genome.fa.s2473.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002473.1 Hibiscus syriacus cultivar Beakdansim tig00005054_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  133726

Tables:   1   

This is table  1  of  1  ( 96 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6823--6883	30	2.1	29	96	3	113	27	3	18	50	1.62
7691--7736	18	2.6	18	86	3	58	34	4	0	60	1.16
14573--14634	24	2.7	24	80	7	67	66	1	4	27	1.21
15136--15173	15	2.5	15	87	12	51	71	0	0	28	0.87
20853--20922	30	2.2	32	80	10	81	40	0	1	58	1.07
20907--20944	17	2.3	16	90	4	58	34	0	2	63	1.09
21071--21124	17	3.2	17	72	0	54	31	0	3	64	1.11
30012--30380	20	18.5	20	85	4	458	34	26	18	20	1.96
31054--31100	24	2.0	24	87	8	69	25	14	21	38	1.92
33601--33907	19	17.4	19	79	16	358	47	18	20	14	1.83
33629--33907	52	5.2	53	90	5	358	47	17	20	14	1.83
33668--33907	71	3.4	71	83	11	355	47	17	20	15	1.83
33601--33939	142	2.4	137	89	6	497	46	18	20	14	1.83
33936--34037	19	5.6	19	85	12	151	14	23	17	44	1.86
34144--34180	14	2.6	14	91	0	65	45	21	0	32	1.52
34175--34247	12	6.0	12	67	20	53	57	16	1	24	1.47
34161--34233	38	1.9	38	97	0	137	53	16	1	28	1.51
36105--36161	14	3.7	14	77	20	60	45	22	21	10	1.82
36086--36178	33	2.8	33	95	0	168	47	21	20	10	1.80
36049--36183	19	7.6	19	76	16	128	45	23	19	11	1.82
36179--36307	19	7.3	19	75	17	125	8	17	28	45	1.77
36179--36270	33	2.8	33	93	3	150	7	18	28	45	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36351--36727	92	4.1	92	97	2	722	45	19	12	22	1.83
38434--38496	14	4.1	14	79	18	72	41	23	26	7	1.82
38428--38509	33	2.4	34	89	6	139	45	20	24	9	1.81
38433--38514	14	4.8	18	73	24	63	42	21	25	9	1.84
38526--38580	14	3.6	14	73	21	56	9	27	23	40	1.85
38701--38771	33	2.2	33	94	0	124	47	16	23	11	1.79
38951--39005	22	2.5	22	81	0	74	20	16	40	23	1.91
39151--39344	20	9.6	20	82	5	221	19	19	25	35	1.95
39151--39344	60	3.2	60	83	0	253	19	19	25	35	1.95
39337--39413	21	3.7	20	70	13	57	27	16	23	32	1.96
39399--39450	20	2.6	20	96	0	95	21	13	26	38	1.90
40425--40499	35	2.1	35	92	0	123	33	29	28	9	1.88
40577--40651	24	3.2	24	88	1	116	36	21	17	25	1.95
40581--40657	23	3.3	23	85	3	109	36	20	18	24	1.95
40560--40673	47	2.4	47	79	5	124	40	19	14	25	1.90
41808--41843	18	2.0	18	88	0	54	30	16	0	52	1.44
43138--43177	7	5.4	7	88	11	62	25	27	35	12	1.92
43139--43177	15	2.6	15	100	0	78	25	25	35	12	1.92
43180--43228	13	3.8	13	91	0	80	16	18	46	18	1.84
43167--43202	18	2.0	18	94	0	63	11	22	47	19	1.80
43139--43180	8	5.5	8	91	8	70	23	26	35	14	1.93
45264--45338	35	2.1	35	92	0	123	33	29	28	9	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45414--45488	24	3.2	24	88	1	116	36	21	17	25	1.95
45418--45494	23	3.3	23	85	3	109	36	20	18	24	1.95
45397--45510	47	2.4	47	79	5	124	40	19	14	25	1.90
46646--46681	18	2.0	18	88	0	54	30	16	0	52	1.44
47975--48014	7	5.4	7	88	11	62	25	27	35	12	1.92
47976--48014	15	2.6	15	100	0	78	25	25	35	12	1.92
48017--48065	13	3.8	13	91	0	80	16	18	46	18	1.84
48004--48039	18	2.0	18	94	0	63	11	22	47	19	1.80
47976--48017	8	5.5	8	91	8	70	23	26	35	14	1.93
50701--50808	2	54.0	2	94	0	189	47	0	0	52	1.00
57710--57789	41	2.0	42	90	5	128	33	18	15	32	1.92
62076--62367	122	2.4	121	90	0	467	41	10	14	33	1.80
62112--62301	62	3.1	62	64	17	160	41	10	15	33	1.81
62996--63038	3	14.3	3	100	0	86	67	0	0	32	0.91
70930--70959	3	10.0	3	100	0	60	66	0	0	33	0.92
73784--73818	18	2.0	17	88	5	52	45	0	0	54	0.99
73858--73890	9	3.7	9	84	15	50	54	0	0	45	0.99
74552--74588	3	12.3	3	100	0	74	0	32	0	67	0.91
79376--79481	41	2.5	40	85	8	131	44	1	1	51	1.23
79445--79486	21	2.0	22	90	4	68	54	2	0	42	1.13
79610--79690	32	2.4	35	80	14	98	45	1	2	50	1.22
84344--84382	20	2.0	20	84	0	51	33	5	20	41	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85964--86048	37	2.4	36	80	16	97	47	0	8	44	1.33
88384--88424	20	2.0	20	95	0	73	56	17	14	12	1.68
88406--88498	33	2.8	33	86	1	114	45	23	19	11	1.83
88499--88591	32	2.8	33	85	4	125	11	19	21	47	1.81
90286--90659	94	4.0	94	95	0	624	21	12	18	47	1.81
90656--90706	21	2.5	20	78	6	59	15	15	19	49	1.80
92571--92606	14	2.6	14	95	0	63	33	0	22	44	1.53
92716--92792	33	2.3	33	93	0	127	46	22	22	9	1.79
92716--92773	19	3.3	19	72	22	63	44	20	24	10	1.82
92804--92928	19	7.4	18	66	24	85	12	23	18	46	1.82
92803--92928	33	3.8	33	95	0	225	11	23	19	46	1.82
92856--92910	14	3.6	14	73	21	56	10	23	20	45	1.82
92845--92928	17	5.1	17	67	25	63	13	22	17	46	1.83
92912--92955	20	2.3	19	84	4	52	22	22	18	36	1.95
92922--92994	20	3.6	20	67	17	60	24	19	23	32	1.97
95447--95500	24	2.2	24	93	0	90	40	20	18	20	1.91
95447--95514	24	2.8	24	84	0	64	38	20	17	23	1.93
96368--96410	21	2.0	21	86	4	59	37	16	25	20	1.93
97418--97447	15	2.0	15	100	0	60	20	0	40	40	1.52
100290--100440	79	1.9	79	84	2	205	44	9	13	33	1.75
100563--100592	2	15.0	2	100	0	60	50	0	0	50	1.00
102176--102208	16	2.1	16	88	5	50	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102548--102697	56	2.6	57	82	6	169	44	5	16	34	1.70
105116--105143	2	14.0	2	100	0	56	50	0	0	50	1.00
109010--109062	25	2.1	25	82	6	63	39	0	0	60	0.97
115033--115071	19	2.2	18	86	9	53	53	0	7	38	1.30
126117--126149	16	2.1	16	94	0	57	24	21	12	42	1.86
127123--127198	20	3.8	20	96	0	134	43	5	17	34	1.71
127361--127426	34	1.9	34	87	6	98	48	4	0	46	1.22
128771--128795	13	1.9	13	100	0	50	56	0	0	44	0.99

Tables:   1

The End!