
Alignment explanation
Indices: 95784--95846 Score: 74
Period size: 23 Copynumber: 2.7 Consensus size: 23
95774 ATTATTATAT
95784 GGCACTACA-GTGCAATTCTACGC
1 GGCACT-CAGGTGCAATTCTACGC
* * *
95807 GGCACTCCGATGCAATTCTACGT
1 GGCACTCAGGTGCAATTCTACGC
*
95830 GGCACTTAGGTGCAATT
1 GGCACTCAGGTGCAATT
95847 ATATGAGCTG
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
22 1 0.03
23 32 0.97
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (23 bp):
GGCACTCAGGTGCAATTCTACGC
Found at i:96739 original size:31 final size:31
Alignment explanation
Indices: 96692--96765 Score: 112
Period size: 31 Copynumber: 2.4 Consensus size: 31
96682 TAAAACTTAT
*
96692 AATATAATCCCCCAACATTTAGTCCGTTTGC
1 AATATGATCCCCCAACATTTAGTCCGTTTGC
* * *
96723 AATATGGTCCCTCAACATTTAGTCTGTTTGC
1 AATATGATCCCCCAACATTTAGTCCGTTTGC
96754 AATATGATCCCC
1 AATATGATCCCC
96766 GGTGTAACTA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.34
Consensus pattern (31 bp):
AATATGATCCCCCAACATTTAGTCCGTTTGC
Found at i:98620 original size:31 final size:31
Alignment explanation
Indices: 98569--98676 Score: 162
Period size: 31 Copynumber: 3.5 Consensus size: 31
98559 CTTTTAAAAC
** * *
98569 TTGCAATATAATCCCCCAACATTTAGTCCAT
1 TTGCAATATGGTCCCTCAACATTTAGTCCGT
*
98600 TTGCAACATGGTCCCTCAACATTTAGTCCGT
1 TTGCAATATGGTCCCTCAACATTTAGTCCGT
*
98631 TTGCAATATGATCCCTCAACATTTAGTCCGT
1 TTGCAATATGGTCCCTCAACATTTAGTCCGT
98662 TTGCAATATGGTCCC
1 TTGCAATATGGTCCC
98677 CGACGTAACT
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 69 1.00
ACGTcount: A:0.26, C:0.28, G:0.13, T:0.33
Consensus pattern (31 bp):
TTGCAATATGGTCCCTCAACATTTAGTCCGT
Found at i:103480 original size:20 final size:21
Alignment explanation
Indices: 103445--103484 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
103435 TTATATAATT
103445 TTACTCTTTCTATATTTTTAA
1 TTACTCTTTCTATATTTTTAA
*
103466 TTACT-TTTTTATATTTTTA
1 TTACTCTTTCTATATTTTTA
103485 TTGCGTAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.23, C:0.10, G:0.00, T:0.68
Consensus pattern (21 bp):
TTACTCTTTCTATATTTTTAA
Found at i:106525 original size:20 final size:20
Alignment explanation
Indices: 106502--106553 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
106492 AACGCGATCC
106502 CCAGAATCGCAAATCAGTTT
1 CCAGAATCGCAAATCAGTTT
106522 CCAGAATCGCAAATCAGTTT
1 CCAGAATCGCAAATCAGTTT
*
106542 CCAAAATCGCAA
1 CCAGAATCGCAA
106554 CGCGATTCTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.38, C:0.27, G:0.13, T:0.21
Consensus pattern (20 bp):
CCAGAATCGCAAATCAGTTT
Found at i:106692 original size:60 final size:60
Alignment explanation
Indices: 106609--106801 Score: 242
Period size: 60 Copynumber: 3.2 Consensus size: 60
106599 GATTTTCCAT
* ** * *
106609 AATCGCAACGCGAATATGAAAATCGCAACGCGAACACATAAATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGTA
* * *** *
106669 AATCGCAACGTGTATCCGTAAATCGCAACGCGTATGGGTAAATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGTA
* ** *
106729 TATCGCAACGCGTATCCGTAAATCGCAACGATAATACATAAAATTGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAATACAT-AAATCGCAACGCGTATCCGTA
106790 AATCGCAACGCG
1 AATCGCAACGCG
106802 ATATTTAAAG
Statistics
Matches: 110, Mismatches: 22, Indels: 1
0.83 0.17 0.01
Matches are distributed among these distances:
60 80 0.73
61 30 0.27
ACGTcount: A:0.35, C:0.25, G:0.20, T:0.20
Consensus pattern (60 bp):
AATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGTA
Found at i:106703 original size:20 final size:20
Alignment explanation
Indices: 106609--106801 Score: 210
Period size: 20 Copynumber: 9.6 Consensus size: 20
106599 GATTTTCCAT
* ** *
106609 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGTATCCGTA
* *
106629 AATCGCAACGCG-AACACATA
1 AATCGCAACGCGTATC-CGTA
106649 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
106669 AATCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
**
106689 AATCGCAACGCGTATGGGTA
1 AATCGCAACGCGTATCCGTA
*
106709 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
106729 TATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
* * *
106749 AATCGCAACG-ATAATACATAA
1 AATCGCAACGCGT-ATCCGT-A
*
106770 AATTGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
106790 AATCGCAACGCG
1 AATCGCAACGCG
106802 ATATTTAAAG
Statistics
Matches: 143, Mismatches: 25, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
19 2 0.01
20 124 0.87
21 16 0.11
22 1 0.01
ACGTcount: A:0.35, C:0.25, G:0.20, T:0.20
Consensus pattern (20 bp):
AATCGCAACGCGTATCCGTA
Found at i:107221 original size:33 final size:33
Alignment explanation
Indices: 107182--107252 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
107172 TTCACTTAGA
*
107182 TTTCATTTCGCGTTACGATTCTGTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
* *
107215 TTTCATTTCGCGTTGCTATTCTCTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
107248 TTTCA
1 TTTCA
107253 AGTTAGTATT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.11, C:0.23, G:0.18, T:0.48
Consensus pattern (33 bp):
TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
Found at i:107392 original size:14 final size:14
Alignment explanation
Indices: 107373--107427 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
107363 AGAATGACTG
107373 TCGCAACGAGAGAA
1 TCGCAACGAGAGAA
*
107387 TCGCAACGCGAAATGAAAA
1 TCGCAA--CG--A-GAGAA
107406 TCGCAACGAGAGAA
1 TCGCAACGAGAGAA
107420 TCGCAACG
1 TCGCAACG
107428 CGAAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 18 0.53
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.29
ACGTcount: A:0.42, C:0.24, G:0.25, T:0.09
Consensus pattern (14 bp):
TCGCAACGAGAGAA
Found at i:107410 original size:33 final size:33
Alignment explanation
Indices: 107373--107443 Score: 124
Period size: 33 Copynumber: 2.2 Consensus size: 33
107363 AGAATGACTG
**
107373 TCGCAACGAGAGAATCGCAACGCGAAATGAAAA
1 TCGCAACGAGAGAATCGCAACGCGAAACCAAAA
107406 TCGCAACGAGAGAATCGCAACGCGAAACCAAAA
1 TCGCAACGAGAGAATCGCAACGCGAAACCAAAA
107439 TCGCA
1 TCGCA
107444 TTGCGATTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.44, C:0.25, G:0.23, T:0.08
Consensus pattern (33 bp):
TCGCAACGAGAGAATCGCAACGCGAAACCAAAA
Found at i:107461 original size:19 final size:19
Alignment explanation
Indices: 107439--107536 Score: 81
Period size: 19 Copynumber: 5.7 Consensus size: 19
107429 GAAACCAAAA
*
107439 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
107458 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
107472 TCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
107491 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* * *
107505 TCTCGTTGCGATTGTCATC
1 TCGCGTTGCGATTTTCATT
107524 TCGCGTTGCGATT
1 TCGCGTTGCGATT
107537 CTCTCGTTGC
Statistics
Matches: 63, Mismatches: 6, Indels: 20
0.71 0.07 0.22
Matches are distributed among these distances:
14 20 0.32
16 5 0.08
17 6 0.10
19 32 0.51
ACGTcount: A:0.10, C:0.24, G:0.22, T:0.43
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:107480 original size:14 final size:14
Alignment explanation
Indices: 107461--107550 Score: 81
Period size: 14 Copynumber: 5.7 Consensus size: 14
107451 TTTCATTTCG
107461 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
107475 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
107494 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
107508 CGTTGCGATTGTCATCT
1 CGTTGCGA-T-TC-TCT
107525 CGCGTTGCGATTCTCT
1 --CGTTGCGATTCTCT
107541 CGTTGCGATT
1 CGTTGCGATT
107551 TTCATTTCAA
Statistics
Matches: 64, Mismatches: 2, Indels: 20
0.74 0.02 0.23
Matches are distributed among these distances:
14 28 0.44
15 1 0.02
16 8 0.12
17 8 0.12
18 1 0.02
19 18 0.28
ACGTcount: A:0.09, C:0.26, G:0.23, T:0.42
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:107486 original size:33 final size:33
Alignment explanation
Indices: 107444--107558 Score: 212
Period size: 33 Copynumber: 3.5 Consensus size: 33
107434 CAAAATCGCA
107444 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
107477 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
* *
107510 TTGCGATTGTCATCTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
107543 TTGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
107559 AACCAAAAGA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 78 1.00
ACGTcount: A:0.10, C:0.24, G:0.21, T:0.45
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
Found at i:109485 original size:185 final size:186
Alignment explanation
Indices: 109255--109912 Score: 1293
Period size: 185 Copynumber: 3.5 Consensus size: 186
109245 TAGATTGCTT
*
109255 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
109320 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
109385 GTGTATTCTTTAACACTGTGAAATA-TATTTGTCTTTGTTTTGTCTTTTGGTTGAA
131 GTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAA
109440 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
109505 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
109570 GTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAA
131 GTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAA
109626 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATA-TA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
109690 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
109755 GTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAA
131 GTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAA
109811 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
109876 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTT
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTT
109913 ATCCATTCAA
Statistics
Matches: 470, Mismatches: 1, Indels: 3
0.99 0.00 0.01
Matches are distributed among these distances:
185 339 0.72
186 131 0.28
ACGTcount: A:0.22, C:0.13, G:0.19, T:0.46
Consensus pattern (186 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
GTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAA
Found at i:109569 original size:93 final size:93
Alignment explanation
Indices: 109255--109912 Score: 1293
Period size: 93 Copynumber: 7.1 Consensus size: 93
109245 TAGATTGCTT
*
109255 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
109320 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
109348 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATA-TA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
109412 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
109440 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
109505 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
109533 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
109598 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
109626 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATA-TA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
109690 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
109718 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
109783 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
109811 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
109876 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
109904 AGTAAATTT
1 AGTAAATTT
109913 ATCCATTCAA
Statistics
Matches: 562, Mismatches: 1, Indels: 4
0.99 0.00 0.01
Matches are distributed among these distances:
92 184 0.33
93 378 0.67
ACGTcount: A:0.22, C:0.13, G:0.19, T:0.46
Consensus pattern (93 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGAA
Found at i:109752 original size:278 final size:278
Alignment explanation
Indices: 109255--109912 Score: 1307
Period size: 278 Copynumber: 2.4 Consensus size: 278
109245 TAGATTGCTT
*
109255 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
109320 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
109385 GTGTATTCTTTAACACTGTGAAATATATTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTG
131 GTGTATTCTTTAACACTGTGAAATATATTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTG
109450 TTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTG
196 TTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTG
109515 TTTTGTCTTTTGGTTGAA
261 TTTTGTCTTTTGGTTGAA
109533 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
109598 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
109663 GTGTATTCTTTAACACTGTGAAATATATTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTG
131 GTGTATTCTTTAACACTGTGAAATATATTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTG
109728 TTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTG
196 TTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTG
109793 TTTTGTCTTTTGGTTGAA
261 TTTTGTCTTTTGGTTGAA
109811 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
109876 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTT
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTT
109913 ATCCATTCAA
Statistics
Matches: 379, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
278 379 1.00
ACGTcount: A:0.22, C:0.13, G:0.19, T:0.46
Consensus pattern (278 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
GTGTATTCTTTAACACTGTGAAATATATTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTG
TTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTG
TTTTGTCTTTTGGTTGAA
Found at i:109996 original size:19 final size:19
Alignment explanation
Indices: 109956--110117 Score: 165
Period size: 19 Copynumber: 9.3 Consensus size: 19
109946 TAGTTTACTT
* *
109956 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAAC-CAAAA
109976 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
109995 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
*
110014 TCGCAA--CG--A-CAGAA
1 TCGCAACGCGAAACCAAAA
110028 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
*
110047 TCGCAA--CG--A-CAGAA
1 TCGCAACGCGAAACCAAAA
110061 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
*
110080 TCGCAA--CG--A-CAAGA
1 TCGCAACGCGAAACCAAAA
110094 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
110113 TCGCA
1 TCGCA
110118 TTGCGATTTT
Statistics
Matches: 119, Mismatches: 8, Indels: 31
0.75 0.05 0.20
Matches are distributed among these distances:
14 30 0.25
15 3 0.03
16 6 0.05
17 6 0.05
18 3 0.03
19 58 0.49
20 13 0.11
ACGTcount: A:0.46, C:0.30, G:0.17, T:0.07
Consensus pattern (19 bp):
TCGCAACGCGAAACCAAAA
Found at i:110031 original size:14 final size:14
Alignment explanation
Indices: 110012--110068 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
110002 GCGAAACCAA
110012 AATCGCAACGACAG
1 AATCGCAACGACAG
*
110026 AATCGCAACGCGAAACCAA
1 AATCGCAA--CG--A-CAG
110045 AATCGCAACGACAG
1 AATCGCAACGACAG
110059 AATCGCAACG
1 AATCGCAACG
110069 CGAAACCAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.28
ACGTcount: A:0.44, C:0.30, G:0.19, T:0.07
Consensus pattern (14 bp):
AATCGCAACGACAG
Found at i:110035 original size:33 final size:33
Alignment explanation
Indices: 109993--110117 Score: 234
Period size: 33 Copynumber: 3.8 Consensus size: 33
109983 GCGAAACCAA
109993 AATCGCAACGCGAAACCAAAATCGCAACGACAG
1 AATCGCAACGCGAAACCAAAATCGCAACGACAG
110026 AATCGCAACGCGAAACCAAAATCGCAACGACAG
1 AATCGCAACGCGAAACCAAAATCGCAACGACAG
110059 AATCGCAACGCGAAACCAAAATCGCAACGACA-
1 AATCGCAACGCGAAACCAAAATCGCAACGACAG
110091 AGATCGCAACGCGAAACCAAAATCGCA
1 A-ATCGCAACGCGAAACCAAAATCGCA
110118 TTGCGATTTT
Statistics
Matches: 91, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
32 1 0.01
33 90 0.99
ACGTcount: A:0.46, C:0.30, G:0.18, T:0.06
Consensus pattern (33 bp):
AATCGCAACGCGAAACCAAAATCGCAACGACAG
Found at i:110082 original size:52 final size:51
Alignment explanation
Indices: 109956--110087 Score: 151
Period size: 52 Copynumber: 2.5 Consensus size: 51
109946 TAGTTTACTT
**
109956 TCGCAACACGAAACTTAAAATCGCAACGCGAAACCAAAATCGCAACGCGAA
1 TCGCAACACGAAACACAAAATCGCAACGCGAAACCAAAATCGCAACGCGAA
* * * *
110007 AC-CAAAATCGCAACGACAGAATCGCAACGCGAAACCAAAATCGCAACGACAGAA
1 TCGCAACA-CGAAAC-ACAAAATCGCAACGCGAAACCAAAATCGCAACG-C-GAA
*
110061 TCGCAACGCGAAAC-CAAAATCGCAACG
1 TCGCAACACGAAACACAAAATCGCAACG
110088 ACAAGATCGC
Statistics
Matches: 65, Mismatches: 11, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
50 4 0.06
51 6 0.09
52 42 0.65
53 1 0.02
54 9 0.14
55 3 0.05
ACGTcount: A:0.45, C:0.30, G:0.17, T:0.08
Consensus pattern (51 bp):
TCGCAACACGAAACACAAAATCGCAACGCGAAACCAAAATCGCAACGCGAA
Found at i:110135 original size:19 final size:19
Alignment explanation
Indices: 110113--110247 Score: 128
Period size: 19 Copynumber: 7.6 Consensus size: 19
110103 GAAACCAAAA
*
110113 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
110132 TCGCGTTGCGA--TTC-TT
1 TCGCGTTGCGATTTTCATT
110148 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
* *
110165 TCGCATTGCGA--TTC-TG
1 TCGCGTTGCGATTTTCATT
110181 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
**
110198 TCGCGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTTCATT
*
110217 TCGCGTTGCGATTTTAAGTT
1 TCGCGTTGCGATTTTCA-TT
*
110237 TCGTGTTGCGA
1 TCGCGTTGCGA
110248 AAGTAAACTA
Statistics
Matches: 95, Mismatches: 10, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 15 0.16
16 11 0.12
17 11 0.12
19 46 0.48
20 12 0.13
ACGTcount: A:0.11, C:0.19, G:0.24, T:0.46
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:110154 original size:14 final size:14
Alignment explanation
Indices: 110135--110191 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
110125 TTTCATTTCG
110135 CGTTGCGATTCTTT
1 CGTTGCGATTCTTT
110149 CGTTGCGATTTTCATTT
1 CGTTGCGA--TTC-TTT
*
110166 CGCATTGCGATTCTGT
1 CG--TTGCGATTCTTT
110182 CGTTGCGATT
1 CGTTGCGATT
110192 TTCATTTCGC
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 16 0.43
16 7 0.19
17 8 0.22
19 6 0.16
ACGTcount: A:0.11, C:0.21, G:0.23, T:0.46
Consensus pattern (14 bp):
CGTTGCGATTCTTT
Found at i:110160 original size:33 final size:33
Alignment explanation
Indices: 110118--110210 Score: 168
Period size: 33 Copynumber: 2.8 Consensus size: 33
110108 CAAAATCGCA
*
110118 TTGCGATTTTCATTTCGCGTTGCGATTCTTTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
*
110151 TTGCGATTTTCATTTCGCATTGCGATTCTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
110184 TTGCGATTTTCATTTCGCGTTGCGATT
1 TTGCGATTTTCATTTCGCGTTGCGATT
110211 TTGGTTTCGC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.11, C:0.20, G:0.22, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
Found at i:112168 original size:14 final size:14
Alignment explanation
Indices: 112149--112184 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
112139 ATTGTTTAAT
112149 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
*
112163 TGATTTGTAAAAGT
1 TGATTTGTAAAAGA
112177 TGATTTGT
1 TGATTTGT
112185 GTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:112307 original size:19 final size:19
Alignment explanation
Indices: 112291--112392 Score: 151
Period size: 19 Copynumber: 5.6 Consensus size: 19
112281 AAAAATGACT
112291 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
112310 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
112329 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
112343 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
112362 ATCGCAATGCGGAAATGAAA
1 ATCGCAATGC-GAAATGAAA
112382 ATCGCAATGCG
1 ATCGCAATGCG
112393 TTTATAATTT
Statistics
Matches: 75, Mismatches: 2, Indels: 12
0.84 0.02 0.13
Matches are distributed among these distances:
14 10 0.13
15 1 0.01
16 2 0.03
17 2 0.03
18 1 0.01
19 40 0.53
20 19 0.25
ACGTcount: A:0.44, C:0.18, G:0.24, T:0.15
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:112445 original size:19 final size:19
Alignment explanation
Indices: 112421--112727 Score: 376
Period size: 19 Copynumber: 17.4 Consensus size: 19
112411 GATTATCTCG
112421 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
112440 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
112459 TTGCGA--TTC-TTTCG--
1 TTGCGATTTTCATTTCGCA
112473 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
112492 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
112511 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
112530 TTGCGATTTTAATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
112549 TTGCGA--TTC-TGTCG--
1 TTGCGATTTTCATTTCGCA
112563 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
112582 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
112601 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
112615 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
112634 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
112653 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
112667 TTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTT-CGCA
112687 TTGCGATTTTCA--T-G--
1 TTGCGATTTTCATTTCGCA
* *
112701 TTGGGATTTTCATTTCGCG
1 TTGCGATTTTCATTTCGCA
112720 TTGCGATT
1 TTGCGATT
112728 GTATTTTCCG
Statistics
Matches: 252, Mismatches: 10, Indels: 52
0.80 0.03 0.17
Matches are distributed among these distances:
14 35 0.14
16 31 0.12
17 27 0.11
18 3 0.01
19 144 0.57
20 12 0.05
ACGTcount: A:0.14, C:0.21, G:0.18, T:0.47
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:112496 original size:71 final size:71
Alignment explanation
Indices: 112421--112660 Score: 373
Period size: 71 Copynumber: 3.4 Consensus size: 71
112411 GATTATCTCG
112421 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTTTCGTTGCGATTTTCAT
1 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTTTCGTTGCGATTTTCAT
112486 TTCGCA
66 TTCGCA
*
112492 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTTTAATTTCGCATTGCGA--
1 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGA--TT-CTTTCG--TTGCGATT
*
112555 TTC-TGTCG--
61 TTCATTTCGCA
*
112563 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCAT
1 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTTTCGTTGCGATTTTCAT
112628 TTCGCA
66 TTCGCA
112634 TTGCGATTTTCATTTCGCATTGCGATT
1 TTGCGATTTTCATTTCGCATTGCGATT
112661 CTCTCGTTGC
Statistics
Matches: 154, Mismatches: 5, Indels: 20
0.86 0.03 0.11
Matches are distributed among these distances:
66 6 0.04
68 7 0.05
69 6 0.04
71 115 0.75
73 6 0.04
74 8 0.05
76 6 0.04
ACGTcount: A:0.15, C:0.21, G:0.17, T:0.47
Consensus pattern (71 bp):
TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTTTCGTTGCGATTTTCAT
TTCGCA
Found at i:112571 original size:142 final size:137
Alignment explanation
Indices: 112383--112727 Score: 516
Period size: 142 Copynumber: 2.5 Consensus size: 137
112373 GAAATGAAAA
*
112383 TCGCAATGCG-TTTATAATTTCGCATTGCGATTATCTCGTTGCGATTTTCATTTCGCATTGCGAT
1 TCGCATTGCGATTT-TAATTTCGCATTGCGATT-T-TCGTTGCGATTTTCATTTCGCATTGCGAT
*
112447 TTTCATTTCGCATTGCGATTCTTTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCAT
63 TTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCAT
*
112512 TGCGATTTTCATT
128 TGCGA--TTC-TC
112525 TCGCATTGCGATTTTAATTTCGCATTGCGATTCTGTCGTTGCGATTTTCATTTCGCATTGCGATT
1 TCGCATTGCGATTTTAATTTCGCATTGCGATT-T-TCGTTGCGATTTTCATTTCGCATTGCGATT
112590 TTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATT
64 TTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATT
112655 GCGATTCTC
129 GCGATTCTC
* * *
112664 TCG--TTGCGATTTTCATTTCCGCATTGCGATTTTCATGTTGGGATTTTCATTTCGCGTTGCGAT
1 TCGCATTGCGATTTTAATTT-CGCATTGCGATTTTC--GTTGCGATTTTCATTTCGCATTGCGAT
112727 T
63 T
112728 GTATTTTCCG
Statistics
Matches: 191, Mismatches: 8, Indels: 12
0.91 0.04 0.06
Matches are distributed among these distances:
136 2 0.01
137 15 0.08
138 38 0.20
139 4 0.02
140 3 0.02
142 126 0.66
143 3 0.02
ACGTcount: A:0.15, C:0.21, G:0.18, T:0.46
Consensus pattern (137 bp):
TCGCATTGCGATTTTAATTTCGCATTGCGATTTTCGTTGCGATTTTCATTTCGCATTGCGATTTT
CATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGC
GATTCTC
Found at i:112666 original size:52 final size:52
Alignment explanation
Indices: 112421--112699 Score: 388
Period size: 52 Copynumber: 5.2 Consensus size: 52
112411 GATTATCTCG
*
112421 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGA--TTC-TTTCG--
1 TTGCGATTTTCATTTCGCATTGCGA--TTC-TCTCG--TTGCGATTTTCATTTCGCA
*
112473 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCATTGCGA--TTC-TCTCG--TTGCGATTTTCATTTCGCA
* *
112530 TTGCGATTTTAATTTCGCATTGCGATTCTGTCGTTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCA
112582 TTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCA
112634 TTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTT-CGCA
112687 TTGCGATTTTCAT
1 TTGCGATTTTCAT
112700 GTTGGGATTT
Statistics
Matches: 217, Mismatches: 4, Indels: 11
0.94 0.02 0.05
Matches are distributed among these distances:
52 161 0.74
53 17 0.08
54 7 0.03
55 8 0.04
57 24 0.11
ACGTcount: A:0.14, C:0.22, G:0.17, T:0.47
Consensus pattern (52 bp):
TTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCA
Found at i:115238 original size:24 final size:24
Alignment explanation
Indices: 115204--115250 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
115194 CTGAAACATC
115204 ATCAAAATCCGTG-TATTGACCAAT
1 ATCAAAATCCG-GATATTGACCAAT
*
115228 ATCAAAGTCCGGATATTGACCAA
1 ATCAAAATCCGGATATTGACCAA
115251 GACCAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (24 bp):
ATCAAAATCCGGATATTGACCAAT
Found at i:115958 original size:20 final size:20
Alignment explanation
Indices: 115933--116295 Score: 448
Period size: 20 Copynumber: 18.2 Consensus size: 20
115923 TTCAGTGTGT
* * *
115933 GATTTACAGATTCTCGTTGC
1 GATTTACGGATACGCGTTGC
*
115953 GATTTACGGATTA-TCGTTGC
1 GATTTACGGA-TACGCGTTGC
* * *
115973 GATTTACAGATTCTCGTTGC
1 GATTTACGGATACGCGTTGC
*
115993 GATTTACGGATTA-TCGTTGC
1 GATTTACGGA-TACGCGTTGC
116013 GA-TTACGGATACGCGTTGC
1 GATTTACGGATACGCGTTGC
*
116032 GATTTACGGATTA-TCGTTGC
1 GATTTACGGA-TACGCGTTGC
116052 GATTTACGGATACGCGTTGC
1 GATTTACGGATACGCGTTGC
*
116072 GATTTACGGATACGCATTGC
1 GATTTACGGATACGCGTTGC
116092 GATTTACGGATACGCGTTGC
1 GATTTACGGATACGCGTTGC
*
116112 GATTTACGGATACACGTTGC
1 GATTTACGGATACGCGTTGC
*
116132 GGTTTACGGATACGCGTTGC
1 GATTTACGGATACGCGTTGC
116152 GATTTACGGATACGCGTTGC
1 GATTTACGGATACGCGTTGC
* *
116172 GATATACGGATACGCATTGC
1 GATTTACGGATACGCGTTGC
**
116192 GATTTACCCATACGCGTTGC
1 GATTTACGGATACGCGTTGC
*
116212 GATTTACGGATACACGTTGC
1 GATTTACGGATACGCGTTGC
116232 GATTTACGGATACGCGTTGC
1 GATTTACGGATACGCGTTGC
* *
116252 GATTTATGTG-TTCGCGTTGC
1 GATTTACG-GATACGCGTTGC
* ** *
116272 GATTTTCATATTCGCGTTGC
1 GATTTACGGATACGCGTTGC
116292 GATT
1 GATT
116296 ATGGAAAATC
Statistics
Matches: 303, Mismatches: 31, Indels: 18
0.86 0.09 0.05
Matches are distributed among these distances:
18 2 0.01
19 18 0.06
20 278 0.92
21 5 0.02
ACGTcount: A:0.20, C:0.19, G:0.26, T:0.34
Consensus pattern (20 bp):
GATTTACGGATACGCGTTGC
Found at i:116409 original size:18 final size:19
Alignment explanation
Indices: 116386--116433 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
116376 ATTCTGGGGA
116386 TCGCGTTGCGA-TTTTATT
1 TCGCGTTGCGATTTTTATT
116404 TCGCGTTGCGATTTTTATT
1 TCGCGTTGCGATTTTTATT
116423 TCGCGTTGCGA
1 TCGCGTTGCGA
116434 ATTTGTTGGT
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
18 11 0.38
19 18 0.62
ACGTcount: A:0.10, C:0.19, G:0.25, T:0.46
Consensus pattern (19 bp):
TCGCGTTGCGATTTTTATT
Done.