Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002470.1 Hibiscus syriacus cultivar Beakdansim tig00005050_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65101

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3468--3608
60
2.3
60
80
4
158
39
5
22
31
1.78
8334--8384
21
2.5
21
96
3
95
3
9
41
45
1.56
12559--12625
30
2.2
31
86
2
91
40
13
16
29
1.87
16719--17284
215
2.6
216
96
1
1039
50
8
10
30
1.65
17311--17561
20
12.1
20
68
20
90
41
5
7
46
1.55
17301--17366
13
5.3
13
70
14
50
42
1
6
50
1.36
17454--17591
38
3.7
38
84
12
162
42
8
5
43
1.59
17596--17630
18
1.9
17
100
0
52
40
11
8
40
1.72
17609--17728
33
3.9
32
73
17
119
41
8
6
43
1.61
17660--17789
2
61.0
2
69
19
68
42
6
4
46
1.49
17665--17775
22
4.8
22
72
18
75
42
6
4
46
1.49
17470--17724
20
13.3
19
71
21
153
41
9
6
42
1.62
17668--17786
51
2.3
50
85
8
159
41
6
5
47
1.52
17721--17784
9
6.7
9
71
25
51
43
6
1
48
1.37
17719--17789
20
3.5
20
83
9
83
43
5
2
47
1.41
17737--17975
33
7.4
32
72
16
106
45
8
4
42
1.53
17743--17811
34
2.0
36
85
5
97
46
7
2
43
1.46
17853--17976
16
7.6
15
65
22
54
44
7
6
41
1.58
17804--18008
66
3.1
66
80
6
166
44
7
5
42
1.56
17826--18099
33
8.5
33
81
9
334
43
7
6
42
1.59
17926--18098
58
2.8
58
86
6
211
42
6
7
42
1.60
21360--21397
13
2.8
13
82
17
51
60
0
2
36
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21376--21493
19
6.5
19
70
19
74
58
1
5
33
1.32
21377--21492
37
3.2
36
70
16
114
57
1
6
34
1.33
21431--21464
14
2.4
14
90
9
52
55
2
2
38
1.30
21361--21495
71
1.9
70
91
7
220
58
1
5
34
1.29
21497--21549
27
2.0
26
82
10
63
49
3
1
45
1.31
21628--21666
16
2.4
16
87
8
53
33
17
30
17
1.94
22585--22669
42
2.0
42
86
0
116
28
21
11
38
1.88
24278--24357
29
2.6
28
76
11
70
48
7
12
31
1.68
26389--26415
2
13.5
2
100
0
54
48
0
0
51
1.00
27234--27286
23
2.4
21
70
11
52
37
1
3
56
1.28
38044--38159
60
1.9
60
81
6
137
37
7
14
40
1.75
38971--38998
14
2.0
14
100
0
56
21
42
28
7
1.79
38985--39072
20
4.2
20
83
8
104
25
31
32
10
1.89
39016--39109
33
2.8
33
90
0
125
27
26
37
8
1.85
38966--39105
10
13.0
10
70
14
82
25
30
34
9
1.87
39146--39203
14
4.4
14
75
16
70
10
25
37
25
1.88
52419--52496
37
2.1
37
83
7
95
47
1
3
47
1.28
52631--52675
18
2.5
18
80
19
58
22
20
11
46
1.81
52644--52681
20
1.9
20
88
0
58
21
21
10
47
1.80
53287--53321
15
2.4
14
90
4
52
37
0
2
60
1.12
53870--54050
62
2.9
62
78
6
204
37
16
13
32
1.88
55276--55303
2
14.0
2
100
0
56
50
0
50
0
1.00

Tables:   1

The End!