genome.fa.s2479.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002479.1 Hibiscus syriacus cultivar Beakdansim tig00005064_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87899

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1041--1165	8	14.9	8	71	17	60	76	0	8	14	1.00
1076--1180	11	9.4	11	70	20	51	75	0	8	16	1.04
1075--1162	11	7.6	11	72	17	54	77	0	7	14	0.99
1032--1162	60	2.2	59	81	9	151	76	0	9	14	1.02
1060--1178	16	7.4	16	71	19	61	75	0	9	15	1.03
1042--1187	80	1.8	78	81	11	181	74	0	8	15	1.09
1032--1152	36	3.4	34	77	15	102	76	0	9	14	1.03
1042--1151	27	4.1	26	75	18	86	76	0	10	13	1.02
1042--1162	28	4.2	28	71	17	90	76	0	9	14	1.00
1032--1165	19	6.8	19	71	21	89	76	0	8	14	1.02
1214--1267	14	3.5	15	80	16	58	77	0	1	20	0.86
1223--1269	18	2.6	18	83	6	60	76	0	2	21	0.89
1298--1339	20	2.0	20	86	4	57	69	0	2	28	1.01
1473--1514	3	13.7	3	85	14	59	64	0	0	35	0.94
1473--1514	20	2.1	20	91	8	68	64	0	0	35	0.94
2366--2447	22	3.7	21	74	11	67	70	1	9	18	1.21
16255--16304	3	17.3	3	76	15	52	62	0	2	36	1.07
16255--16304	15	3.2	16	83	13	61	62	0	2	36	1.07
19367--19442	31	2.5	30	78	4	80	40	13	7	38	1.73
20471--20511	20	2.0	20	90	0	64	51	0	0	48	1.00
20491--20540	14	3.4	14	78	15	57	46	0	0	54	1.00
29920--30038	16	6.3	19	72	18	72	63	0	4	31	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29923--30055	19	7.4	17	72	21	87	64	0	4	30	1.13
30648--30739	37	2.5	37	85	0	112	31	13	14	41	1.83
31076--32244	106	11.0	106	92	0	1838	23	18	24	34	1.96
32621--32656	18	2.0	18	88	0	54	44	30	5	19	1.73
33069--33123	22	2.5	22	96	0	101	25	12	25	36	1.91
33722--33793	15	4.5	15	76	15	56	2	9	9	77	1.08
33722--33782	17	3.3	18	78	15	54	3	8	8	80	1.01
33717--33773	14	3.9	14	80	15	55	1	10	7	80	0.96
37035--37072	19	2.0	20	89	5	60	68	0	23	7	1.16
38328--38454	22	5.8	21	70	22	77	65	0	3	31	1.08
38356--38588	6	38.8	6	71	19	53	60	1	3	34	1.22
38408--38449	3	14.3	3	85	14	61	69	0	0	30	0.89
38415--38465	22	2.3	21	83	12	66	72	0	1	25	0.95
38342--38478	30	4.8	28	69	26	83	64	0	2	31	1.13
38529--38587	2	29.5	2	100	0	118	50	0	0	49	1.00
38642--38683	2	21.5	2	95	4	77	52	0	0	47	1.00
39900--39958	2	29.5	2	96	0	109	0	47	1	50	1.11
40310--40381	17	4.1	17	71	7	54	52	1	1	44	1.18
45190--45253	31	2.1	31	90	0	101	28	10	10	50	1.71
45895--45929	3	11.7	3	100	0	70	0	34	0	65	0.93
46607--46651	23	2.0	23	90	0	72	24	26	26	22	2.00
46629--46933	149	2.0	149	96	0	556	35	19	16	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48609--48653	21	2.1	21	87	0	63	15	24	28	31	1.96
55473--55505	14	2.4	14	94	0	57	21	45	18	15	1.85
55885--55937	23	2.3	23	78	18	56	49	5	3	41	1.44
57248--57274	14	1.9	14	100	0	54	22	37	29	11	1.89
57330--57434	29	3.6	29	85	0	129	26	25	33	14	1.94
62822--62940	59	2.0	59	83	3	150	42	9	21	26	1.82
63032--63187	31	5.0	31	86	1	206	23	16	21	39	1.92
63840--63878	12	3.0	13	81	11	53	25	10	20	43	1.83
63859--63906	21	2.4	21	86	6	64	22	18	12	45	1.83
64077--65080	137	7.4	137	85	2	1277	23	18	24	33	1.96
64080--65080	408	2.4	409	86	3	1363	23	18	23	34	1.96
65082--65128	20	2.4	21	86	13	73	34	0	21	44	1.52
66117--66206	42	2.1	42	85	4	119	23	17	33	25	1.96
66779--66814	17	2.1	17	90	10	56	52	5	0	41	1.24
67943--67989	25	1.9	24	87	12	69	61	0	0	38	0.96
68007--68041	13	2.5	15	86	13	56	54	0	0	45	0.99
68009--68040	14	2.4	14	94	5	57	53	0	0	46	1.00
72451--72485	9	3.9	9	92	0	52	34	20	34	11	1.88
72460--72498	9	4.3	9	86	0	51	30	12	35	20	1.90
72454--72490	12	3.1	12	92	0	56	32	16	35	16	1.91
72755--72839	35	2.5	33	78	14	91	27	8	10	54	1.63
77793--77839	24	2.0	24	86	0	67	46	2	0	51	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78951--79381	221	2.0	213	87	5	623	34	11	6	47	1.66
79418--79531	39	2.9	40	71	16	103	42	15	4	37	1.67
81434--81498	23	2.8	23	85	0	94	36	21	20	21	1.95
84592--84631	21	1.9	21	84	0	53	17	15	35	32	1.91
84708--84749	21	2.0	21	85	0	57	30	23	16	28	1.96
85540--85589	22	2.2	23	79	10	59	16	16	14	54	1.72
86576--86621	18	2.4	19	85	10	67	69	0	0	30	0.89
86588--86626	18	2.2	17	86	13	53	66	0	0	33	0.92
86794--86826	15	2.1	16	88	5	50	39	3	0	57	1.14

Tables:   1

The End!