genome.fa.s2477.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002477.1 Hibiscus syriacus cultivar Beakdansim tig00005060_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56880

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
242--277	18	2.0	18	100	0	72	27	22	16	33	1.95
5583--5614	13	2.4	14	90	10	50	68	0	6	25	1.12
6717--6755	18	2.2	18	95	4	71	74	0	0	25	0.82
6725--6764	18	2.3	18	86	4	55	77	0	2	20	0.88
14277--14359	31	2.6	31	84	1	94	43	10	8	37	1.70
15376--15678	164	1.9	163	85	4	423	27	19	18	34	1.96
15413--15692	42	6.8	41	69	14	159	27	21	18	32	1.96
25349--25378	15	1.9	16	93	6	53	50	3	0	46	1.18
25379--25445	29	2.3	29	89	0	98	37	4	0	58	1.19
25400--25472	29	2.4	29	84	8	85	43	4	0	52	1.20
25477--25511	18	1.9	18	88	0	52	42	11	2	42	1.55
25611--25737	59	2.2	59	87	8	179	44	0	8	45	1.40
25664--25706	14	3.1	14	79	0	59	46	0	2	51	1.13
25644--25737	30	3.2	30	74	8	111	46	0	8	44	1.33
25645--25739	31	3.2	31	76	7	115	46	0	8	45	1.33
25657--25751	31	3.2	31	73	8	99	51	0	6	42	1.27
25756--25817	30	2.1	30	84	6	81	59	1	8	30	1.36
26073--26101	10	2.7	11	89	10	51	62	0	0	37	0.96
26120--26198	12	5.9	12	72	21	59	27	24	25	22	2.00
26130--26216	16	5.9	16	73	20	91	28	26	22	21	1.99
26120--26214	28	3.4	28	98	0	181	28	25	24	22	1.99
27767--27814	25	1.9	25	86	0	69	39	0	2	58	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27781--27818	19	2.1	19	90	5	60	42	0	0	57	0.98
28113--28152	9	4.4	9	100	0	80	42	12	0	45	1.42
28931--28981	3	17.3	3	95	4	95	64	0	0	35	0.94
31504--31553	2	25.0	2	100	0	100	50	0	0	50	1.00
31555--31604	23	2.2	23	92	3	84	44	12	10	34	1.75
36954--37003	20	2.5	19	81	12	57	28	16	26	30	1.96
37678--37750	23	3.2	23	84	1	94	38	23	23	15	1.92
39193--39238	19	2.4	19	92	0	74	45	15	19	19	1.85
39202--39240	19	2.1	19	100	0	78	43	15	20	20	1.88
40459--40497	19	2.1	19	85	9	53	23	35	10	30	1.88
47988--48031	19	2.3	19	96	0	79	47	13	20	18	1.82
48675--48772	37	2.6	37	90	0	151	26	16	18	38	1.91
49427--49468	21	2.0	21	85	0	57	30	16	23	28	1.96
49789--49831	10	4.0	10	80	14	50	48	20	0	30	1.50
52556--52587	16	2.0	16	100	0	64	50	18	6	25	1.70
55187--55244	21	2.8	20	76	7	62	27	29	24	18	1.98

Tables:   1

The End!