genome.fa.s2481.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002481.1 Hibiscus syriacus cultivar Beakdansim tig00005067_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89270

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14098--14134	13	2.7	15	84	16	53	67	2	5	24	1.25
14474--14544	37	1.9	37	85	0	97	32	15	12	39	1.85
15079--15526	105	4.3	105	90	4	658	21	18	26	33	1.96
15079--15526	205	2.2	210	88	4	658	21	18	26	33	1.96
15646--15721	36	2.1	36	92	0	125	40	14	21	23	1.90
15621--15938	104	3.1	103	91	2	487	36	11	21	31	1.88
16021--16180	72	2.2	74	81	9	177	40	11	19	28	1.86
21992--22089	38	2.6	36	81	9	115	41	10	4	43	1.57
24558--24605	20	2.5	19	80	6	60	50	10	14	25	1.74
25938--25983	18	2.7	18	83	9	53	67	2	4	26	1.21
26730--26758	2	14.5	2	100	0	58	51	0	0	48	1.00
32510--32646	63	2.2	63	87	0	193	35	29	13	21	1.92
40815--40854	21	1.9	21	85	10	55	15	10	37	37	1.80
40957--41050	20	4.7	20	80	2	89	32	21	25	20	1.97
41229--41288	30	2.0	31	93	6	106	43	15	6	35	1.72
42692--42731	21	1.9	21	85	10	55	15	10	37	37	1.80
42852--42907	21	2.7	21	100	0	112	28	23	25	23	1.99
42963--43005	22	1.9	23	90	4	70	20	20	32	25	1.97
43085--43143	30	2.0	29	90	9	93	44	16	6	32	1.74
43085--43142	29	1.9	30	93	6	100	44	17	5	32	1.70
44971--45309	176	1.9	174	88	6	515	41	4	9	45	1.55
45340--45364	9	2.8	9	100	0	50	32	8	12	48	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49542--49680	63	2.2	64	81	3	156	27	19	28	25	1.99
49981--50714	212	3.5	206	87	8	1006	51	8	12	28	1.68
50800--50909	2	54.5	2	72	12	64	52	1	4	40	1.32
50805--50883	18	4.4	18	80	14	85	51	1	5	41	1.31
50804--50935	26	5.4	25	71	17	71	51	4	4	39	1.43
50862--50935	27	2.8	28	85	8	84	52	6	4	36	1.47
50875--50935	28	2.2	28	85	5	79	50	8	3	37	1.48
50984--51075	47	2.0	47	81	12	109	46	6	5	41	1.52
51081--51194	17	6.2	17	69	22	70	44	9	4	41	1.57
51222--51290	2	33.5	2	78	16	70	44	2	4	47	1.37
51369--51471	16	6.2	16	80	10	109	48	6	3	40	1.48
51449--51545	27	3.7	26	72	19	85	43	6	8	42	1.59
51531--51567	10	3.7	10	85	0	56	51	0	0	48	1.00
51526--51571	20	2.3	20	92	0	74	50	0	2	47	1.13
52227--52277	23	2.2	24	92	3	86	49	1	0	49	1.12
52548--52697	16	9.4	16	88	0	212	40	12	27	20	1.87
56064--56140	31	2.5	30	85	4	100	36	14	23	25	1.93
56237--56262	12	2.2	12	100	0	52	53	0	0	46	1.00
56656--56718	30	2.1	30	85	5	83	39	7	0	52	1.31
56964--57041	31	2.5	31	85	0	102	25	28	11	34	1.91
57691--57736	21	2.2	21	84	0	56	26	23	17	32	1.97
57697--57741	21	2.3	19	77	11	54	31	24	15	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57778--57826	20	2.5	20	89	0	80	30	30	14	24	1.94
57699--57880	77	2.4	77	93	0	301	34	24	14	26	1.94
57798--57940	57	2.5	57	90	0	232	35	25	13	25	1.93
57855--58102	77	3.2	77	90	0	370	33	22	15	28	1.95
57913--57960	20	2.4	20	92	0	78	31	31	14	22	1.94
57726--58017	134	2.2	134	93	0	494	34	23	15	26	1.94
58156--58280	57	2.2	57	94	0	214	25	16	23	35	1.95
59153--59178	13	2.0	13	100	0	52	38	23	7	30	1.83
60846--60891	6	7.7	6	85	0	65	41	2	19	36	1.64
60846--60896	18	2.8	18	91	5	77	39	1	19	39	1.63
61426--61450	12	2.1	12	100	0	50	44	0	0	56	0.99
62966--63010	23	2.0	23	82	8	56	46	8	2	42	1.47
65777--65811	18	1.9	18	94	0	61	42	2	0	54	1.15
65804--65846	17	2.6	18	78	14	56	46	0	2	51	1.13
65924--65958	17	2.1	17	88	0	52	54	0	0	45	0.99
67406--67440	11	3.1	11	87	4	52	62	22	0	14	1.31
72509--72541	6	5.5	6	100	0	66	30	36	18	15	1.91
74368--74417	24	2.1	24	85	7	66	24	14	6	56	1.60
74787--74817	15	2.1	15	100	0	62	6	74	0	19	1.03
75183--75237	27	2.0	28	85	3	76	32	18	12	36	1.88
76430--76587	53	3.0	52	89	3	235	40	8	20	30	1.83
80388--80476	34	2.7	31	82	6	97	38	0	2	59	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83420--83462	16	2.6	16	81	3	50	53	0	2	44	1.13
83977--84003	11	2.5	11	100	0	54	29	0	0	70	0.88
84062--84118	10	5.6	10	85	4	69	22	1	7	68	1.23
88462--88595	66	2.0	67	95	1	243	26	4	23	46	1.71

Tables:   1

The End!