Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002475.1 Hibiscus syriacus cultivar Beakdansim tig00005057_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48540

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1413--1441
2
14.5
2
100
0
58
51
0
0
48
1.00
4726--4810
29
3.0
28
75
6
73
57
21
5
15
1.59
5265--5306
16
2.7
16
81
3
50
52
0
0
47
1.00
6216--6273
21
2.7
22
74
10
59
53
0
1
44
1.10
7030--7068
16
2.4
16
100
0
78
23
25
20
30
1.98
7873--7923
23
2.2
23
82
0
57
39
23
13
23
1.91
10678--11005
46
7.0
46
80
9
315
45
6
23
24
1.75
10678--11005
93
3.5
93
77
8
335
45
6
23
24
1.75
10724--10983
95
2.8
93
80
9
294
46
6
23
24
1.74
11235--11483
93
2.7
93
80
9
251
26
3
29
40
1.73
11813--12196
2
190.0
2
62
24
62
44
4
5
45
1.45
12007--12163
11
13.2
11
72
18
95
43
1
7
47
1.41
11988--12173
83
2.3
79
87
7
250
44
2
6
46
1.43
12041--12172
50
2.6
51
86
8
182
43
2
6
47
1.40
13552--13712
65
2.5
64
87
7
229
34
21
15
28
1.94
22161--22321
65
2.5
65
88
5
238
32
21
17
27
1.96
22161--22339
65
2.8
66
84
7
235
31
22
17
27
1.97
24279--24328
23
2.1
23
85
7
64
28
14
24
34
1.93
31508--31540
17
1.9
17
88
11
50
63
0
3
33
1.10
31613--31648
17
2.2
16
95
5
63
44
2
0
52
1.15
32533--32594
24
2.6
24
97
0
115
1
38
6
53
1.37
33573--33614
20
2.1
20
90
0
66
21
11
11
54
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37566--37603
20
1.9
20
94
0
67
47
0
5
47
1.24
38291--38319
2
14.5
2
100
0
58
51
0
0
48
1.00
39139--39177
17
2.4
17
95
4
71
43
0
5
51
1.24
39209--39284
18
4.1
18
73
20
59
51
0
1
47
1.09
39237--39282
16
2.9
16
84
9
60
54
0
0
45
0.99
39204--39302
38
2.6
39
85
9
125
50
0
1
48
1.07
39276--39307
15
2.1
15
94
0
55
46
3
0
50
1.17
39315--39346
7
4.6
7
100
0
64
31
0
12
56
1.37
39308--39355
21
2.3
21
81
0
60
35
0
10
54
1.35
39416--39477
14
4.4
14
72
11
54
41
3
8
46
1.49
39418--39508
43
2.2
40
88
7
128
45
4
6
43
1.50
39488--39538
15
3.3
15
71
15
50
50
3
3
41
1.39
39520--39622
22
4.8
22
75
11
88
48
8
5
36
1.58
39549--39601
21
2.5
21
87
0
79
47
5
7
39
1.56
39547--39638
21
4.3
20
72
14
78
47
7
6
38
1.58
39644--39736
20
4.8
19
69
25
52
44
3
8
44
1.51
39632--39769
59
2.4
55
82
7
177
42
6
8
42
1.61
39685--39725
15
2.6
16
88
7
57
41
2
9
46
1.50
39632--39764
57
2.3
57
83
5
171
43
6
8
41
1.61
39820--39859
7
5.7
7
82
11
55
17
0
37
45
1.49
39843--39928
35
2.5
36
81
7
106
22
0
25
52
1.47
40278--40430
2
77.0
2
73
15
122
45
4
2
47
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40380--40420
21
2.0
21
85
9
57
41
4
4
48
1.46
40847--40878
15
2.1
15
94
0
55
40
3
6
50
1.43
43227--43297
2
35.5
2
83
5
90
47
0
1
50
1.09
45278--45324
20
2.5
18
86
10
67
19
25
0
55
1.43

Tables:   1

The End!