Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002467.1 Hibiscus syriacus cultivar Beakdansim tig00005046_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66470

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2505--2553
25
2.0
25
95
0
89
40
8
26
24
1.83
4959--4993
13
2.6
14
86
4
54
57
2
0
40
1.14
6480--6522
22
1.9
23
85
4
61
46
4
6
41
1.51
13949--13995
2
23.5
2
95
0
85
51
0
0
48
1.00
15468--15496
9
3.2
9
100
0
58
20
10
20
48
1.79
19720--19753
14
2.3
15
90
5
52
32
2
2
61
1.26
27148--27175
6
4.7
6
100
0
56
17
0
0
82
0.68
28608--28972
180
2.0
180
99
0
721
30
3
10
55
1.50
30835--30898
24
2.7
24
80
0
74
53
18
12
15
1.73
30853--30903
12
4.2
12
78
14
52
49
19
13
17
1.80
30919--31004
43
2.0
43
88
4
129
23
22
2
52
1.59
32328--32373
15
3.2
14
85
11
58
30
26
28
15
1.96
32355--32393
18
2.2
18
85
0
51
17
20
46
15
1.84
32366--32400
18
1.9
18
94
0
61
14
17
48
20
1.81
35915--35939
12
2.1
12
100
0
50
32
8
20
40
1.81
38772--38809
19
2.0
20
94
5
69
28
15
28
26
1.96
38777--38943
63
2.6
63
83
0
181
31
19
20
27
1.97
39485--39619
22
6.3
22
84
6
179
18
22
31
28
1.97
39485--39619
44
3.2
44
88
6
199
18
22
31
28
1.97
39507--39631
40
3.0
40
84
6
153
19
20
31
28
1.97
39556--39647
40
2.3
40
84
0
121
22
20
27
29
1.99
40732--40787
21
2.7
21
94
0
94
28
12
23
35
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43038--43072
17
2.1
17
94
0
61
54
5
0
40
1.24
47944--47992
21
2.3
21
89
0
80
53
20
4
22
1.63
49905--49955
25
2.1
25
92
3
86
62
3
11
21
1.45
50745--50806
22
2.8
23
85
4
83
56
12
11
19
1.66
63815--63955
75
1.9
76
86
4
205
48
12
12
26
1.77
65039--65105
35
2.0
32
85
8
89
26
13
8
50
1.71

Tables:   1

The End!