genome.fa.s2478.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002478.1 Hibiscus syriacus cultivar Beakdansim tig00005063_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102211

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7741--7781	21	2.0	21	86	13	59	56	0	4	39	1.21
9233--9709	185	2.6	181	88	1	666	42	13	16	27	1.86
9434--9494	20	3.1	19	80	13	70	54	11	14	19	1.71
9629--9676	20	2.4	19	80	10	60	56	10	14	18	1.66
11900--11964	21	3.1	21	93	0	103	41	10	30	16	1.83
11998--12063	33	2.0	33	84	0	87	30	1	45	22	1.62
13855--13903	19	2.6	19	96	0	89	32	2	10	55	1.45
14137--15298	200	5.8	200	97	0	2094	35	14	18	30	1.91
14137--15317	399	3.0	400	95	0	2107	35	14	18	31	1.91
14137--15298	599	1.9	599	95	0	2092	35	14	18	30	1.91
16795--16846	18	2.9	18	85	0	59	42	3	30	23	1.72
16801--16850	3	16.7	3	82	0	64	38	4	32	26	1.75
18060--18647	183	3.2	183	97	0	1095	34	14	16	33	1.90
18523--18740	120	1.8	120	94	0	391	33	13	15	38	1.86
18529--18766	120	2.0	118	84	3	280	35	14	15	35	1.87
18951--19003	22	2.4	22	93	0	97	16	16	28	37	1.91
19114--19150	6	6.5	6	96	3	60	29	54	16	0	1.43
19753--19823	22	3.4	21	73	11	74	36	23	19	19	1.95
19736--19823	41	2.3	36	84	11	106	37	23	17	21	1.94
19753--19889	41	3.3	40	87	6	161	37	24	19	18	1.94
19815--19925	20	5.8	20	70	14	90	38	24	20	16	1.92
19855--19919	34	1.9	34	90	0	103	38	26	20	15	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20160--20406	120	2.1	120	94	0	431	31	13	16	38	1.87
20068--21177	303	3.7	303	97	0	2031	33	13	16	35	1.89
20467--20709	120	2.0	120	93	0	414	32	13	15	38	1.86
20770--21012	120	2.0	120	94	0	423	33	12	15	38	1.86
23903--23975	23	3.2	23	94	0	119	34	4	21	39	1.73
24392--24460	23	3.0	23	89	0	111	33	4	23	39	1.74
23717--25377	489	3.4	489	92	4	2806	41	7	11	39	1.69
24819--24876	22	2.6	22	97	0	107	41	10	8	39	1.70
24903--24975	23	3.2	23	88	0	110	35	5	20	38	1.76
24330--25360	511	2.0	510	95	0	1848	40	7	11	40	1.70
25451--25498	23	2.1	23	88	0	69	37	16	8	37	1.79
27303--27344	21	2.0	21	95	0	75	30	14	26	28	1.95
27935--27968	5	6.8	5	100	0	68	0	20	58	20	1.39
28437--28693	85	3.0	85	82	3	320	24	23	17	34	1.96
28437--28687	42	5.9	42	81	3	270	24	23	17	34	1.96
30643--30676	6	5.7	6	89	0	50	50	0	0	50	1.00
32711--32759	21	2.3	21	83	13	57	71	2	4	22	1.13
34066--34101	11	3.3	11	92	0	54	5	30	11	52	1.59
34070--34105	11	3.3	11	92	0	54	5	36	11	47	1.63
34863--34944	12	6.9	11	71	23	60	56	0	0	43	0.99
34875--34944	3	23.3	3	80	8	72	57	0	0	42	0.99
34863--34924	15	4.5	15	80	15	64	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34875--34944	24	2.9	24	80	18	83	57	0	0	42	0.99
34920--34949	15	2.0	15	93	0	51	50	0	3	46	1.18
34901--34960	12	4.7	14	80	15	53	55	0	5	40	1.22
35123--35568	76	5.9	76	96	1	772	36	21	19	22	1.95
36245--36300	23	2.5	22	80	5	67	35	12	14	37	1.84
37805--37877	35	2.1	34	87	2	101	34	20	10	34	1.88
38732--38944	114	1.9	114	94	0	381	32	17	14	34	1.91
48078--48150	3	24.3	3	78	8	69	56	0	0	43	0.99
48066--48154	15	6.0	14	76	13	65	55	0	0	44	0.99
48066--48107	11	3.7	11	81	15	50	54	0	0	45	0.99
51398--51429	15	2.1	15	94	0	55	25	18	9	46	1.79
58751--58793	14	3.1	14	83	16	54	86	0	11	2	0.67
58746--58794	11	4.2	11	89	7	62	81	0	16	2	0.78
59116--59149	16	2.2	16	94	5	61	32	5	5	55	1.48
60630--60829	95	2.1	95	98	0	382	37	15	16	31	1.89
61140--61814	113	5.7	114	77	13	600	38	14	21	26	1.91
61276--61919	123	5.3	124	79	8	684	39	14	20	25	1.91
61151--61919	237	3.2	236	88	4	1034	39	14	20	25	1.91
61149--61909	123	6.4	118	77	9	624	38	14	20	26	1.91
62057--62119	3	20.0	3	74	9	54	39	1	0	58	1.07
64479--64507	2	15.0	2	92	7	51	48	0	0	51	1.00
65128--65178	20	2.5	20	93	0	84	47	9	21	21	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65875--65924	23	2.2	23	96	0	91	12	14	14	60	1.60
66934--66993	27	2.3	26	85	5	84	15	1	15	68	1.29
80752--80850	28	3.3	29	80	10	87	25	3	8	63	1.36
80774--80845	29	2.4	30	78	17	78	25	4	6	63	1.37
81647--81705	24	2.5	24	94	0	100	33	6	3	55	1.43
87955--88076	63	2.0	62	82	7	151	45	4	5	43	1.49
88221--88367	79	1.9	79	89	0	231	29	14	16	39	1.89
89685--89808	65	1.9	63	85	6	169	45	4	4	45	1.43
92384--92414	12	2.6	12	89	0	53	51	0	0	48	1.00
92397--92697	22	13.7	20	80	7	165	42	0	9	46	1.42
92398--92697	44	6.8	44	90	1	406	42	0	10	47	1.42
92395--92697	66	4.6	66	86	2	428	42	0	9	46	1.42
96437--96478	22	1.9	22	90	0	66	33	26	14	26	1.94

Tables:   1

The End!