Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002471.1 Hibiscus syriacus cultivar Beakdansim tig00005051_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105334
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Found at i:314 original size:14 final size:14
Alignment explanation
Indices: 281--323 Score: 68
Period size: 14 Copynumber: 3.0 Consensus size: 14
271 GATATTTAAC
281 TGGGCGGGCGGATG
1 TGGGCGGGCGGATG
*
295 TGGGGCGGACGGATG
1 T-GGGCGGGCGGATG
310 TGGGCGGGCGGATG
1 TGGGCGGGCGGATG
324 GGAAGGCGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
14 13 0.50
15 13 0.50
ACGTcount: A:0.09, C:0.14, G:0.63, T:0.14
Consensus pattern (14 bp):
TGGGCGGGCGGATG
Found at i:14050 original size:20 final size:20
Alignment explanation
Indices: 14008--14052 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
13998 GGCTTAAGAT
**
14008 TTTAATTTTAAATTTTATGA
1 TTTAATTTTAAATTTTAAAA
*
14028 TTTAATTTTATATTTTAAAA
1 TTTAATTTTAAATTTTAAAA
14048 TTTAA
1 TTTAA
14053 AATTAAAATA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (20 bp):
TTTAATTTTAAATTTTAAAA
Found at i:14091 original size:16 final size:17
Alignment explanation
Indices: 14058--14093 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
14048 TTTAAAATTA
14058 AAATAAATTAATTGTAT
1 AAATAAATTAATTGTAT
*
14075 AAATAAATTTA-TGTAT
1 AAATAAATTAATTGTAT
14091 AAA
1 AAA
14094 AATAATAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.39
Consensus pattern (17 bp):
AAATAAATTAATTGTAT
Found at i:15577 original size:8 final size:8
Alignment explanation
Indices: 15564--15589 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
15554 ACTTGATGTA
15564 ATTTGTTT
1 ATTTGTTT
15572 ATTTGTTT
1 ATTTGTTT
15580 ATTTGTTT
1 ATTTGTTT
15588 AT
1 AT
15590 ATATATAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.15, C:0.00, G:0.12, T:0.73
Consensus pattern (8 bp):
ATTTGTTT
Found at i:18214 original size:28 final size:27
Alignment explanation
Indices: 18183--18236 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 27
18173 CTTCTCTATT
18183 TAAAATATTAT-ATATTATATATATTTAA
1 TAAAATATT-TGATATT-TATATATTTAA
* *
18211 TAAACTATTTGATATTTATATTTTTA
1 TAAAATATTTGATATTTATATATTTA
18237 TTTTTGATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 10 0.43
28 13 0.57
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.54
Consensus pattern (27 bp):
TAAAATATTTGATATTTATATATTTAA
Found at i:24052 original size:24 final size:24
Alignment explanation
Indices: 24024--24077 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
24014 GAACAAACTC
** *
24024 GTTTATAAGCTTGTTTATCAAATT
1 GTTTATAAGCTCATTTATCAAATA
* *
24048 GTTTATGAGCTCATTTATCGAATA
1 GTTTATAAGCTCATTTATCAAATA
24072 GTTTAT
1 GTTTAT
24078 TTATGTTAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.28, C:0.09, G:0.15, T:0.48
Consensus pattern (24 bp):
GTTTATAAGCTCATTTATCAAATA
Found at i:24434 original size:41 final size:40
Alignment explanation
Indices: 24387--24512 Score: 128
Period size: 41 Copynumber: 3.4 Consensus size: 40
24377 AAATAAATAA
*
24387 ACGAACACAAACACGATATTAAAAATTTAAATGAACACGAG
1 ACGAACACAAACACGATATTAAAAATTTAAAT-AACACTAG
*
24428 ACGAACACAAACAC----TT-AAAA---AAATAA-A-TAA
1 ACGAACACAAACACGATATTAAAAATTTAAATAACACTAG
24458 ACGAACACAAACACGATATTAAAAATTTAAATAAACACTAG
1 ACGAACACAAACACGATATTAAAAATTTAAAT-AACACTAG
* *
24499 CCGAACACGAACAC
1 ACGAACACAAACAC
24513 TTTAAAAAAT
Statistics
Matches: 69, Mismatches: 5, Indels: 22
0.72 0.05 0.23
Matches are distributed among these distances:
30 15 0.22
31 1 0.01
32 2 0.03
33 4 0.06
34 2 0.03
35 4 0.06
36 4 0.06
37 2 0.03
38 4 0.06
39 2 0.03
40 1 0.01
41 28 0.41
ACGTcount: A:0.56, C:0.20, G:0.09, T:0.15
Consensus pattern (40 bp):
ACGAACACAAACACGATATTAAAAATTTAAATAACACTAG
Found at i:24474 original size:71 final size:71
Alignment explanation
Indices: 24309--24568 Score: 351
Period size: 71 Copynumber: 3.6 Consensus size: 71
24299 ACAACCTCAA
** * * * *
24309 AAATAAATAAACACAAACATGATATTAAAATTTTAAATGAACATGA-ACCGAACACGAACATTTT
1 AAATAAACGAACACAAACACGATATTAAAAATTTAAATGAACACGAGA-CGAACACGAACA-CTT
*
24373 TCAAAAAT
64 TAAAAAAT
* *
24381 AAATAAACGAACACAAACACGATATTAAAAATTTAAATGAACACGAGACGAACACAAACACTTAA
1 AAATAAACGAACACAAACACGATATTAAAAATTTAAATGAACACGAGACGAACACGAACACTTTA
24446 AAAAAT
66 AAAAAT
* * *
24452 AAATAAACGAACACAAACACGATATTAAAAATTTAAATAAACACTAGCCGAACACGAACACTTTA
1 AAATAAACGAACACAAACACGATATTAAAAATTTAAATGAACACGAGACGAACACGAACACTTTA
24517 AAAAAT
66 AAAAAT
* * * *
24523 AAATAAACGAACACGAATACGATATTAAAAATTTAAAGGAATACGA
1 AAATAAACGAACACAAACACGATATTAAAAATTTAAATGAACACGA
24569 ACATTATCTT
Statistics
Matches: 167, Mismatches: 20, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
71 114 0.68
72 52 0.31
73 1 0.01
ACGTcount: A:0.57, C:0.15, G:0.08, T:0.20
Consensus pattern (71 bp):
AAATAAACGAACACAAACACGATATTAAAAATTTAAATGAACACGAGACGAACACGAACACTTTA
AAAAAT
Found at i:28266 original size:252 final size:253
Alignment explanation
Indices: 27806--28314 Score: 975
Period size: 252 Copynumber: 2.0 Consensus size: 253
27796 AGGAAAAAGC
*
27806 TAAGCTCTCCAAGGTTTTTTTAAAGTAAACTTATCGCCCAACAGTTTTACGACCTCTTCAATTTG
1 TAAGCTCTCCAAGGTTTTTTTAAAGTAAACTCATCGCCCAACAGTTTTACGACCTCTTCAATTTG
27871 CGCATTTGAGTCTCATGTTACCACTATATCATCCACATAAACCAACATGTACAAATACTGCCCTC
66 CGCATTTGAGTCTCATGTTACCACTATATCATCCACATAAACCAACATGTACAAATACTGCCCTC
27936 TAACACAACGAACAAATAAAGAAGTATATGCCTTAGACTCCTTAAATCCTATTCGAATAAAGCAC
131 TAACACAACGAACAAATAAAGAAGTATATGCCTTAGACTCCTTAAATCCTATTCGAATAAAGCAC
28001 TGTTTTAACTTGACATGCCAACTCTGAGGCCCCTATCTCAAGCCATACAAGGCCTTTT
196 TGTTTTAACTTGACATGCCAACTCTGAGGCCCCTATCTCAAGCCATACAAGGCCTTTT
28059 TAAGCTCTCCAAGG-TTTTTTAAAGTAAACTCATCGCCCAACAGTTTTACGACCTCTTCAATTTG
1 TAAGCTCTCCAAGGTTTTTTTAAAGTAAACTCATCGCCCAACAGTTTTACGACCTCTTCAATTTG
* *
28123 TGCATTTGAGTCTCCTGTTACCACTATATCATCCACATAAACCAACATGTACAAATACTGCCCTC
66 CGCATTTGAGTCTCATGTTACCACTATATCATCCACATAAACCAACATGTACAAATACTGCCCTC
*
28188 TAACACAACGAACAAATAAAGAAGTATATGCCTTAGACTCCTTAAATCCTATTCGAATCAAGCAC
131 TAACACAACGAACAAATAAAGAAGTATATGCCTTAGACTCCTTAAATCCTATTCGAATAAAGCAC
28253 TGTTTTAACTTGACATGCCAACTCTGAGGCCCCTATCTCAAGCCATACAAGGCCTTTT
196 TGTTTTAACTTGACATGCCAACTCTGAGGCCCCTATCTCAAGCCATACAAGGCCTTTT
28311 TAAG
1 TAAG
28315 TTTATATACC
Statistics
Matches: 252, Mismatches: 4, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
252 238 0.94
253 14 0.06
ACGTcount: A:0.32, C:0.26, G:0.12, T:0.29
Consensus pattern (253 bp):
TAAGCTCTCCAAGGTTTTTTTAAAGTAAACTCATCGCCCAACAGTTTTACGACCTCTTCAATTTG
CGCATTTGAGTCTCATGTTACCACTATATCATCCACATAAACCAACATGTACAAATACTGCCCTC
TAACACAACGAACAAATAAAGAAGTATATGCCTTAGACTCCTTAAATCCTATTCGAATAAAGCAC
TGTTTTAACTTGACATGCCAACTCTGAGGCCCCTATCTCAAGCCATACAAGGCCTTTT
Found at i:30765 original size:16 final size:16
Alignment explanation
Indices: 30744--30786 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
30734 ACAGCTTCTA
*
30744 AATCATTCAGTATTTG
1 AATCATTCAGCATTTG
*
30760 AATCATTCAACATTTG
1 AATCATTCAGCATTTG
30776 AATCATTCAGC
1 AATCATTCAGC
30787 GCTTAATCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (16 bp):
AATCATTCAGCATTTG
Found at i:31118 original size:21 final size:21
Alignment explanation
Indices: 31089--31141 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
31079 ATTCTGACTA
31089 TCGCATTGCGATTTTCCAAAT
1 TCGCATTGCGATTTTCCAAAT
* * *
31110 TCGCGTTGCGATTTTTCTAAT
1 TCGCATTGCGATTTTCCAAAT
*
31131 TCGCAATGCGA
1 TCGCATTGCGA
31142 ATACGTAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.38
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCAAAT
Found at i:31156 original size:20 final size:20
Alignment explanation
Indices: 31131--31183 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
31121 TTTTTCTAAT
31131 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
*
31151 TCGCAATGCGAATATGTAAA
1 TCGCAATGCGAATACGTAAA
* *
31171 GCGCAACGCGAAT
1 TCGCAATGCGAAT
31184 CTGACTATCG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.19
Consensus pattern (20 bp):
TCGCAATGCGAATACGTAAA
Found at i:31387 original size:22 final size:21
Alignment explanation
Indices: 31362--31437 Score: 80
Period size: 22 Copynumber: 3.5 Consensus size: 21
31352 CACTCTCTAA
* *
31362 GACGACATCCGTCCACATCTCC
1 GACGAAATCAGTCC-CATCTCC
31384 GACGAAATCAGTCCCCATCTCC
1 GACGAAATCAGT-CCCATCTCC
*
31406 GACGATATCAGTCTCCATCTCC
1 GACGAAATCAGTC-CCATCTCC
**
31428 GGTGAAATCA
1 GACGAAATCA
31438 TTCACGATCA
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
21 1 0.02
22 43 0.93
23 2 0.04
ACGTcount: A:0.26, C:0.37, G:0.16, T:0.21
Consensus pattern (21 bp):
GACGAAATCAGTCCCATCTCC
Found at i:31836 original size:20 final size:20
Alignment explanation
Indices: 31773--31860 Score: 79
Period size: 20 Copynumber: 4.5 Consensus size: 20
31763 GCGATTCTGT
**
31773 CGTTGCGATTTTCA-TTTCG
1 CGTTGCGATAGTCATTTTCG
** *
31792 CGTTGCGATAGTCAAATTCA
1 CGTTGCGATAGTCATTTTCG
31812 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCATTTTCG
* ** *
31832 TGTTGCGATTTTCATTTTAG
1 CGTTGCGATAGTCATTTTCG
*
31852 TGTTGCGAT
1 CGTTGCGAT
31861 TTTAAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
19 12 0.21
20 45 0.79
ACGTcount: A:0.17, C:0.17, G:0.23, T:0.43
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTTCG
Found at i:33775 original size:20 final size:20
Alignment explanation
Indices: 33750--33886 Score: 95
Period size: 20 Copynumber: 7.5 Consensus size: 20
33740 AGAATAGTTT
33750 ACTATCGCAATGCGAAAATG
1 ACTATCGCAATGCGAAAATG
* *
33770 ACTATCACAACGCGAAAATG
1 ACTATCGCAATGCGAAAATG
*
33790 ACTATCGCAA--CG-AGA-G
1 ACTATCGCAATGCGAAAATG
33806 A--ATCGCAATGCG-AAATG
1 ACTATCGCAATGCGAAAATG
** *
33823 AAAAACGCAA--C-AACAA--
1 ACTATCGCAATGCGAA-AATG
*
33839 A--ATCGCAACGCGAAAATG
1 ACTATCGCAATGCGAAAATG
33857 ACTATCGCAATGCGAAAATG
1 ACTATCGCAATGCGAAAATG
*
33877 ACTGTCGCAA
1 ACTATCGCAA
33887 CGAAAGAATC
Statistics
Matches: 94, Mismatches: 9, Indels: 28
0.72 0.07 0.21
Matches are distributed among these distances:
14 13 0.14
16 10 0.11
17 8 0.09
18 5 0.05
19 6 0.06
20 52 0.55
ACGTcount: A:0.44, C:0.23, G:0.19, T:0.15
Consensus pattern (20 bp):
ACTATCGCAATGCGAAAATG
Found at i:33899 original size:87 final size:87
Alignment explanation
Indices: 33753--33918 Score: 278
Period size: 87 Copynumber: 1.9 Consensus size: 87
33743 ATAGTTTACT
* *
33753 ATCGCAATGCGAAAATGACTATCACAACGCGAAAATGACTATCGCAACGAGAGAATCGCAATGCG
1 ATCGCAACGCGAAAATGACTATCACAACGCGAAAATGACTATCGCAACGAAAGAATCGCAATGCG
33818 AAATGAAAAACGCAACAACAAA
66 AAATGAAAAACGCAACAACAAA
* * *
33840 ATCGCAACGCGAAAATGACTATCGCAATGCGAAAATGACTGTCGCAACGAAAGAATCGCAATGCG
1 ATCGCAACGCGAAAATGACTATCACAACGCGAAAATGACTATCGCAACGAAAGAATCGCAATGCG
*
33905 AAATGAAAATCGCA
66 AAATGAAAAACGCA
33919 TTGCGATTCT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
87 73 1.00
ACGTcount: A:0.45, C:0.22, G:0.20, T:0.14
Consensus pattern (87 bp):
ATCGCAACGCGAAAATGACTATCACAACGCGAAAATGACTATCGCAACGAAAGAATCGCAATGCG
AAATGAAAAACGCAACAACAAA
Found at i:34029 original size:20 final size:20
Alignment explanation
Indices: 33931--34019 Score: 133
Period size: 20 Copynumber: 4.5 Consensus size: 20
33921 GCGATTCTCT
**
33931 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCATTTTCG
* **
33951 CATTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCATTTTCG
33971 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCATTTTCG
33991 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCATTTTCG
34011 CGTTGCGAT
1 CGTTGCGAT
34020 TTTAAGTTTC
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 65 1.00
ACGTcount: A:0.20, C:0.20, G:0.25, T:0.35
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTTCG
Found at i:34594 original size:21 final size:21
Alignment explanation
Indices: 34505--34607 Score: 91
Period size: 21 Copynumber: 4.9 Consensus size: 21
34495 TTCACCTGTA
*
34505 ATCGTTCAAGAGGCCTCC-CTT
1 ATCGTTCAAGAGGCC-CCTCTC
*
34526 ATCGTTCAAGAGGCCCCTATC
1 ATCGTTCAAGAGGCCCCTCTC
** * *
34547 ATCCCTCAAGAGTCCCCTCCC
1 ATCGTTCAAGAGGCCCCTCTC
* * *
34568 ACCGTTCAAGAGGCCACTGTC
1 ATCGTTCAAGAGGCCCCTCTC
* *
34589 ATCGTTGAAGAGGTCCCTC
1 ATCGTTCAAGAGGCCCCTC
34608 CCAACATTTT
Statistics
Matches: 62, Mismatches: 19, Indels: 2
0.75 0.23 0.02
Matches are distributed among these distances:
20 2 0.03
21 60 0.97
ACGTcount: A:0.21, C:0.36, G:0.19, T:0.23
Consensus pattern (21 bp):
ATCGTTCAAGAGGCCCCTCTC
Found at i:34600 original size:42 final size:42
Alignment explanation
Indices: 34528--34610 Score: 105
Period size: 42 Copynumber: 2.0 Consensus size: 42
34518 CCTCCCTTAT
*
34528 CGTTCAAGAGGCCCCTATCATCCCTCAAGA-GTCCCCTCCCAC
1 CGTTCAAGAGGCCACTATCATCCCTCAAGAGGT-CCCTCCCAC
* ** *
34570 CGTTCAAGAGGCCACTGTCATCGTTGAAGAGGTCCCTCCCA
1 CGTTCAAGAGGCCACTATCATCCCTCAAGAGGTCCCTCCCA
34611 ACATTTTAGA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 33 0.94
43 2 0.06
ACGTcount: A:0.22, C:0.39, G:0.19, T:0.20
Consensus pattern (42 bp):
CGTTCAAGAGGCCACTATCATCCCTCAAGAGGTCCCTCCCAC
Found at i:36216 original size:34 final size:33
Alignment explanation
Indices: 36139--36223 Score: 134
Period size: 33 Copynumber: 2.5 Consensus size: 33
36129 TCGCAACGTG
** *
36139 GAAATGACTATCGCAACGTGAGAATCGCAATGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAATGC
36172 GAAATGAAAATCGCAACGAGAGAATCGCAATGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAATGC
36205 GAAAATGAAAATCGCAACG
1 G-AAATGAAAATCGCAACG
36224 CGAAACTAAA
Statistics
Matches: 48, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
33 31 0.65
34 17 0.35
ACGTcount: A:0.44, C:0.19, G:0.24, T:0.14
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAATGC
Found at i:36219 original size:20 final size:19
Alignment explanation
Indices: 36161--36228 Score: 74
Period size: 20 Copynumber: 3.8 Consensus size: 19
36151 GCAACGTGAG
36161 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
36180 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
36194 AATCGCAATGCGAAAATGAA
1 AATCGCAATGCG-AAATGAA
*
36214 AATCGCAACGCGAAA
1 AATCGCAATGCGAAA
36229 CTAAATTCGC
Statistics
Matches: 40, Mismatches: 3, Indels: 12
0.73 0.05 0.22
Matches are distributed among these distances:
14 10 0.25
15 1 0.03
16 2 0.05
17 2 0.05
19 12 0.30
20 13 0.32
ACGTcount: A:0.47, C:0.19, G:0.22, T:0.12
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:36301 original size:20 final size:20
Alignment explanation
Indices: 36272--36365 Score: 136
Period size: 20 Copynumber: 4.7 Consensus size: 20
36262 GCGATTCTCT
*
36272 CGTTGTGATAGTCATTTCCG
1 CGTTGCGATAGTCATTTCCG
* *
36292 CGTTGCGATAGTTAATTCCG
1 CGTTGCGATAGTCATTTCCG
36312 CGTTGCGATAGTCATTTCCG
1 CGTTGCGATAGTCATTTCCG
*
36332 TGTTGCGATAGTCATATT-CG
1 CGTTGCGATAGTCAT-TTCCG
36352 CGTTGCGATAGTCA
1 CGTTGCGATAGTCA
36366 AATGAATATC
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
20 64 0.97
21 2 0.03
ACGTcount: A:0.18, C:0.20, G:0.26, T:0.36
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTCCG
Found at i:38728 original size:24 final size:24
Alignment explanation
Indices: 38701--38756 Score: 103
Period size: 24 Copynumber: 2.3 Consensus size: 24
38691 CTGTTTCATC
38701 ATCAAAATTCGGGTATTGACCAAT
1 ATCAAAATTCGGGTATTGACCAAT
*
38725 ATCAAAATTCGGGTATTGACTAAT
1 ATCAAAATTCGGGTATTGACCAAT
38749 ATCAAAAT
1 ATCAAAAT
38757 CATTACACGC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.30
Consensus pattern (24 bp):
ATCAAAATTCGGGTATTGACCAAT
Found at i:38829 original size:24 final size:24
Alignment explanation
Indices: 38795--38848 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
38785 TGAAAAAATC
38795 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* *
38819 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
38843 ATCAAA
1 ATCAAA
38849 TTTCGAAAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:39677 original size:20 final size:20
Alignment explanation
Indices: 39652--39738 Score: 147
Period size: 20 Copynumber: 4.3 Consensus size: 20
39642 AAATTCAGTA
39652 TTGCGATAGTCAGAATCGCG
1 TTGCGATAGTCAGAATCGCG
*
39672 TTGCGATAGTCAGAATCTCG
1 TTGCGATAGTCAGAATCGCG
*
39692 TTGCGATAGTCAGAATCTCG
1 TTGCGATAGTCAGAATCGCG
*
39712 TTGCGATAGTCAGATTCGCG
1 TTGCGATAGTCAGAATCGCG
39732 TTGCGAT
1 TTGCGAT
39739 TTACGTATTC
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 64 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.30
Consensus pattern (20 bp):
TTGCGATAGTCAGAATCGCG
Found at i:39748 original size:20 final size:20
Alignment explanation
Indices: 39725--39777 Score: 88
Period size: 20 Copynumber: 2.6 Consensus size: 20
39715 CGATAGTCAG
*
39725 ATTCGCGTTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
*
39745 ATTCGCATTGTGATTTACGT
1 ATTCGCATTGCGATTTACGT
39765 ATTCGCATTGCGA
1 ATTCGCATTGCGA
39778 ATTAGGAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.40
Consensus pattern (20 bp):
ATTCGCATTGCGATTTACGT
Found at i:39798 original size:21 final size:21
Alignment explanation
Indices: 39774--39819 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
39764 TATTCGCATT
39774 GCGAATTAGGAAAATCGCAAC
1 GCGAATTAGGAAAATCGCAAC
* *
39795 GCGAATTTGGAAAATCGCAAT
1 GCGAATTAGGAAAATCGCAAC
39816 GCGA
1 GCGA
39820 TAGTCAGAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.39, C:0.17, G:0.26, T:0.17
Consensus pattern (21 bp):
GCGAATTAGGAAAATCGCAAC
Found at i:40101 original size:2 final size:2
Alignment explanation
Indices: 40094--40123 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
40084 TAATAATAGA
40094 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
40124 CTTAAAATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:40866 original size:22 final size:20
Alignment explanation
Indices: 40838--40901 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 20
40828 TGAGAGGAAG
40838 AAGAAAATGAGATTTTTTTATA
1 AAGAAAATGAG--TTTTTTATA
*
40860 AAGAAAATTTAGTTTTTTATA
1 AAGAAAA-TGAGTTTTTTATA
*
40881 AAGAAAATTTAGTTTTTTATA
1 AAGAAAA-TGAGTTTTTTATA
40902 CCATCTCTTA
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
21 30 0.75
22 7 0.17
23 3 0.08
ACGTcount: A:0.44, C:0.00, G:0.11, T:0.45
Consensus pattern (20 bp):
AAGAAAATGAGTTTTTTATA
Found at i:40877 original size:21 final size:21
Alignment explanation
Indices: 40851--40901 Score: 102
Period size: 21 Copynumber: 2.4 Consensus size: 21
40841 AAAATGAGAT
40851 TTTTTTATAAAGAAAATTTAG
1 TTTTTTATAAAGAAAATTTAG
40872 TTTTTTATAAAGAAAATTTAG
1 TTTTTTATAAAGAAAATTTAG
40893 TTTTTTATA
1 TTTTTTATA
40902 CCATCTCTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (21 bp):
TTTTTTATAAAGAAAATTTAG
Found at i:41933 original size:26 final size:24
Alignment explanation
Indices: 41904--41976 Score: 96
Period size: 23 Copynumber: 3.0 Consensus size: 24
41894 TTTTAAATTA
*
41904 ATTGCTCTTTCATTTTTGACATCAAT
1 ATTGCTC-TT-ATGTTTGACATCAAT
41930 ATTGCTC-TATGTTTGACATCAAT
1 ATTGCTCTTATGTTTGACATCAAT
*
41953 ATTGTTC-TATGTTTGACATCAAT
1 ATTGCTCTTATGTTTGACATCAAT
41976 A
1 A
41977 CTAATGGTCA
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
23 37 0.82
24 1 0.02
26 7 0.16
ACGTcount: A:0.26, C:0.16, G:0.11, T:0.47
Consensus pattern (24 bp):
ATTGCTCTTATGTTTGACATCAAT
Found at i:41948 original size:23 final size:23
Alignment explanation
Indices: 41918--41976 Score: 109
Period size: 23 Copynumber: 2.6 Consensus size: 23
41908 CTCTTTCATT
41918 TTTGACATCAATATTGCTCTATG
1 TTTGACATCAATATTGCTCTATG
*
41941 TTTGACATCAATATTGTTCTATG
1 TTTGACATCAATATTGCTCTATG
41964 TTTGACATCAATA
1 TTTGACATCAATA
41977 CTAATGGTCA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.29, C:0.15, G:0.12, T:0.44
Consensus pattern (23 bp):
TTTGACATCAATATTGCTCTATG
Found at i:43392 original size:14 final size:14
Alignment explanation
Indices: 43373--43400 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
43363 AATTTTAAAT
43373 TTTTTAAAAAAAAA
1 TTTTTAAAAAAAAA
43387 TTTTTAAAAAAAAA
1 TTTTTAAAAAAAAA
43401 GTGGGTTGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
TTTTTAAAAAAAAA
Found at i:51875 original size:31 final size:29
Alignment explanation
Indices: 51840--51938 Score: 83
Period size: 31 Copynumber: 3.2 Consensus size: 29
51830 CTTTAGAATC
51840 TAAATTATTAGTTTTATTTTATTTTAATACT
1 TAAATT-TTA-TTTTATTTTATTTTAATACT
*** *
51871 TAAATTCTTATTTT-TTTTAAAATCATACT
1 TAAATT-TTATTTTATTTTATTTTAATACT
* *
51900 TAAAATTTAATTTTTATTTTATTTTTAATACA
1 T-AAATTTTA-TTTTATTTTA-TTTTAATACT
51932 TAAATTT
1 TAAATTT
51939 AAGTATTGAA
Statistics
Matches: 53, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
29 14 0.26
30 13 0.25
31 20 0.38
32 6 0.11
ACGTcount: A:0.35, C:0.05, G:0.01, T:0.59
Consensus pattern (29 bp):
TAAATTTTATTTTATTTTATTTTAATACT
Found at i:52085 original size:18 final size:17
Alignment explanation
Indices: 52046--52111 Score: 62
Period size: 18 Copynumber: 3.7 Consensus size: 17
52036 AACAACATAT
52046 ATTAAAATTAAATAAAA
1 ATTAAAATTAAATAAAA
*
52063 ATTAAACATTAAATATAA
1 ATTAAA-ATTAAATAAAA
* *
52081 TTTAAAA-AAAATTAAAAA
1 ATTAAAATTAAA-T-AAAA
52099 ATTAAAAATTAAA
1 ATT-AAAATTAAA
52112 ATATATATCA
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
16 3 0.08
17 8 0.21
18 20 0.53
19 4 0.11
20 3 0.08
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (17 bp):
ATTAAAATTAAATAAAA
Found at i:52813 original size:23 final size:23
Alignment explanation
Indices: 52787--52830 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
52777 AAACGAATGT
*
52787 TAAACGAACATGTTCGTGAACGC
1 TAAACGAACATGTTCGCGAACGC
*
52810 TAAATGAACATGTTCGCGAAC
1 TAAACGAACATGTTCGCGAAC
52831 AATAAATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.23
Consensus pattern (23 bp):
TAAACGAACATGTTCGCGAACGC
Found at i:52836 original size:23 final size:23
Alignment explanation
Indices: 52787--52837 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
52777 AAACGAATGT
* * **
52787 TAAACGAACATGTTCGTGAACGC
1 TAAATGAACATGTTCGCGAACAA
52810 TAAATGAACATGTTCGCGAACAA
1 TAAATGAACATGTTCGCGAACAA
52833 TAAAT
1 TAAAT
52838 AAATGAACAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.41, C:0.18, G:0.18, T:0.24
Consensus pattern (23 bp):
TAAATGAACATGTTCGCGAACAA
Found at i:54046 original size:33 final size:35
Alignment explanation
Indices: 53971--54035 Score: 91
Period size: 35 Copynumber: 1.9 Consensus size: 35
53961 CTTAAACGAA
*
53971 AAATAA-ATTTAAAAATAATATTATTAAAATAAAT
1 AAATAATATCTAAAAATAATATTATTAAAATAAAT
*
54005 AAATAATATCTAAATATAA-ATT-TTAAAATAA
1 AAATAATATCTAAAAATAATATTATTAAAATAA
54036 CATTAAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
33 9 0.32
34 9 0.32
35 10 0.36
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (35 bp):
AAATAATATCTAAAAATAATATTATTAAAATAAAT
Found at i:55728 original size:15 final size:15
Alignment explanation
Indices: 55724--55761 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
55714 AGGAAAAAAT
55724 AAAAAATAAAAAAGG
1 AAAAAATAAAAAAGG
**
55739 AAAAAAGGAAAAAGG
1 AAAAAATAAAAAAGG
55754 AAAAAATA
1 AAAAAATA
55762 TTTTATAATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.79, C:0.00, G:0.16, T:0.05
Consensus pattern (15 bp):
AAAAAATAAAAAAGG
Found at i:55742 original size:8 final size:8
Alignment explanation
Indices: 55710--55759 Score: 61
Period size: 7 Copynumber: 6.6 Consensus size: 8
55700 TAGGAGAAAG
55710 AAAAAGGA
1 AAAAAGGA
*
55718 AAAAA-TA
1 AAAAAGGA
*
55725 AAAAA-TA
1 AAAAAGGA
55732 AAAAAGGA
1 AAAAAGGA
55740 AAAAAGG-
1 AAAAAGGA
55747 AAAAAGGA
1 AAAAAGGA
55755 AAAAA
1 AAAAA
55760 TATTTTATAA
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
7 20 0.53
8 18 0.47
ACGTcount: A:0.80, C:0.00, G:0.16, T:0.04
Consensus pattern (8 bp):
AAAAAGGA
Found at i:55750 original size:22 final size:22
Alignment explanation
Indices: 55710--55751 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
55700 TAGGAGAAAG
*
55710 AAAAAGGAAAAAATAAAAAATA
1 AAAAAGGAAAAAAGAAAAAATA
*
55732 AAAAAGGAAAAAAGGAAAAA
1 AAAAAGGAAAAAAGAAAAAA
55752 GGAAAAAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.81, C:0.00, G:0.14, T:0.05
Consensus pattern (22 bp):
AAAAAGGAAAAAAGAAAAAATA
Found at i:58162 original size:2 final size:2
Alignment explanation
Indices: 58155--58181 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
58145 CTAAATTAAT
58155 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
58182 GTAATACTCG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:62412 original size:32 final size:33
Alignment explanation
Indices: 62371--62434 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
62361 TGCCTGATGC
*
62371 TTCCCAA-CCCCAAGTTACTGTCTCACCCATGT
1 TTCCCAACCCCCAAGCTACTGTCTCACCCATGT
* *
62403 TTCCCAACCCCCATGCTGCTGTCTCACCCATG
1 TTCCCAACCCCCAAGCTACTGTCTCACCCATG
62435 CTTCATCTCG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 7 0.25
33 21 0.75
ACGTcount: A:0.19, C:0.44, G:0.11, T:0.27
Consensus pattern (33 bp):
TTCCCAACCCCCAAGCTACTGTCTCACCCATGT
Found at i:71116 original size:22 final size:21
Alignment explanation
Indices: 71072--71116 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
71062 TCAAAACCTA
*
71072 AACTACCATCCATATTTAGGG
1 AACTACCATCCATATTTACGG
71093 AACTAACCATACCATATTT-CGG
1 AACT-ACCAT-CCATATTTACGG
71115 AA
1 AA
71117 ACAATAACGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 4 0.19
22 9 0.43
23 8 0.38
ACGTcount: A:0.38, C:0.24, G:0.11, T:0.27
Consensus pattern (21 bp):
AACTACCATCCATATTTACGG
Found at i:76144 original size:36 final size:36
Alignment explanation
Indices: 76097--76331 Score: 386
Period size: 36 Copynumber: 6.6 Consensus size: 36
76087 GTGCGCTACA
*
76097 TCCTTCCGTTCGACTTGAATCGGAAGTGCCGATGCT
1 TCCTTCCGTTCGACTTGAATCGGAAGTGCCGATGCC
*
76133 TCCTTCCGTTCGACTTGAATCGGAAGTGTCGATGCC
1 TCCTTCCGTTCGACTTGAATCGGAAGTGCCGATGCC
**
76169 TCCTTCCGTTCCTCTTGAATCGGAAGTGCCGATGCC
1 TCCTTCCGTTCGACTTGAATCGGAAGTGCCGATGCC
*
76205 TCCTT-CGTTCGACTTGAATCGGAAGTGCCGATACC
1 TCCTTCCGTTCGACTTGAATCGGAAGTGCCGATGCC
*
76240 T-CTTCCATTCGACTTGAATC-GAAGTGCCGATGCC
1 TCCTTCCGTTCGACTTGAATCGGAAGTGCCGATGCC
*
76274 TCCTTCCGTTCGACTTGAATCGGAAGTGCCGATGCT
1 TCCTTCCGTTCGACTTGAATCGGAAGTGCCGATGCC
76310 TCCTTCCGTTCGACTTGAATCG
1 TCCTTCCGTTCGACTTGAATCG
76332 AACGTGTAGA
Statistics
Matches: 184, Mismatches: 12, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.09
35 60 0.33
36 107 0.58
ACGTcount: A:0.17, C:0.29, G:0.23, T:0.31
Consensus pattern (36 bp):
TCCTTCCGTTCGACTTGAATCGGAAGTGCCGATGCC
Found at i:79781 original size:19 final size:19
Alignment explanation
Indices: 79759--79812 Score: 53
Period size: 17 Copynumber: 3.1 Consensus size: 19
79749 AAATATTAAA
79759 AATAATAATTAATATATAT
1 AATAATAATTAATATATAT
* *
79778 AATATTAA-TAA-ATTTA-
1 AATAATAATTAATATATAT
*
79794 AATTA-AATTAATATATAT
1 AATAATAATTAATATATAT
79812 A
1 A
79813 TATATATATA
Statistics
Matches: 27, Mismatches: 5, Indels: 7
0.69 0.13 0.18
Matches are distributed among these distances:
15 2 0.07
16 6 0.22
17 8 0.30
18 4 0.15
19 7 0.26
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (19 bp):
AATAATAATTAATATATAT
Found at i:79811 original size:2 final size:2
Alignment explanation
Indices: 79804--79860 Score: 62
Period size: 2 Copynumber: 29.0 Consensus size: 2
79794 AATTAAATTA
* * *
79804 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT TT AT AT TT A-
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
79845 AT TT AA AT AT AT AT AT
1 AT AT AT AT AT AT AT AT
79861 CCGGCCCGAT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
1 1 0.02
2 45 0.98
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (2 bp):
AT
Found at i:84368 original size:17 final size:16
Alignment explanation
Indices: 84348--84390 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
84338 AATCTGGAGA
84348 AACTTTCTGAGAAGAAT
1 AACTTTCTGAG-AGAAT
84365 AACTTTCTG-GAGAAT
1 AACTTTCTGAGAGAAT
*
84380 ACCCTTTCTGA
1 A-ACTTTCTGA
84391 TGCTAATGCT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
15 6 0.26
16 8 0.35
17 9 0.39
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.33
Consensus pattern (16 bp):
AACTTTCTGAGAGAAT
Found at i:84378 original size:15 final size:15
Alignment explanation
Indices: 84340--84380 Score: 50
Period size: 17 Copynumber: 2.7 Consensus size: 15
84330 CAACTGAGAA
84340 TCTGGAG-A-AACTT
1 TCTGGAGAATAACTT
84353 TCTGAGAAGAATAACTT
1 TCTG-G-AGAATAACTT
84370 TCTGGAGAATA
1 TCTGGAGAATA
84381 CCCTTTCTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
13 4 0.17
14 1 0.04
15 8 0.33
16 2 0.08
17 9 0.38
ACGTcount: A:0.37, C:0.12, G:0.22, T:0.29
Consensus pattern (15 bp):
TCTGGAGAATAACTT
Found at i:90908 original size:2 final size:2
Alignment explanation
Indices: 90901--90925 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
90891 GGTAAATCTT
90901 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
90926 TATTGAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:93534 original size:17 final size:19
Alignment explanation
Indices: 93501--93552 Score: 63
Period size: 17 Copynumber: 2.7 Consensus size: 19
93491 TATTTAGAAT
93501 TTTTTAATTATTAATAATA
1 TTTTTAATTATTAATAATA
93520 TTTTT-ATTA-TAATAATA
1 TTTTTAATTATTAATAATA
93537 TAATTTATAATTATTA
1 T--TTT-TAATTATTA
93553 TTGTTATTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
17 9 0.32
18 4 0.14
19 8 0.29
20 1 0.04
21 4 0.14
22 2 0.07
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (19 bp):
TTTTTAATTATTAATAATA
Done.