genome.fa.s248.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000248.1 Hibiscus syriacus cultivar Beakdansim tig00000443_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79089

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6815--6889	29	2.7	27	74	10	69	44	16	16	24	1.86
6929--7026	49	2.0	49	100	0	196	32	10	14	42	1.79
11429--11454	2	13.0	2	100	0	52	50	0	0	50	1.00
18134--18201	23	3.0	23	84	0	73	29	13	10	47	1.75
18151--18212	23	2.7	23	82	0	70	32	14	9	43	1.78
18600--18682	41	2.0	41	95	0	148	22	15	19	42	1.89
23240--23295	30	1.9	29	89	7	87	8	35	8	46	1.67
26977--27035	20	2.9	19	78	9	64	40	11	23	23	1.88
27496--27588	15	6.1	15	79	2	105	38	5	18	37	1.74
27506--27589	31	2.8	30	90	3	141	40	5	19	34	1.76
27982--28023	22	1.9	22	90	0	66	21	42	21	14	1.88
30593--30633	20	2.0	20	85	0	55	26	29	26	17	1.97
31116--31150	18	1.9	18	88	11	54	54	5	17	22	1.64
31207--31250	22	2.0	22	86	4	63	45	0	22	31	1.53
32130--32430	146	2.0	149	96	1	554	27	17	19	34	1.95
32409--32453	23	2.0	23	86	0	63	20	24	28	26	1.99
34654--34697	17	2.8	15	77	12	52	38	0	25	36	1.56
35578--35622	21	2.1	21	91	0	72	33	26	24	15	1.95
36202--36236	18	1.9	18	88	11	54	54	5	17	22	1.64
36293--36336	22	2.0	22	86	4	63	45	0	22	31	1.53
37218--37521	149	2.0	149	96	0	563	28	17	19	34	1.95
37500--37544	23	2.0	23	86	0	63	20	24	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42195--42248	23	2.4	22	75	9	54	24	33	16	25	1.96
42708--42748	13	3.1	13	85	3	55	36	12	7	43	1.70
42900--42939	20	2.0	20	100	0	80	30	35	10	25	1.88
45687--45757	24	3.0	24	84	12	85	22	22	25	29	1.99
51996--52049	20	2.7	20	77	11	74	27	33	14	24	1.94
53054--53107	24	2.2	24	90	0	81	22	18	18	40	1.91
55715--55755	20	2.0	20	95	0	73	21	19	26	31	1.97
55847--55895	25	2.0	25	95	0	89	26	8	18	46	1.76
56283--56319	18	2.1	18	89	0	56	32	5	10	51	1.60
56586--56672	39	2.2	39	91	0	138	47	20	14	17	1.83
60795--60826	13	2.5	13	94	0	55	78	12	6	3	1.06
61040--61085	22	2.1	22	95	0	83	21	13	43	21	1.86
61218--61302	20	4.2	20	92	0	143	20	16	24	38	1.92
66841--66878	2	19.0	2	100	0	76	50	0	0	50	1.00
67697--67778	32	2.6	32	77	11	87	42	12	2	42	1.55
71168--71283	42	2.8	42	94	0	196	17	16	19	46	1.84
71469--71529	22	2.8	23	82	7	65	47	0	0	52	1.00
71452--71536	23	3.2	26	72	23	70	51	0	0	48	1.00
71522--71571	23	2.2	22	96	3	91	54	4	0	42	1.19
71495--71597	54	1.9	52	83	11	129	49	1	0	48	1.12
71543--71646	31	3.5	29	79	18	92	47	0	0	50	1.14
73645--73670	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74195--74259	16	4.1	16	87	0	103	55	21	13	9	1.66
75316--75360	14	3.5	14	77	22	62	55	24	11	8	1.63
75315--75377	24	2.6	24	94	0	117	55	25	11	7	1.62
76699--76741	22	2.0	21	86	8	61	25	0	0	74	0.82

Tables:   1

The End!