Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002474.1 Hibiscus syriacus cultivar Beakdansim tig00005055_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82971
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.32
Found at i:6263 original size:19 final size:19
Alignment explanation
Indices: 6239--6287 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
6229 CGTTTGCATT
* *
6239 TTTTTTTTAATTTTTGTG-A
1 TTTTTTATAAATTTTG-GCA
6258 TTTTTTATAAATTTTGGCA
1 TTTTTTATAAATTTTGGCA
*
6277 TTTTTTGTAAA
1 TTTTTTATAAA
6288 AACAGTAAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
18 1 0.04
19 25 0.96
ACGTcount: A:0.22, C:0.02, G:0.10, T:0.65
Consensus pattern (19 bp):
TTTTTTATAAATTTTGGCA
Found at i:6380 original size:60 final size:61
Alignment explanation
Indices: 6313--6438 Score: 211
Period size: 61 Copynumber: 2.1 Consensus size: 61
6303 AGAAGGATTT
*
6313 GAATCTAAATTAAAATTAA-ATAAAAAG-ACCTGCAGATTAATGAACGTTGATCTTTTTGAA
1 GAATCTAAATTAAAATTAATA-AAAAAGAACCTGCAGATTAATGAACGTTGATCTTGTTGAA
*
6373 GAATCTAAATTAAAATTAATAAAAAAGAATCTGCAGATTAATGAACGTTGATCTTGTTGAA
1 GAATCTAAATTAAAATTAATAAAAAAGAACCTGCAGATTAATGAACGTTGATCTTGTTGAA
6434 GAATC
1 GAATC
6439 AAACCTAGAA
Statistics
Matches: 62, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
60 25 0.40
61 37 0.60
ACGTcount: A:0.45, C:0.10, G:0.14, T:0.31
Consensus pattern (61 bp):
GAATCTAAATTAAAATTAATAAAAAAGAACCTGCAGATTAATGAACGTTGATCTTGTTGAA
Found at i:6643 original size:59 final size:59
Alignment explanation
Indices: 6551--6671 Score: 197
Period size: 59 Copynumber: 2.1 Consensus size: 59
6541 AATAGATGGA
* *
6551 TAAGTGTCCTATCGAACCCTCCTAGTCTCAATGAAAAGACAAACTCGATAATATGGCTC
1 TAAGTGTCCTATCGAACCCTCCTAATCGCAATGAAAAGACAAACTCGATAATATGGCTC
* * *
6610 TAAGTGTCCTATTGAACCCTCTTAATCGCAATGAAAAGACAAATTCGATAATATGGCTC
1 TAAGTGTCCTATCGAACCCTCCTAATCGCAATGAAAAGACAAACTCGATAATATGGCTC
6669 TAA
1 TAA
6672 CCAACCCTCC
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
59 57 1.00
ACGTcount: A:0.36, C:0.22, G:0.15, T:0.27
Consensus pattern (59 bp):
TAAGTGTCCTATCGAACCCTCCTAATCGCAATGAAAAGACAAACTCGATAATATGGCTC
Found at i:12609 original size:15 final size:16
Alignment explanation
Indices: 12582--12611 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
12572 ATTTATTAAT
12582 TAATTATTATTTTTTC
1 TAATTATTATTTTTTC
12598 TAATTA-TATTTTTT
1 TAATTATTATTTTTT
12612 GTCTACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (16 bp):
TAATTATTATTTTTTC
Found at i:14396 original size:21 final size:21
Alignment explanation
Indices: 14370--14415 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
14360 TATGCCATCT
*
14370 CCGCAGGATTACATTCTTAGC
1 CCGCAGGATTACATTCCTAGC
* *
14391 CCGCAGGGTTATATTCCTAGC
1 CCGCAGGATTACATTCCTAGC
14412 CCGC
1 CCGC
14416 CAAGTTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.20, C:0.33, G:0.22, T:0.26
Consensus pattern (21 bp):
CCGCAGGATTACATTCCTAGC
Found at i:14941 original size:14 final size:14
Alignment explanation
Indices: 14903--14949 Score: 69
Period size: 14 Copynumber: 3.4 Consensus size: 14
14893 TTTCGTGAAT
*
14903 TATTTTTAATGTTA
1 TATTTTTAAAGTTA
*
14917 T-TTTGTAAAGTTA
1 TATTTTTAAAGTTA
14930 TATTTTTAAAGTTA
1 TATTTTTAAAGTTA
14944 TATTTT
1 TATTTT
14950 ATTCAAATTC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
13 11 0.38
14 18 0.62
ACGTcount: A:0.30, C:0.00, G:0.09, T:0.62
Consensus pattern (14 bp):
TATTTTTAAAGTTA
Found at i:14949 original size:13 final size:12
Alignment explanation
Indices: 14902--14950 Score: 53
Period size: 12 Copynumber: 3.8 Consensus size: 12
14892 GTTTCGTGAA
*
14902 TTATTTTTAATG
1 TTATTTTTAAAG
14914 TTATTTTGTAAAG
1 TTATTTT-TAAAG
14927 TTATATTTTTAAAG
1 -T-TATTTTTAAAG
14941 TTATATTTTA
1 TTAT-TTTTA
14951 TTCAAATTCA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
12 10 0.31
13 10 0.31
14 6 0.19
15 6 0.19
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.61
Consensus pattern (12 bp):
TTATTTTTAAAG
Found at i:15048 original size:19 final size:19
Alignment explanation
Indices: 15012--15049 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
15002 TATTCCAATT
*
15012 GAAATTTAAAATTGTATTC
1 GAAATTTAAAATTATATTC
*
15031 GAAATTTAAAGTTATATTC
1 GAAATTTAAAATTATATTC
15050 CAATTATAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.42, C:0.05, G:0.11, T:0.42
Consensus pattern (19 bp):
GAAATTTAAAATTATATTC
Found at i:16267 original size:138 final size:138
Alignment explanation
Indices: 15497--16256 Score: 975
Period size: 138 Copynumber: 5.5 Consensus size: 138
15487 GTTGTGACCC
* * *
15497 CGGGGACATGAGTCACATAATAGGGCAATCATAACATATTCTCTGACAAAATAATGG-AAG-GC-
1 CGGGGACATGAGTCACATAATAGGGCAATTATAACATATTCTCTGACAAAAAAATGGAAAGCACG
* *
15559 CCCCCT-AATACGCACTTTCACCACTTTGTTGCGTCCCCTCAAACATGATAGGCACCGACATGAA
66 CCCCCTGAA-ATGCACTTTCACCACTTTGTTGCGTCCCCTCAAACATGATAGGTACCGACATGAA
15623 TAGTG-GCT
130 TAGTGCGCT
* * * *
15631 CGGGGGACATGAGTCACATAATAGGGAAATTATAACATATTCTCTGAAAAAAATAATAGAAGGCA
1 C-GGGGACATGAGTCACATAATAGGGCAATTATAACATATTCTCTGACAAAAA-AATGGAAAGCA
** *
15696 CGCCCCCTGAAATGTGCTTTCACCACTTTGTTGCGTCCTCTCAAACATGATAGGTACCGACATGA
64 CGCCCCCTGAAATGCACTTTCACCACTTTGTTGCGTCCCCTCAAACATGATAGGTACCGACATGA
*
15761 ATAGTGC-CA
129 ATAGTGCGCT
* * *
15770 GGGGGACATGAGTCACATAATAGGGCAATTATAACATATTCTCTGACAAAATAAA-GG-AGGCGC
1 CGGGGACATGAGTCACATAATAGGGCAATTATAACATATTCTCTGACAAAA-AAATGGAAAGCAC
* * *
15833 TCCCCCTGAAATGCACTTTCACCACTTTATTGCGTCCCCTCAAACATGATAAGTACCGACATGAA
65 GCCCCCTGAAATGCACTTTCACCACTTTGTTGCGTCCCCTCAAACATGATAGGTACCGACATGAA
*
15898 TAGTGCCCT
130 TAGTGCGCT
*
15907 -GGGGACATGAGTCACATAATAGGGCAATTATAACATATTCTCTGA-AAAAATAAT-GAAAGAAA
1 CGGGGACATGAGTCACATAATAGGGCAATTATAACATATTCTCTGACAAAAA-AATGGAAAG-CA
* * * *** *
15969 CGACCCATGAGATGCACTTTCACCACTTTGTTATATCCCCTCAAACATGATAGGTACTGACATGA
64 CGCCCCCTGAAATGCACTTTCACCACTTTGTTGCGTCCCCTCAAACATGATAGGTACCGACATGA
16034 ATAGTGCGCT
129 ATAGTGCGCT
* * * * * * **
16044 CGAGGACATGACTCACATAATAGGGCAATTATAACATATTCTCTAATAAAATAATGGAAGGTGCG
1 CGGGGACATGAGTCACATAATAGGGCAATTATAACATATTCTCTGACAAAAAAATGGAAAGCACG
* * * * *
16109 CCCCCTGAAATGCGCTTTCACCACTTTGTTGTGTCCCCTCAAATATGATAGGTACTGACATAAAT
66 CCCCCTGAAATGCACTTTCACCACTTTGTTGCGTCCCCTCAAACATGATAGGTACCGACATGAAT
*
16174 AGTGCACT
131 AGTGCGCT
** * *
16182 CGATGACATGACTCACATAATAGGGCAATTATAACATATTCTCTGACAAAAAAAGGGAAAGCACG
1 CGGGGACATGAGTCACATAATAGGGCAATTATAACATATTCTCTGACAAAAAAATGGAAAGCACG
16247 CCCCCTGAAA
66 CCCCCTGAAA
16257 CGCGCCTTCA
Statistics
Matches: 547, Mismatches: 63, Indels: 28
0.86 0.10 0.04
Matches are distributed among these distances:
134 2 0.00
135 54 0.10
136 121 0.22
137 68 0.12
138 229 0.42
139 71 0.13
140 2 0.00
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.24
Consensus pattern (138 bp):
CGGGGACATGAGTCACATAATAGGGCAATTATAACATATTCTCTGACAAAAAAATGGAAAGCACG
CCCCCTGAAATGCACTTTCACCACTTTGTTGCGTCCCCTCAAACATGATAGGTACCGACATGAAT
AGTGCGCT
Found at i:37839 original size:21 final size:21
Alignment explanation
Indices: 37810--37862 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
37800 ATTCTGACTA
37810 TCGCATTGCGATTTCCCAAAT
1 TCGCATTGCGATTTCCCAAAT
* * *
37831 TCGCGTTGCGATTTTCCTAAT
1 TCGCATTGCGATTTCCCAAAT
*
37852 TCGCAATGCGA
1 TCGCATTGCGA
37863 ATACGTAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATTTCCCAAAT
Found at i:37884 original size:20 final size:20
Alignment explanation
Indices: 37852--37998 Score: 188
Period size: 20 Copynumber: 7.3 Consensus size: 20
37842 TTTTCCTAAT
37852 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
* * ** *
37872 TCGAAACGCGAATTTGGAAAA
1 TCGCAATGCGAA-TACGTAAA
*
37893 TCGCAATGCGATTACGTAAA
1 TCGCAATGCGAATACGTAAA
37913 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
* *
37933 TCGCAATACGATTACGTAAA
1 TCGCAATGCGAATACGTAAA
37953 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
*
37973 TCGCAATGCGAA-CCTGTAAA
1 TCGCAATGCGAATAC-GTAAA
37993 TCGCAA
1 TCGCAA
37999 CGAGATTCTG
Statistics
Matches: 108, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
19 1 0.01
20 93 0.86
21 14 0.13
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.21
Consensus pattern (20 bp):
TCGCAATGCGAATACGTAAA
Found at i:40890 original size:22 final size:22
Alignment explanation
Indices: 40844--40912 Score: 65
Period size: 22 Copynumber: 3.1 Consensus size: 22
40834 ATATATTTAT
40844 TAATATTTATAATA--ATATAATA
1 TAATATTT-TAATATTATATAA-A
40866 TAATATTTTAATATTATATAAA
1 TAATATTTTAATATTATATAAA
*
40888 TAATCA-ATT-ATATTATAATAAA
1 TAAT-ATTTTAATATTAT-ATAAA
40910 TAA
1 TAA
40913 GATATTATTT
Statistics
Matches: 42, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
21 12 0.29
22 23 0.55
23 7 0.17
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (22 bp):
TAATATTTTAATATTATATAAA
Found at i:40958 original size:27 final size:28
Alignment explanation
Indices: 40919--40993 Score: 84
Period size: 28 Copynumber: 2.7 Consensus size: 28
40909 ATAAGATATT
40919 ATTTTTAT-TTTAATAATATATAA-TAA
1 ATTTTTATATTTAATAATATATAATTAA
**
40945 ATTTTTATATTTAATAATGA-ATAATTTT
1 ATTTTTATATTTAATAAT-ATATAATTAA
*
40973 ATTTATATATTTAAATAATAT
1 ATTTTTATATTT-AATAATAT
40994 TTTAGTAAAG
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
26 8 0.20
27 13 0.32
28 14 0.34
29 6 0.15
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (28 bp):
ATTTTTATATTTAATAATATATAATTAA
Found at i:40976 original size:28 final size:27
Alignment explanation
Indices: 40895--40993 Score: 89
Period size: 27 Copynumber: 3.6 Consensus size: 27
40885 AAATAATCAA
40895 TTATATTATAATAA-ATA-AGATATTATTT
1 TTATATT-TAATAATATATA-AT-TTATTT
**
40923 TTAT-TTTAATAATATATAATAAATTT
1 TTATATTTAATAATATATAATTTATTT
40949 TTATATTTAATAATGA-ATAATTTTATTT
1 TTATATTTAATAAT-ATATAA-TTTATTT
*
40977 ATATATTTAAATAATAT
1 TTATATTT-AATAATAT
40994 TTTAGTAAAG
Statistics
Matches: 59, Mismatches: 5, Indels: 13
0.77 0.06 0.17
Matches are distributed among these distances:
26 14 0.24
27 20 0.34
28 19 0.32
29 6 0.10
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (27 bp):
TTATATTTAATAATATATAATTTATTT
Found at i:41119 original size:32 final size:32
Alignment explanation
Indices: 41082--41144 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
41072 ATATAATTTA
* *
41082 TAATATTTTAATTCACTAAAA-TATACAAATAT
1 TAATATTTTAATT-AATAAAATTATAAAAATAT
*
41114 TAATATTTTTATTAATAAAATTATAAAAATA
1 TAATATTTTAATTAATAAAATTATAAAAATA
41145 ATTTAATAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
31 6 0.22
32 21 0.78
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (32 bp):
TAATATTTTAATTAATAAAATTATAAAAATAT
Found at i:41162 original size:44 final size:44
Alignment explanation
Indices: 41114--41213 Score: 109
Period size: 41 Copynumber: 2.3 Consensus size: 44
41104 ATACAAATAT
*
41114 TAATATTTTTATTAATAAAATTATAAAAATAA-TTTAATAATAAA
1 TAATATTTTTATTAA-AAAATAATAAAAATAAGTTTAATAATAAA
* * * *
41158 TAATA-TTTTA--AAAAAATAATAATATTAAGTTTTATGATAAA
1 TAATATTTTTATTAAAAAATAATAAAAATAAGTTTAATAATAAA
41199 TAATATTATTTATTA
1 TAATATT-TTTATTA
41214 TATTTAATAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
40 13 0.28
41 17 0.37
42 1 0.02
43 9 0.20
44 5 0.11
45 1 0.02
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (44 bp):
TAATATTTTTATTAAAAAATAATAAAAATAAGTTTAATAATAAA
Found at i:41176 original size:16 final size:18
Alignment explanation
Indices: 41136--41185 Score: 61
Period size: 17 Copynumber: 2.9 Consensus size: 18
41126 TAATAAAATT
41136 ATAAA-AATAATTTAATA
1 ATAAATAATAATTTAATA
*
41153 ATAAATAATATTTTAA-A
1 ATAAATAATAATTTAATA
41170 A-AAATAATAATATTAA
1 ATAAATAATAAT-TTAA
41186 GTTTTATGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
16 9 0.31
17 11 0.38
18 9 0.31
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (18 bp):
ATAAATAATAATTTAATA
Found at i:41361 original size:20 final size:20
Alignment explanation
Indices: 41303--41352 Score: 100
Period size: 20 Copynumber: 2.5 Consensus size: 20
41293 TCATAAAACG
41303 TTTTCCAGAAATGTAATTCA
1 TTTTCCAGAAATGTAATTCA
41323 TTTTCCAGAAATGTAATTCA
1 TTTTCCAGAAATGTAATTCA
41343 TTTTCCAGAA
1 TTTTCCAGAA
41353 TTCAAATTCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.34, C:0.16, G:0.10, T:0.40
Consensus pattern (20 bp):
TTTTCCAGAAATGTAATTCA
Found at i:41387 original size:30 final size:29
Alignment explanation
Indices: 41335--41407 Score: 128
Period size: 30 Copynumber: 2.5 Consensus size: 29
41325 TTCCAGAAAT
41335 GTAATTCATTTTCCAGAATTCAAATTCCA
1 GTAATTCATTTTCCAGAATTCAAATTCCA
*
41364 GTAATTCATTTTCTAGTAATTCAAATTCCA
1 GTAATTCATTTTCCAG-AATTCAAATTCCA
41394 GTAATTCATTTTCC
1 GTAATTCATTTTCC
41408 GGAAAATCAA
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
29 15 0.37
30 26 0.63
ACGTcount: A:0.32, C:0.19, G:0.07, T:0.42
Consensus pattern (29 bp):
GTAATTCATTTTCCAGAATTCAAATTCCA
Found at i:41407 original size:15 final size:15
Alignment explanation
Indices: 41335--41407 Score: 94
Period size: 15 Copynumber: 4.9 Consensus size: 15
41325 TTCCAGAAAT
41335 GTAATTCATTTTCCA
1 GTAATTCATTTTCCA
**
41350 G-AATTCAAATTCCA
1 GTAATTCATTTTCCA
*
41364 GTAATTCATTTTCTA
1 GTAATTCATTTTCCA
**
41379 GTAATTCAAATTCCA
1 GTAATTCATTTTCCA
41394 GTAATTCATTTTCC
1 GTAATTCATTTTCC
41408 GGAAAATCAA
Statistics
Matches: 47, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
14 12 0.26
15 35 0.74
ACGTcount: A:0.32, C:0.19, G:0.07, T:0.42
Consensus pattern (15 bp):
GTAATTCATTTTCCA
Found at i:43074 original size:29 final size:29
Alignment explanation
Indices: 43038--43149 Score: 188
Period size: 29 Copynumber: 3.8 Consensus size: 29
43028 CAAACTAAAT
* *
43038 TGATGTCATTACTTACATCATTTAATTAA
1 TGATGTCATTGCTTACATCATTTAAGTAA
*
43067 AGATGTCATTGCTTACATCATTTAAGTAA
1 TGATGTCATTGCTTACATCATTTAAGTAA
43096 TGATGTCATTGCTTACATCATTTAAGTAA
1 TGATGTCATTGCTTACATCATTTAAGTAA
43125 TGATGTCATTGCTTACATCAATTTA
1 TGATGTCATTGCTTACATC-ATTTA
43150 GTTAGGTGAG
Statistics
Matches: 78, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
29 73 0.94
30 5 0.06
ACGTcount: A:0.32, C:0.14, G:0.12, T:0.42
Consensus pattern (29 bp):
TGATGTCATTGCTTACATCATTTAAGTAA
Found at i:59597 original size:41 final size:41
Alignment explanation
Indices: 59550--59628 Score: 131
Period size: 41 Copynumber: 1.9 Consensus size: 41
59540 AAATGAGCTT
* *
59550 ATATTTCCGGAAGATTTCTATGTCATTGATATGGAAAAGGA
1 ATATTTCCGGAAGATATCTATGTCATTGACATGGAAAAGGA
*
59591 ATATTTCTGGAAGATATCTATGTCATTGACATGGAAAA
1 ATATTTCCGGAAGATATCTATGTCATTGACATGGAAAA
59629 TGACCGAGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.35, C:0.10, G:0.20, T:0.34
Consensus pattern (41 bp):
ATATTTCCGGAAGATATCTATGTCATTGACATGGAAAAGGA
Found at i:59937 original size:14 final size:14
Alignment explanation
Indices: 59918--59951 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
59908 TGGACAATAT
59918 GAAAAGGATTTGAA
1 GAAAAGGATTTGAA
59932 GAAAAGGATTTGAA
1 GAAAAGGATTTGAA
59946 GAAAAG
1 GAAAAG
59952 CCTATGAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.53, C:0.00, G:0.29, T:0.18
Consensus pattern (14 bp):
GAAAAGGATTTGAA
Found at i:64295 original size:16 final size:16
Alignment explanation
Indices: 64274--64305 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
64264 AATTATTTAA
*
64274 TTAATTATTTTCTTTT
1 TTAATTATTATCTTTT
64290 TTAATTATTATCTTTT
1 TTAATTATTATCTTTT
64306 ATTTTAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.22, C:0.06, G:0.00, T:0.72
Consensus pattern (16 bp):
TTAATTATTATCTTTT
Found at i:64310 original size:19 final size:20
Alignment explanation
Indices: 64269--64312 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
64259 CTTTAAATTA
*
64269 TTTAATTAATTATTTTCTTT
1 TTTAATTAATTATTTTCTAT
64289 TTTAATT-ATTATCTTT-TAT
1 TTTAATTAATTAT-TTTCTAT
64308 TTTAA
1 TTTAA
64313 AAAACAACTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 12 0.55
20 10 0.45
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (20 bp):
TTTAATTAATTATTTTCTAT
Found at i:66463 original size:21 final size:21
Alignment explanation
Indices: 66434--66486 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
66424 ATTCTGACTA
66434 TCGCATTGCGATTTCCCAAAT
1 TCGCATTGCGATTTCCCAAAT
* * *
66455 TCGCGTTGCGATTTTCCTAAT
1 TCGCATTGCGATTTCCCAAAT
*
66476 TCGCAATGCGA
1 TCGCATTGCGA
66487 ATACGTAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATTTCCCAAAT
Found at i:66508 original size:20 final size:20
Alignment explanation
Indices: 66476--66622 Score: 188
Period size: 20 Copynumber: 7.3 Consensus size: 20
66466 TTTTCCTAAT
66476 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
* * ** *
66496 TCGAAACGCGAATTTGGAAAA
1 TCGCAATGCGAA-TACGTAAA
*
66517 TCGCAATGCGATTACGTAAA
1 TCGCAATGCGAATACGTAAA
66537 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
* *
66557 TCGCAATACGATTACGTAAA
1 TCGCAATGCGAATACGTAAA
66577 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
*
66597 TCGCAATGCGAA-CCTGTAAA
1 TCGCAATGCGAATAC-GTAAA
66617 TCGCAA
1 TCGCAA
66623 CGAGATTCTG
Statistics
Matches: 108, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
19 1 0.01
20 93 0.86
21 14 0.13
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.21
Consensus pattern (20 bp):
TCGCAATGCGAATACGTAAA
Found at i:67513 original size:24 final size:24
Alignment explanation
Indices: 67486--67539 Score: 83
Period size: 24 Copynumber: 2.2 Consensus size: 24
67476 GTATTCGAAA
67486 TTTGATCTTGGTCAATAAC-CGGAC
1 TTTGATCTTGGTCAAT-ACTCGGAC
*
67510 TTTGATCTTGGTCAATACTCGGAT
1 TTTGATCTTGGTCAATACTCGGAC
67534 TTTGAT
1 TTTGAT
67540 GATTTTTCAG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
23 2 0.07
24 26 0.93
ACGTcount: A:0.22, C:0.17, G:0.20, T:0.41
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACTCGGAC
Found at i:69392 original size:14 final size:14
Alignment explanation
Indices: 69373--69413 Score: 82
Period size: 14 Copynumber: 2.9 Consensus size: 14
69363 TCATTTGACT
69373 ATCGCAACGCGAAA
1 ATCGCAACGCGAAA
69387 ATCGCAACGCGAAA
1 ATCGCAACGCGAAA
69401 ATCGCAACGCGAA
1 ATCGCAACGCGAA
69414 TATGACTATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.41, C:0.29, G:0.22, T:0.07
Consensus pattern (14 bp):
ATCGCAACGCGAAA
Found at i:69426 original size:20 final size:20
Alignment explanation
Indices: 69401--69489 Score: 94
Period size: 20 Copynumber: 4.5 Consensus size: 20
69391 CAACGCGAAA
69401 ATCGCAACGCGAATATGACT
1 ATCGCAACGCGAATATGACT
* *
69421 ATCGCAACACGAAAATGACT
1 ATCGCAACGCGAATATGACT
69441 ATCGCAATACG-GAAT-TGACT
1 ATCGC-A-ACGCGAATATGACT
*
69461 ATCGCAACTCGGAA-ATGACT
1 ATCGCAACGC-GAATATGACT
*
69481 ATTGCAACG
1 ATCGCAACG
69490 AGAGAATCGC
Statistics
Matches: 57, Mismatches: 7, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
18 2 0.04
19 1 0.02
20 48 0.84
21 4 0.07
22 2 0.04
ACGTcount: A:0.37, C:0.24, G:0.19, T:0.20
Consensus pattern (20 bp):
ATCGCAACGCGAATATGACT
Found at i:69460 original size:40 final size:41
Alignment explanation
Indices: 69411--69487 Score: 120
Period size: 40 Copynumber: 1.9 Consensus size: 41
69401 ATCGCAACGC
69411 GAATATGACTATCGCAACACGAAAATGACTATCGCAATACG
1 GAATATGACTATCGCAACACGAAAATGACTATCGCAATACG
* * *
69452 GAAT-TGACTATCGCAACTCGGAAATGACTATTGCAA
1 GAATATGACTATCGCAACACGAAAATGACTATCGCAA
69488 CGAGAGAATC
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
40 29 0.88
41 4 0.12
ACGTcount: A:0.39, C:0.21, G:0.18, T:0.22
Consensus pattern (41 bp):
GAATATGACTATCGCAACACGAAAATGACTATCGCAATACG
Found at i:69518 original size:19 final size:19
Alignment explanation
Indices: 69494--69581 Score: 78
Period size: 19 Copynumber: 4.8 Consensus size: 19
69484 GCAACGAGAG
*
69494 AATCGCAATGTGAAATGAA
1 AATCGCAATGCGAAATGAA
*
69513 AATCGCAATGCGCAATGAA
1 AATCGCAATGCGAAATGAA
*
69532 AATCGCAA--CG-AGTG--
1 AATCGCAATGCGAAATGAA
** *
69546 AATCATAATGGGAAAATGAA
1 AATCGCAATGCG-AAATGAA
69566 AATCGCAATGCGAAAT
1 AATCGCAATGCGAAAT
69582 TAGTTTCGTG
Statistics
Matches: 53, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
14 6 0.11
16 4 0.08
17 2 0.04
18 3 0.06
19 29 0.55
20 9 0.17
ACGTcount: A:0.45, C:0.15, G:0.22, T:0.18
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:69634 original size:34 final size:34
Alignment explanation
Indices: 69591--69685 Score: 129
Period size: 33 Copynumber: 2.8 Consensus size: 34
69581 TTAGTTTCGT
69591 GTTGCGATTTTCATTTTCGCATTGCGATTCACTC
1 GTTGCGATTTTCATTTTCGCATTGCGATTCACTC
*
69625 GTTGCGATTTTCA-TTTCGCATTGCGATTCTCTC
1 GTTGCGATTTTCATTTTCGCATTGCGATTCACTC
* ** * *
69658 GTTGTGATAGTCATTTCCGCCTTGCGAT
1 GTTGCGATTTTCATTTTCGCATTGCGAT
69686 AGTCTGTTTT
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
33 29 0.54
34 25 0.46
ACGTcount: A:0.14, C:0.23, G:0.20, T:0.43
Consensus pattern (34 bp):
GTTGCGATTTTCATTTTCGCATTGCGATTCACTC
Found at i:71281 original size:42 final size:42
Alignment explanation
Indices: 71202--71294 Score: 107
Period size: 42 Copynumber: 2.2 Consensus size: 42
71192 CCTCTTCAAC
* * *
71202 GATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTTGAGG
1 GATGACAGGGGCCTCTTGAACGATGGGAGAGGACTCTTGAGG
* * **
71244 GATGATAGGGGCCTCTTGAACGATAGGG-GAGGCCTCTTGAAC
1 GATGACAGGGGCCTCTTGAACGAT-GGGAGAGGACTCTTGAGG
71286 GATGACAGG
1 GATGACAGG
71295 TGAGTCGGGC
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
42 39 0.93
43 3 0.07
ACGTcount: A:0.23, C:0.17, G:0.40, T:0.20
Consensus pattern (42 bp):
GATGACAGGGGCCTCTTGAACGATGGGAGAGGACTCTTGAGG
Found at i:71601 original size:20 final size:20
Alignment explanation
Indices: 71578--71624 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
71568 GAAACTTAAA
71578 ATCGCAACGCGAAAAAGACT
1 ATCGCAACGCGAAAAAGACT
*
71598 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAAAGACT
71618 ATCGCAA
1 ATCGCAA
71625 TGAGAGAATC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.43, C:0.26, G:0.19, T:0.13
Consensus pattern (20 bp):
ATCGCAACGCGAAAAAGACT
Found at i:71777 original size:34 final size:34
Alignment explanation
Indices: 71737--71858 Score: 145
Period size: 34 Copynumber: 3.4 Consensus size: 34
71727 GCGATTTTCA
*
71737 TTTCGCATTGCGATTCTTTCATTGCGATAGTCAA
1 TTTCGCATTGCGATTCTTTCATTGCGATAGTCAT
*
71771 ATTCGCATTGCGATAGTCATTTTCACATTGCGATAGTCAT
1 TTTCGCATTGCGAT--TC--TTT--CATTGCGATAGTCAT
* *
71811 TTTCGCATTGCGATTCTCTCGTTGCGATAGTCAT
1 TTTCGCATTGCGATTCTTTCATTGCGATAGTCAT
*
71845 TTTCGCGTTGCGAT
1 TTTCGCATTGCGAT
71859 AGTCATTTTC
Statistics
Matches: 76, Mismatches: 6, Indels: 12
0.81 0.06 0.13
Matches are distributed among these distances:
34 40 0.53
36 4 0.05
38 5 0.07
40 27 0.36
ACGTcount: A:0.19, C:0.21, G:0.20, T:0.40
Consensus pattern (34 bp):
TTTCGCATTGCGATTCTTTCATTGCGATAGTCAT
Found at i:71781 original size:20 final size:20
Alignment explanation
Indices: 71756--71881 Score: 156
Period size: 20 Copynumber: 6.6 Consensus size: 20
71746 GCGATTCTTT
**
71756 CATTGCGATAGTCAAATTCG
1 CATTGCGATAGTCATTTTCG
*
71776 CATTGCGATAGTCATTTTCA
1 CATTGCGATAGTCATTTTCG
71796 CATTGCGATAGTCATTTTCG
1 CATTGCGATAGTCATTTTCG
*
71816 CATTGCGAT--TC--TCTCG
1 CATTGCGATAGTCATTTTCG
71832 --TTGCGATAGTCATTTTCG
1 CATTGCGATAGTCATTTTCG
*
71850 CGTTGCGATAGTCATTTTCG
1 CATTGCGATAGTCATTTTCG
*
71870 TATTGCGATAGT
1 CATTGCGATAGT
71882 AAACTATTCT
Statistics
Matches: 92, Mismatches: 8, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
14 7 0.08
16 6 0.07
18 6 0.07
20 73 0.79
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.39
Consensus pattern (20 bp):
CATTGCGATAGTCATTTTCG
Found at i:71816 original size:74 final size:74
Alignment explanation
Indices: 71737--71881 Score: 227
Period size: 74 Copynumber: 2.0 Consensus size: 74
71727 GCGATTTTCA
*
71737 TTTCGCATTGCGATTCTTTCATTGCGATAGTCAAATTCGCATTGCGATAGTCATTTTCACATTGC
1 TTTCGCATTGCGATTCTCTCATTGCGATAGTCAAATTCGCATTGCGATAGTCATTTTCACATTGC
71802 GATAGTCAT
66 GATAGTCAT
* ** * **
71811 TTTCGCATTGCGATTCTCTCGTTGCGATAGTCATTTTCGCGTTGCGATAGTCATTTTCGTATTGC
1 TTTCGCATTGCGATTCTCTCATTGCGATAGTCAAATTCGCATTGCGATAGTCATTTTCACATTGC
71876 GATAGT
66 GATAGT
71882 AAACTATTCT
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
74 64 1.00
ACGTcount: A:0.19, C:0.20, G:0.20, T:0.41
Consensus pattern (74 bp):
TTTCGCATTGCGATTCTCTCATTGCGATAGTCAAATTCGCATTGCGATAGTCATTTTCACATTGC
GATAGTCAT
Found at i:73812 original size:20 final size:20
Alignment explanation
Indices: 73764--73801 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
73754 CTGAAACTTT
73764 AAATCGCAACACGAAAATGA
1 AAATCGCAACACGAAAATGA
73784 AAATCGCAACACGAAAAT
1 AAATCGCAACACGAAAAT
73802 TACTATCGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.55, C:0.21, G:0.13, T:0.11
Consensus pattern (20 bp):
AAATCGCAACACGAAAATGA
Found at i:74263 original size:22 final size:22
Alignment explanation
Indices: 74202--74263 Score: 62
Period size: 18 Copynumber: 3.0 Consensus size: 22
74192 TGACCGTGAA
* *
74202 TGATTTCGCCGGAGATGGAGAC
1 TGATTTCGTCGGAGATGGGGAC
74224 TG-TTATCGTC---G-TGGGGAC
1 TGATT-TCGTCGGAGATGGGGAC
74242 TGATTTCGTCGGAGATGGGGAC
1 TGATTTCGTCGGAGATGGGGAC
74264 GGATGTCGCC
Statistics
Matches: 32, Mismatches: 2, Indels: 12
0.70 0.04 0.26
Matches are distributed among these distances:
18 13 0.41
19 3 0.09
21 3 0.09
22 13 0.41
ACGTcount: A:0.18, C:0.16, G:0.39, T:0.27
Consensus pattern (22 bp):
TGATTTCGTCGGAGATGGGGAC
Found at i:74487 original size:20 final size:20
Alignment explanation
Indices: 74441--74612 Score: 213
Period size: 20 Copynumber: 8.6 Consensus size: 20
74431 GCTATGTAAA
74441 TCGCATTGCGATATT-CAG-AT
1 TCGCATTGCGAT-TTAC-GTAT
*
74461 TTGCATTGCGATTTACGTAT
1 TCGCATTGCGATTTACGTAT
* *
74481 TCACATTGCGATTTACGTAA
1 TCGCATTGCGATTTACGTAT
*
74501 TCGCATTGCGATTTACGTAA
1 TCGCATTGCGATTTACGTAT
74521 TCGCATTGCGATTTACGTAT
1 TCGCATTGCGATTTACGTAT
*
74541 TCGCATTGCGATTTACGTAA
1 TCGCATTGCGATTTACGTAT
* * **
74561 TCGCATTGTGATTTTCCAAAT
1 TCGCATTGCGA-TTTACGTAT
*
74582 TCGCGTTGCGATTTACGTAT
1 TCGCATTGCGATTTACGTAT
74602 TCGCATTGCGA
1 TCGCATTGCGA
74613 ATTAGGAAAA
Statistics
Matches: 131, Mismatches: 18, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
19 3 0.02
20 114 0.87
21 14 0.11
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.38
Consensus pattern (20 bp):
TCGCATTGCGATTTACGTAT
Found at i:74512 original size:60 final size:59
Alignment explanation
Indices: 74439--74612 Score: 242
Period size: 60 Copynumber: 2.9 Consensus size: 59
74429 GCGCTATGTA
* *
74439 AATCGCATTGCGATATTCAGATTTGCATTGCGATTTACGTATTCACATTGCGATTTACGT
1 AATCGCATTGCGAT-TTCAGATTCGCATTGCGATTTACGTATTCGCATTGCGATTTACGT
*
74499 AATCGCATTGCGATTT-ACGTAATCGCATTGCGATTTACGTATTCGCATTGCGATTTACGT
1 AATCGCATTGCGATTTCA-G-ATTCGCATTGCGATTTACGTATTCGCATTGCGATTTACGT
* * *
74559 AATCGCATTGTGATTTTCCAAATTCGCGTTGCGATTTACGTATTCGCATTGCGA
1 AATCGCATTGCGA-TTT-CAGATTCGCATTGCGATTTACGTATTCGCATTGCGA
74613 ATTAGGAAAA
Statistics
Matches: 102, Mismatches: 7, Indels: 9
0.86 0.06 0.08
Matches are distributed among these distances:
58 1 0.01
59 3 0.03
60 63 0.62
61 34 0.33
63 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.37
Consensus pattern (59 bp):
AATCGCATTGCGATTTCAGATTCGCATTGCGATTTACGTATTCGCATTGCGATTTACGT
Found at i:74633 original size:21 final size:21
Alignment explanation
Indices: 74609--74654 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
74599 TATTCGCATT
74609 GCGAATTAGGAAAATCGCAAC
1 GCGAATTAGGAAAATCGCAAC
* * *
74630 GCGAATTTGGGAAATCGCAAT
1 GCGAATTAGGAAAATCGCAAC
74651 GCGA
1 GCGA
74655 TAGTCAGAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.37, C:0.17, G:0.28, T:0.17
Consensus pattern (21 bp):
GCGAATTAGGAAAATCGCAAC
Found at i:77942 original size:21 final size:21
Alignment explanation
Indices: 77918--77959 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
77908 CCATCTCCGT
*
77918 AGGGTTGCATTCCTAGCCCGC
1 AGGGTTACATTCCTAGCCCGC
*
77939 AGGGTTATATTCCTAGCCCGC
1 AGGGTTACATTCCTAGCCCGC
77960 CAAGTTTCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.17, C:0.31, G:0.26, T:0.26
Consensus pattern (21 bp):
AGGGTTACATTCCTAGCCCGC
Found at i:78492 original size:13 final size:13
Alignment explanation
Indices: 78449--78494 Score: 65
Period size: 13 Copynumber: 3.5 Consensus size: 13
78439 TCGTGAATTA
*
78449 TTTTTAATGTTAT
1 TTTTTAAAGTTAT
*
78462 TTTGTAAAGTTAT
1 TTTTTAAAGTTAT
78475 ATTTTTAAAGTTAT
1 -TTTTTAAAGTTAT
78489 TTTTTA
1 TTTTTA
78495 TTCAAATTCA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
13 17 0.59
14 12 0.41
ACGTcount: A:0.28, C:0.00, G:0.09, T:0.63
Consensus pattern (13 bp):
TTTTTAAAGTTAT
Found at i:78593 original size:19 final size:19
Alignment explanation
Indices: 78557--78594 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
78547 TATTCCAATT
*
78557 GAAATTTAAAATTGTATTC
1 GAAATTTAAAATTATATTC
*
78576 GAAATTTAAAGTTATATTC
1 GAAATTTAAAATTATATTC
78595 CAATTATAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.42, C:0.05, G:0.11, T:0.42
Consensus pattern (19 bp):
GAAATTTAAAATTATATTC
Found at i:80204 original size:18 final size:18
Alignment explanation
Indices: 80183--80217 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
80173 ATTGTATAAA
80183 ATCTATTAATTTGACCTC
1 ATCTATTAATTTGACCTC
80201 ATCTATTAATTTGACCT
1 ATCTATTAATTTGACCT
80218 TTAACCACCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.29, C:0.20, G:0.06, T:0.46
Consensus pattern (18 bp):
ATCTATTAATTTGACCTC
Found at i:81787 original size:36 final size:35
Alignment explanation
Indices: 81723--81809 Score: 88
Period size: 36 Copynumber: 2.4 Consensus size: 35
81713 ATATCTTATA
* *
81723 TGAACAAGAAAAGTATTGATTTGAAATGATCTG-AC
1 TGAA-AAGAAAAGTATTAATTTGAAATGATATGAAC
*
81758 TTCGAAAAGAAAAGTA-TAATTTTGCAATGATATGAAC
1 -T-GAAAAGAAAAGTATTAA-TTTGAAATGATATGAAC
81795 TGAAATAGAAAAGTA
1 TGAAA-AGAAAAGTA
81810 CATATCTAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
35 6 0.14
36 33 0.75
37 5 0.11
ACGTcount: A:0.47, C:0.07, G:0.18, T:0.28
Consensus pattern (35 bp):
TGAAAAGAAAAGTATTAATTTGAAATGATATGAAC
Done.