Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002468.1 Hibiscus syriacus cultivar Beakdansim tig00005048_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66441

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17299--17345
20
2.3
20
92
0
76
12
44
21
21
1.85
26923--26990
32
2.2
31
81
2
73
36
0
8
54
1.32
47345--47446
27
3.5
28
74
18
84
41
2
5
50
1.42
47318--47406
41
2.2
41
80
8
101
46
1
5
47
1.33
47405--47640
38
6.8
35
79
14
208
43
4
6
44
1.51
47428--47672
69
3.6
69
78
11
263
45
3
6
44
1.46
47583--47629
24
2.0
24
86
0
67
44
6
6
42
1.55
47687--47729
9
4.9
8
83
16
50
25
2
0
72
0.97
47678--47727
23
2.2
22
82
10
57
26
2
2
70
1.09
47687--47729
18
2.4
18
92
7
70
25
2
0
72
0.97
48957--49010
23
2.3
23
79
14
58
9
9
1
79
1.00
48950--49044
29
3.2
28
76
19
86
10
10
2
76
1.09
48940--49035
19
5.0
18
71
23
63
13
8
1
77
1.05
49192--49229
14
2.6
14
81
18
51
36
0
2
60
1.11
54511--55388
84
10.5
83
75
7
729
29
24
20
25
1.99
54841--55385
164
3.3
163
91
1
840
29
24
21
24
1.99
54853--55385
81
6.5
81
75
5
453
29
24
20
24
1.99
56073--56126
27
2.0
27
85
0
72
38
5
9
46
1.59
56086--56411
38
9.2
35
78
13
244
46
3
7
43
1.46
56054--56420
31
10.9
31
69
21
154
46
2
6
44
1.44
56337--56383
24
2.0
24
86
0
67
44
6
6
42
1.55
56441--56480
9
4.9
8
85
14
55
25
2
0
72
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56441--56488
16
2.9
16
87
12
62
25
4
0
70
1.04
57648--57691
17
2.5
19
82
14
58
15
6
0
77
0.97
57720--57754
16
2.1
17
89
5
54
14
5
0
80
0.89
57720--57780
17
3.5
17
78
14
54
11
9
1
77
1.07
57814--57858
15
2.9
15
80
9
54
15
6
0
77
0.96
57828--57889
20
3.3
19
78
14
58
22
6
0
70
1.09
58130--58169
19
2.0
20
86
13
57
12
5
5
77
1.09
61601--61638
15
2.5
15
86
0
58
42
5
15
36
1.70
62392--62537
73
2.0
73
100
0
292
26
17
20
35
1.95
63883--63921
2
19.5
2
100
0
78
48
0
0
51
1.00

Tables:   1

The End!