genome.fa.s247.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000247.1 Hibiscus syriacus cultivar Beakdansim tig00000440_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65210

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3353--3818	179	2.6	176	83	6	548	43	13	16	26	1.85
3353--3818	178	2.6	178	82	6	570	43	13	16	26	1.85
3747--3791	20	2.5	19	86	13	60	55	11	13	20	1.68
5534--5588	20	2.5	22	81	18	62	50	0	3	45	1.19
5870--5902	15	2.2	15	94	0	57	18	9	63	9	1.49
5985--6025	21	2.0	21	85	0	55	43	12	24	19	1.85
8992--10686	182	9.4	182	94	1	2921	41	13	17	27	1.87
8992--10686	541	3.1	546	94	1	2950	41	13	17	27	1.87
8992--10686	723	2.3	723	95	0	3045	41	13	17	27	1.87
10859--11021	87	1.9	87	93	0	281	33	13	10	42	1.78
10943--10987	23	2.0	23	90	0	72	37	13	8	40	1.76
11798--11868	33	2.2	33	89	2	108	45	16	7	30	1.75
11865--11904	21	1.9	21	94	0	71	47	7	15	30	1.72
11864--11910	21	2.2	21	84	0	67	53	6	12	27	1.63
15969--16020	21	2.5	21	96	0	95	55	25	3	15	1.57
18756--18790	18	1.9	18	94	0	61	34	8	0	57	1.29
19050--19131	23	3.6	23	91	0	128	25	25	26	21	2.00
19998--20055	23	2.5	23	71	23	59	32	17	3	46	1.65
40629--40878	20	12.6	20	74	10	219	38	25	17	19	1.93
40658--40820	76	2.2	76	97	1	310	39	23	17	19	1.92
41437--41526	20	4.8	20	71	20	70	50	21	17	11	1.77
41493--41537	19	2.4	19	92	0	72	46	26	17	8	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41555--41592	14	2.7	14	100	0	76	7	26	23	42	1.81
41583--41659	20	3.9	19	82	12	84	11	22	19	46	1.82
43674--43740	21	3.2	21	66	6	55	23	35	20	19	1.95
45085--45120	14	2.6	14	90	0	54	30	0	22	47	1.52
45222--45327	19	5.7	19	79	13	123	44	19	22	13	1.85
45331--45498	19	9.8	19	64	24	97	15	22	16	46	1.84
45337--45531	33	5.8	33	88	1	273	14	23	17	44	1.86
45392--45511	14	7.5	14	65	24	51	13	23	17	45	1.83
45503--45557	20	2.8	20	94	0	92	21	23	23	30	1.99
47926--47979	24	2.2	24	93	0	90	40	20	18	20	1.91
47926--47993	24	2.8	24	84	0	64	38	20	17	23	1.93
48839--49050	40	5.3	40	88	3	266	19	19	22	38	1.94
48839--49050	60	3.5	60	81	4	230	19	19	22	38	1.94
48839--49130	20	14.5	20	78	4	147	19	18	22	38	1.93
49561--49591	16	1.9	16	93	0	53	67	6	12	12	1.40
50143--50270	34	3.8	34	78	12	140	55	3	13	27	1.55
61652--61696	18	2.6	18	82	3	56	33	0	0	66	0.92

Tables:   1

The End!