genome.fa.s2472.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002472.1 Hibiscus syriacus cultivar Beakdansim tig00005053_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77035

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15306--15344	2	19.5	2	83	0	51	43	2	5	48	1.38
37586--37628	12	3.6	12	83	0	50	23	39	0	37	1.55
37574--37628	18	3.1	18	81	5	58	23	40	0	36	1.55
41080--41132	27	2.0	27	84	0	70	26	13	13	47	1.79
44384--44419	15	2.4	15	95	0	63	36	0	16	47	1.47
44592--44690	49	2.0	50	82	5	121	47	1	0	51	1.07
44590--44702	49	2.3	47	78	13	111	48	0	0	50	1.06
44770--44832	23	2.7	23	77	5	63	47	1	1	49	1.20
44808--44845	11	3.5	11	82	10	51	52	0	0	47	1.00
44934--44977	22	2.0	23	86	4	63	54	0	0	45	0.99
44820--44981	30	5.4	30	68	17	88	50	1	0	48	1.13
44927--44990	31	2.0	31	82	14	76	53	1	0	45	1.10
51855--52263	20	20.5	20	84	5	486	35	25	18	20	1.95
53157--53181	12	2.1	12	100	0	50	72	0	28	0	0.86
55486--55811	19	18.4	19	80	15	405	47	17	20	14	1.82
55486--55811	33	9.2	34	82	13	321	47	17	20	14	1.82
55514--55833	161	2.0	157	93	3	552	46	16	21	14	1.83
55514--55833	52	6.0	52	93	4	550	46	16	21	14	1.83
55840--55941	19	5.6	19	85	12	151	14	23	17	44	1.86
56048--56084	14	2.6	14	91	0	65	45	21	0	32	1.52
56079--56151	12	6.0	12	67	20	53	57	16	1	24	1.47
56065--56137	38	1.9	38	97	0	137	53	16	1	28	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57955--58089	19	7.6	19	76	16	137	45	24	19	10	1.81
58011--58067	14	3.7	14	77	20	60	45	24	21	8	1.80
57992--58084	33	2.8	33	98	0	177	47	22	20	9	1.79
57955--58089	52	2.5	54	75	18	131	45	24	19	10	1.81
58085--58194	19	6.3	19	73	20	105	8	16	30	45	1.76
58085--58176	33	2.8	33	96	3	168	6	17	30	45	1.73
58242--58616	93	4.1	93	97	1	709	45	18	12	22	1.84
58242--58616	185	2.0	186	97	1	709	45	18	12	22	1.84
60319--60408	14	5.7	14	74	23	81	42	23	25	8	1.83
60311--60425	33	3.5	33	95	0	212	45	20	24	9	1.81
60318--60430	19	6.8	18	72	23	88	43	22	24	9	1.83
60442--60496	14	3.6	14	73	21	56	9	27	23	40	1.85
60617--60687	33	2.2	33	92	0	115	47	18	22	11	1.80
60868--60922	22	2.5	22	81	0	74	20	16	40	23	1.91
61067--61260	20	9.6	20	82	5	221	19	19	25	35	1.95
61067--61260	60	3.2	60	83	0	253	19	19	25	35	1.95
61253--61329	21	3.7	20	70	13	57	27	16	23	32	1.96
61315--61366	20	2.6	20	96	0	95	21	13	26	38	1.90

Tables:   1

The End!