Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002482.1 Hibiscus syriacus cultivar Beakdansim tig00005068_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115016
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Found at i:371 original size:13 final size:13
Alignment explanation
Indices: 353--384 Score: 55
Period size: 13 Copynumber: 2.4 Consensus size: 13
343 CTTCTATTGT
353 TTATCCATGAACA
1 TTATCCATGAACA
366 TTATCCATGAACA
1 TTATCCATGAACA
379 TGTATC
1 T-TATC
385 ATACTATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 14 0.78
14 4 0.22
ACGTcount: A:0.34, C:0.22, G:0.09, T:0.34
Consensus pattern (13 bp):
TTATCCATGAACA
Found at i:915 original size:17 final size:16
Alignment explanation
Indices: 888--943 Score: 67
Period size: 17 Copynumber: 3.4 Consensus size: 16
878 CAACAAAAAA
*
888 AAATACAATATTTATAT
1 AAATAAAATATTTA-AT
* *
905 AAATAATATATTTAAA
1 AAATAAAATATTTAAT
921 AAATAAAAATATTTAAT
1 AAAT-AAAATATTTAAT
938 AAATAA
1 AAATAA
944 CTGTGGGTGA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
16 7 0.21
17 26 0.79
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (16 bp):
AAATAAAATATTTAAT
Found at i:4244 original size:60 final size:59
Alignment explanation
Indices: 4134--4266 Score: 171
Period size: 60 Copynumber: 2.2 Consensus size: 59
4124 ACTCGGGTGA
* *
4134 CATTTTTTAACTTTTAATAGTCGAGGAACTCAACAAAGCAACGTCCTATAGTCAATGGAC
1 CATTTTGTAACTTTTAATAGTCGAGGAACTCAACAAAGCAACGACCTATAGTCAA-GGAC
* **
4194 CATTTTGTAACTTTTAATAGTCGAGGGACTCAACAAAGCTTC-ACCTTATAGTCAAGGAC
1 CATTTTGTAACTTTTAATAGTCGAGGAACTCAACAAAGCAACGACC-TATAGTCAAGGAC
*
4253 TATTTGTGT-ACTTT
1 CATTT-TGTAACTTT
4267 ACCATAAATA
Statistics
Matches: 65, Mismatches: 6, Indels: 5
0.86 0.08 0.07
Matches are distributed among these distances:
59 15 0.23
60 50 0.77
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.34
Consensus pattern (59 bp):
CATTTTGTAACTTTTAATAGTCGAGGAACTCAACAAAGCAACGACCTATAGTCAAGGAC
Found at i:5313 original size:31 final size:31
Alignment explanation
Indices: 5257--5343 Score: 102
Period size: 31 Copynumber: 2.8 Consensus size: 31
5247 AGTTTCAAAA
* *
5257 GTAATAAATTGGTCACTAACGTTATTGAATT
1 GTAATAAATCGGTCACTAACATTATTGAATT
* * *
5288 GTAACAAATCGGTCGCTAACATTATTGATTT
1 GTAATAAATCGGTCACTAACATTATTGAATT
* *
5319 GTAATAAATTGATCACTTAACATTA
1 GTAATAAATCGGTCAC-TAACATTA
5344 ACAACCGTTA
Statistics
Matches: 46, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
31 38 0.83
32 8 0.17
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.37
Consensus pattern (31 bp):
GTAATAAATCGGTCACTAACATTATTGAATT
Found at i:13163 original size:4 final size:4
Alignment explanation
Indices: 13154--13203 Score: 64
Period size: 4 Copynumber: 12.5 Consensus size: 4
13144 ACTCCCGAGA
* * * *
13154 TATG TATG TATG TATG TATG CATG CATG TATT TATG TATG TATA TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
13202 TA
1 TA
13204 ATGAAAATGC
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 40 1.00
ACGTcount: A:0.28, C:0.04, G:0.20, T:0.48
Consensus pattern (4 bp):
TATG
Found at i:18628 original size:35 final size:35
Alignment explanation
Indices: 18589--18662 Score: 139
Period size: 35 Copynumber: 2.1 Consensus size: 35
18579 TTCTCTGCTC
*
18589 ATCGTCTTCTCGACAACTATAAATGATCAAACCGT
1 ATCGTCTTCTCGACAACTACAAATGATCAAACCGT
18624 ATCGTCTTCTCGACAACTACAAATGATCAAACCGT
1 ATCGTCTTCTCGACAACTACAAATGATCAAACCGT
18659 ATCG
1 ATCG
18663 GATCGTGGCC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.34, C:0.27, G:0.12, T:0.27
Consensus pattern (35 bp):
ATCGTCTTCTCGACAACTACAAATGATCAAACCGT
Found at i:19099 original size:18 final size:17
Alignment explanation
Indices: 19066--19101 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
19056 TTAAAAATAT
*
19066 ATATATATTTTTAATTA
1 ATATAAATTTTTAATTA
19083 ATATAAATTTATTAATTA
1 ATATAAATTT-TTAATTA
19101 A
1 A
19102 GTTATTATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
ATATAAATTTTTAATTA
Found at i:26826 original size:178 final size:176
Alignment explanation
Indices: 26481--26835 Score: 459
Period size: 178 Copynumber: 2.0 Consensus size: 176
26471 CTGTTCCACC
26481 TGTTTTATAGGGTTTTCTCCATTCCTTGATTTTTTTTTCTTATTGGGTTATTTGGTATTGTTTTC
1 TGTTTTATAGGGTTTTCTCCATTCCTTGATTTTTTTTTCTTA-TGGGTTATTTGGTATTGTTTTC
* **** * *
26546 ATTTTGATACGTTGCCAAATTATATAGTTTTTTGAACTGAGCTTGATATATGGTAGTTTCTTATC
65 ATTCTGATACGTTGCCAAATTATATAGTTTAAAAAAATGAGCTTGATATAGGGTAGTTTCTTATC
* *
26611 CTTCTGTGATTGTTTCATGTTTGAGCTTGTTATTGGAACATTTCATT
130 CTTCTGTGATTATTTCATGTTTGAGCTTGTAATTGGAACATTTCATT
*
26658 TGTTTTATAGGGTTTTCTTCATTCCTTGATTTTTTTTATC-TA-GGGTTATTTGGTATTGTTTTC
1 TGTTTTATAGGGTTTTCTCCATTCCTTGATTTTTTTT-TCTTATGGGTTATTTGGTATTGTTTTC
* * * * *
26721 ATTCTGATACTTTGTCGAATTATCTAGGTTTAAAAAAAAAATGAGCTTGCTAT-GGAGTAGTTTT
65 ATTCTGATACGTTGCCAAATTATATA-GTTT---AAAAAAATGAGCTTGATATAGG-GTAG-TTT
*
26785 CTTATCC-T-TGTGATTATTTCATGTTTGAGCTTGTAATTGGAACGTTTCATT
124 CTTATCCTTCTGTGATTATTTCATGTTTGAGCTTGTAATTGGAACATTTCATT
26836 GTTATACAAT
Statistics
Matches: 155, Mismatches: 16, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
175 42 0.27
176 4 0.03
177 38 0.25
178 43 0.28
179 18 0.12
180 10 0.06
ACGTcount: A:0.20, C:0.11, G:0.18, T:0.51
Consensus pattern (176 bp):
TGTTTTATAGGGTTTTCTCCATTCCTTGATTTTTTTTTCTTATGGGTTATTTGGTATTGTTTTCA
TTCTGATACGTTGCCAAATTATATAGTTTAAAAAAATGAGCTTGATATAGGGTAGTTTCTTATCC
TTCTGTGATTATTTCATGTTTGAGCTTGTAATTGGAACATTTCATT
Found at i:31530 original size:24 final size:24
Alignment explanation
Indices: 31490--31547 Score: 59
Period size: 24 Copynumber: 2.5 Consensus size: 24
31480 TTAGTATTTC
*
31490 TCTTT-AATATATTTTTACATAT-CA
1 TCTTTAAATA-ATATTTA-ATATACA
*
31514 TCTTTAAATAATATTTAATTTACA
1 TCTTTAAATAATATTTAATATACA
31538 T-TTTAAATAA
1 TCTTTAAATAA
31548 GGGTAAACTA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
23 12 0.40
24 14 0.47
25 4 0.13
ACGTcount: A:0.40, C:0.09, G:0.00, T:0.52
Consensus pattern (24 bp):
TCTTTAAATAATATTTAATATACA
Found at i:35308 original size:5 final size:5
Alignment explanation
Indices: 35298--35323 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
35288 AGTCATATAT
35298 TCGGG TCGGG TCGGG TCGGG TCGGG T
1 TCGGG TCGGG TCGGG TCGGG TCGGG T
35324 GAAACATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.19, G:0.58, T:0.23
Consensus pattern (5 bp):
TCGGG
Found at i:44571 original size:105 final size:105
Alignment explanation
Indices: 44428--45042 Score: 1097
Period size: 105 Copynumber: 5.8 Consensus size: 105
44418 GAAGTTGACG
** *** *
44428 GTTGACAGTCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTACTGTCTTGAGTCCAATATCCTTC
1 GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTC
*
44493 GTTGTGAAGCTGAAATTGGCTCTGAAATTGAGAAATGTTT
66 GTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTT
44533 GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTC
1 GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTC
* *
44598 GTTGTGAAGTTGAAATTGGCTCTGACATTGAGAAATATTT
66 GTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTT
44638 GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTC
1 GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTC
44703 GTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTT
66 GTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTT
44743 GTTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTT
1 G-TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTT
44808 CGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTT
65 CGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTT
*
44849 GGTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTC
1 GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTC
*
44914 GCTGTGAAGTTGAAATTGGCTCT-AAATTTGAGAAATGTTT
66 GTTGTGAAGTTGAAATTGGCTCTGAAA-TTGAGAAATGTTT
*
44954 GGTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTC
1 GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTC
45019 GTTGTGAAGTTGAAATTGGCTCTG
66 GTTGTGAAGTTGAAATTGGCTCTG
45043 GGTAAAACCT
Statistics
Matches: 493, Mismatches: 14, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
104 3 0.01
105 385 0.78
106 105 0.21
ACGTcount: A:0.22, C:0.19, G:0.26, T:0.33
Consensus pattern (105 bp):
GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTC
GTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTT
Found at i:44799 original size:211 final size:210
Alignment explanation
Indices: 44428--45042 Score: 1097
Period size: 211 Copynumber: 2.9 Consensus size: 210
44418 GAAGTTGACG
** *** *
44428 GTTGACAGTCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTACTGTCTTGAGTCCAATATCCTTC
1 GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTC
*
44493 GTTGTGAAGCTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTC
66 GTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTC
44558 GTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGA
131 GTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGA
*
44623 CATTGAGAAATATTT
196 AATTGAGAAATATTT
44638 GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTC
1 GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTC
44703 GTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTTGACAACCAGCGGTCCCTTCGT
66 GTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTG-TTGACAACCAGCGGTCCCTTCGT
44768 CGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTG
130 CGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTG
*
44833 AAATTGAGAAATGTTT
195 AAATTGAGAAATATTT
*
44849 GGTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTC
1 GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTC
* *
44914 GCTGTGAAGTTGAAATTGGCTCT-AAATTTGAGAAATGTTTGGTGACAACCAGCGGTCCCTTCGT
66 GTTGTGAAGTTGAAATTGGCTCTGAAA-TTGAGAAATGTTTGTTGACAACCAGCGGTCCCTTCGT
44978 CGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTG
130 CGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTG
45043 GGTAAAACCT
Statistics
Matches: 391, Mismatches: 12, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
210 189 0.48
211 202 0.52
ACGTcount: A:0.22, C:0.19, G:0.26, T:0.33
Consensus pattern (210 bp):
GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTC
GTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTC
GTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGA
AATTGAGAAATATTT
Found at i:44825 original size:316 final size:316
Alignment explanation
Indices: 44437--45042 Score: 1106
Period size: 316 Copynumber: 1.9 Consensus size: 316
44427 GGTTGACAGT
* *
44437 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTACTGTCTTGAGTCCAATATCCTTCGTTGTGAAG
1 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCACTGTCTGGAGTCCAATATCCTTCGTTGTGAAG
*
44502 CTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTG
66 CTGAAATTGGCTCTGAAATTGAGAAATGTTTGGTGACAACCAGCGGTCCCTTCGTCGTGAAGTTG
* *
44567 AACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGACA-TTGAGA
131 AACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCT-AAATTTGAGA
*
44631 AATATTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAAT
195 AATATTTGGTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAAT
44696 ATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTTGACAAC
260 ATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTTGACAAC
**
44753 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAG
1 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCACTGTCTGGAGTCCAATATCCTTCGTTGTGAAG
*
44818 TTGAAATTGGCTCTGAAATTGAGAAATGTTTGGTGACAACCAGCGGTCCCTTCGTCGTGAAGTTG
66 CTGAAATTGGCTCTGAAATTGAGAAATGTTTGGTGACAACCAGCGGTCCCTTCGTCGTGAAGTTG
44883 AACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTAAATTTGAGAA
131 AACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTAAATTTGAGAA
*
44948 ATGTTTGGTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATA
196 ATATTTGGTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATA
45013 TCCTTCGTTGTGAAGTTGAAATTGGCTCTG
261 TCCTTCGTTGTGAAGTTGAAATTGGCTCTG
45043 GGTAAAACCT
Statistics
Matches: 279, Mismatches: 10, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
315 2 0.01
316 277 0.99
ACGTcount: A:0.22, C:0.19, G:0.26, T:0.33
Consensus pattern (316 bp):
CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCACTGTCTGGAGTCCAATATCCTTCGTTGTGAAG
CTGAAATTGGCTCTGAAATTGAGAAATGTTTGGTGACAACCAGCGGTCCCTTCGTCGTGAAGTTG
AACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTAAATTTGAGAA
ATATTTGGTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATA
TCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTTGACAAC
Found at i:52452 original size:21 final size:22
Alignment explanation
Indices: 52427--52475 Score: 57
Period size: 20 Copynumber: 2.3 Consensus size: 22
52417 TCTTTATTTG
*
52427 ATCTTCTAATATTTTTATCTTT
1 ATCTTCTAATATTTTTAGCTTT
* *
52449 -TCTTC-CATCTTTTTAGCTTT
1 ATCTTCTAATATTTTTAGCTTT
52469 ATCTTCT
1 ATCTTCT
52476 TCATCAAAGT
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.16, C:0.20, G:0.02, T:0.61
Consensus pattern (22 bp):
ATCTTCTAATATTTTTAGCTTT
Found at i:52600 original size:39 final size:39
Alignment explanation
Indices: 52552--52629 Score: 95
Period size: 39 Copynumber: 2.0 Consensus size: 39
52542 TTCGCAGCAG
* *
52552 GTGCAACTTTCGCTTTGGTAAC-GAGTGAGTCCCCGGGTA
1 GTGCAACTTTCCCTTTAGTAACAGA-TGAGTCCCCGGGTA
* * *
52591 GTGCTACTTTCCCTTTAGTAGCAGATGCGTCCCCGGGTA
1 GTGCAACTTTCCCTTTAGTAACAGATGAGTCCCCGGGTA
52630 ATATTCCGGG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
39 31 0.94
40 2 0.06
ACGTcount: A:0.17, C:0.26, G:0.28, T:0.29
Consensus pattern (39 bp):
GTGCAACTTTCCCTTTAGTAACAGATGAGTCCCCGGGTA
Found at i:59160 original size:2 final size:2
Alignment explanation
Indices: 59153--59180 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
59143 CATTTCATAA
59153 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
59181 TTGAATTCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:59672 original size:30 final size:30
Alignment explanation
Indices: 59631--59696 Score: 96
Period size: 30 Copynumber: 2.2 Consensus size: 30
59621 GTTAACATCG
* * *
59631 AGTGACGATTTTGTAACAAACGATAACGTT
1 AGTGACCATTTTATAACAAACGATAACATT
*
59661 AGTGACCATTTTATAACAAACGATAATATT
1 AGTGACCATTTTATAACAAACGATAACATT
59691 AGTGAC
1 AGTGAC
59697 GAACTTGTGA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (30 bp):
AGTGACCATTTTATAACAAACGATAACATT
Found at i:66722 original size:60 final size:60
Alignment explanation
Indices: 66600--66729 Score: 138
Period size: 60 Copynumber: 2.1 Consensus size: 60
66590 GTCGGGTGAC
* * * * *
66600 CATTTTATAACTTTTAATAGTCGAATGACTAAACAAAATAGCACTTTATAGTCGGAGTAT
1 CATTTTGTAACTTTTAATAGTCGAATGACTAAACAAAACAGCACTCTAGAGTCAGAGTAT
* * * *
66660 CATTTTGTAACTTTTAATAGTCGAGTGACTTAATAAAACAGTA-TACTAGAGTCAAGAG-AT
1 CATTTTGTAACTTTTAATAGTCGAATGACTAAACAAAACAGCACT-CTAGAGTC-AGAGTAT
66720 CATTTGTGTA
1 CATTT-TGTA
66730 TTTTACCCAA
Statistics
Matches: 58, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
59 1 0.02
60 50 0.86
61 7 0.12
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.35
Consensus pattern (60 bp):
CATTTTGTAACTTTTAATAGTCGAATGACTAAACAAAACAGCACTCTAGAGTCAGAGTAT
Found at i:70596 original size:31 final size:31
Alignment explanation
Indices: 70560--70618 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
70550 AACTTAAAAG
* *
70560 AGTTTTGCAATACTGAGATTTAAATAATTTT
1 AGTTTTACAATACTGAAATTTAAATAATTTT
70591 AGTTTTACAATACTGAAATTTAAATAAT
1 AGTTTTACAATACTGAAATTTAAATAAT
70619 CCATACAACT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.42
Consensus pattern (31 bp):
AGTTTTACAATACTGAAATTTAAATAATTTT
Found at i:70669 original size:22 final size:22
Alignment explanation
Indices: 70643--70685 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
70633 TAATAAATTA
70643 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
70665 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
70686 CTAATTAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:70697 original size:54 final size:54
Alignment explanation
Indices: 70633--71414 Score: 365
Period size: 54 Copynumber: 14.4 Consensus size: 54
70623 ACAACTACAA
*
70633 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
1 TAATTAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
* **
70687 TAATTAATTATTTAAAATAAATCAATCCATACAACTACAATAATAAATCAATCCATAC
1 TAATTAATTATTTAAAATAAATCAATCCAT---ATTTTAA-AATAAATCAATCCATAC
* ***
70745 TAATAAATTATTTAAAATAAATCAATCCATACAACTACATAAT-AATCAATCCATA-
1 TAATTAATTATTTAAAATAAATCAATCCATA-TTTTA-A-AATAAATCAATCCATAC
* * * * * *
70800 T-TTTAA--A-AT-AAATCAATCTATACAAATAAATTATTTAAAATAAATCAATCTATAC
1 TAATTAATTATTTAAAATAAATCAAT-C-CAT--A-T-TTTAAAATAAATCAATCCATAC
* *
70855 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATTCATA-
1 TAATTAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
* * * * *
70908 T-TTTAA--A-AT-AAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATA-
1 TAATTAATTATTTAAAATAAATCAAT-C-CAT--A-T-TTTAAAATAAATCAATCCATAC
* * * * * *
70962 T-TTTAA--A-AT-AAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCTATAC
1 TAATTAATTATTTAAAATAAATCAAT-C-CAT--A-T-TTTAAAATAAATCAATCCATAC
* *
71017 -AACTACA--A--T--ATTAAATCAATCCATATTTTAAAATAAATCAATCCATAC
1 TAATTA-ATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
* *
71065 AAATAAATTATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATAC
1 TAATTAATTATTTAAAATAAATCAAT-C---C--AT--A-T-TTTAAAATAAATCAATCCATAC
*
71129 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATA-
1 TAATTAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
* * * * **
71182 T-TTTAA--AATAAATCAATACATACTAATAAAT-TATTTAAAATAAATCAATCCATA-
1 TAATTAATTATTTAA--AATAAAT-C-AATCCATAT-TTTAAAATAAATCAATCCATAC
* * * * * *
71236 T-TTTAA--A-AT-AAATCAATCCATACTAATAAATTATTTAAAATAAATCAATTCATAC
1 TAATTAATTATTTAAAATAAATCAAT-C-CAT--A-T-TTTAAAATAAATCAATCCATAC
* *
71291 -AACTACA--A--T--AATAAATCAATCCATATTTTAAAATAAATCAGTCCATAC
1 TAATTA-ATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
* * *
71339 TAATAAATTATTTAAAATAAATCAATCTATATTTTAAAATAAATCAATTCATAC
1 TAATTAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
* *
71393 TAATAAATTATTTTAAATAAAT
1 TAATTAATTATTTAAAATAAAT
71415 TATTTTAAAA
Statistics
Matches: 589, Mismatches: 74, Indels: 130
0.74 0.09 0.16
Matches are distributed among these distances:
48 55 0.09
49 11 0.02
50 29 0.05
51 2 0.00
52 23 0.04
53 10 0.02
54 297 0.50
55 14 0.02
56 22 0.04
57 9 0.02
58 52 0.09
59 2 0.00
60 13 0.02
62 1 0.00
63 2 0.00
64 47 0.08
ACGTcount: A:0.52, C:0.13, G:0.00, T:0.35
Consensus pattern (54 bp):
TAATTAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
Found at i:70703 original size:32 final size:32
Alignment explanation
Indices: 70665--70776 Score: 148
Period size: 32 Copynumber: 3.7 Consensus size: 32
70655 CAATCCATAT
*
70665 TTTAAAATAAATCAATCCATACTAATTAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
70697 TTTAAAATAAATCAATCCATAC-AACTACA--A
1 TTTAAAATAAATCAATCCATACTAA-TAAATTA
70727 --T--AATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
70755 TTTAAAATAAATCAATCCATAC
1 TTTAAAATAAATCAATCCATAC
70777 AACTACATAA
Statistics
Matches: 69, Mismatches: 3, Indels: 16
0.78 0.03 0.18
Matches are distributed among these distances:
26 20 0.29
27 2 0.03
28 2 0.03
30 2 0.03
31 2 0.03
32 41 0.59
ACGTcount: A:0.52, C:0.16, G:0.00, T:0.32
Consensus pattern (32 bp):
TTTAAAATAAATCAATCCATACTAATAAATTA
Found at i:70754 original size:58 final size:58
Alignment explanation
Indices: 70633--70799 Score: 256
Period size: 58 Copynumber: 3.0 Consensus size: 58
70623 ACAACTACAA
* **
70633 TAATAAATTATTTAAAATAAATCAATCCAT---ATTTTAA-AATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATACAACTACAATAATAAATCAATCCATAC
*
70687 TAATTAATTATTTAAAATAAATCAATCCATACAACTACAATAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATACAACTACAATAATAAATCAATCCATAC
70745 TAATAAATTATTTAAAATAAATCAATCCATACAACTAC-ATAAT-AATCAATCCATA
1 TAATAAATTATTTAAAATAAATCAATCCATACAACTACAATAATAAATCAATCCATA
70800 TTTTAAAATA
Statistics
Matches: 104, Mismatches: 5, Indels: 6
0.90 0.04 0.05
Matches are distributed among these distances:
54 29 0.28
56 12 0.12
57 9 0.09
58 54 0.52
ACGTcount: A:0.52, C:0.16, G:0.00, T:0.32
Consensus pattern (58 bp):
TAATAAATTATTTAAAATAAATCAATCCATACAACTACAATAATAAATCAATCCATAC
Found at i:70840 original size:14 final size:14
Alignment explanation
Indices: 70823--70876 Score: 54
Period size: 14 Copynumber: 3.6 Consensus size: 14
70813 CAATCTATAC
70823 AAATAAATTATTTA
1 AAATAAATTATTTA
*
70837 AAATAAATCAATCTATA
1 AAATAAAT-TAT-T-TA
*
70854 CTAATAAATTATTTA
1 -AAATAAATTATTTA
70869 AAATAAAT
1 AAATAAAT
70877 CAATCCATAT
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
14 15 0.47
15 4 0.12
16 2 0.06
17 4 0.12
18 7 0.22
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (14 bp):
AAATAAATTATTTA
Found at i:70840 original size:32 final size:32
Alignment explanation
Indices: 70801--71231 Score: 222
Period size: 32 Copynumber: 12.5 Consensus size: 32
70791 CAATCCATAT
70801 TTTAAAATAAATCAATCTATACAAATAAATTA
1 TTTAAAATAAATCAATCTATACAAATAAATTA
*
70833 TTTAAAATAAATCAATCTATACTAATAAATTA
1 TTTAAAATAAATCAATCTATACAAATAAATTA
70865 TTTAAAATAAATCAATCCATATTTTA-AAATAAATCAATTCATA
1 TTTAAAATAAATCAAT-C-TA---TACAAAT--A--AA-T--TA
* *
70908 TTTTAAAATAAATCAATCCATACTAATAAATTA
1 -TTTAAAATAAATCAATCTATACAAATAAATTA
*
70941 TTTAAAATAAATCAATCCATATTTTA-AAATAAATCAA
1 TTTAAAATAAATCAAT-C-TA---TACAAATAAAT-TA
* * * *
70978 TCCATACTAATAAAT-TAT-T-TA-AAATAAATCAA
1 T--TTA-AAATAAATCAATCTATACAAATAAAT-TA
* * **
71010 TCTATACAACTACAAT--AT-TAAATC-AATCCA-TA
1 T-T-TA-AAATA-AATCAATCTATA-CAAATAAATTA
*
71042 TTTTAAAATAAATCAATCCATACAAATAAATTA
1 -TTTAAAATAAATCAATCTATACAAATAAATTA
* *
71075 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCTATACAAATAAATTA
* *
71107 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCTATACAAATAAATTA
71139 TTTAAAATAAATCAATCCATATTTTA-AAATAAATCAATCCATA
1 TTTAAAATAAATCAAT-C-TA---TACAAAT--A--AAT---TA
*
71182 TTTTAAAATAAATCAATAC-ATACTAATAAATTA
1 -TTTAAAATAAATCAAT-CTATACAAATAAATTA
71215 TTTAAAATAAATCAATC
1 TTTAAAATAAATCAATC
71232 CATATTTTAA
Statistics
Matches: 324, Mismatches: 27, Indels: 97
0.72 0.06 0.22
Matches are distributed among these distances:
29 3 0.01
30 4 0.01
31 7 0.02
32 189 0.58
33 14 0.04
34 8 0.02
35 1 0.00
36 19 0.06
37 8 0.02
38 4 0.01
39 8 0.02
40 18 0.06
41 1 0.00
42 2 0.01
43 5 0.02
44 33 0.10
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (32 bp):
TTTAAAATAAATCAATCTATACAAATAAATTA
Found at i:70938 original size:22 final size:22
Alignment explanation
Indices: 70865--70929 Score: 121
Period size: 22 Copynumber: 3.0 Consensus size: 22
70855 TAATAAATTA
70865 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
*
70887 TTTAAAATAAATCAATTCATAT
1 TTTAAAATAAATCAATCCATAT
70909 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
70930 CTAATAAATT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 41 1.00
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:70967 original size:22 final size:22
Alignment explanation
Indices: 70941--70983 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
70931 TAATAAATTA
70941 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
70963 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
70984 CTAATAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:70992 original size:22 final size:22
Alignment explanation
Indices: 70943--70991 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
70933 ATAAATTATT
**
70943 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
70965 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
70988 TAAA
1 TAAA
70992 TTATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:71079 original size:112 final size:104
Alignment explanation
Indices: 70941--71235 Score: 400
Period size: 112 Copynumber: 2.7 Consensus size: 104
70931 TAATAAATTA
70941 TTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAA
1 TTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAA
*
71006 TCAATCTATAC-AACTACAA-TA-T-TAAATCAATCCATAT
66 TCAATCCATACTAA-TA-AATTATTATAAATCAATCCATAT
71043 TTTAAAATAAATCAATCCATACAAATAAATTATTTAAAATAAATCAATCCATACTAATAAATTAT
1 TTTAAAATAAATCAAT-C---C--AT--A-T-TTTAAAATAAATCAATCCATACTAATAAATTAT
71108 TTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATAT
56 TTAAAATAAATCAATCCATACTAATAAATTA-TT---ATAAATCAATCCATAT
*
71161 TTTAAAATAAATCAATCCATATTTTAAAATAAATCAATACATACTAATAAATTATTTAAAATAAA
1 TTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAA
71226 TCAATCCATA
66 TCAATCCATA
71236 TTTTAAAATA
Statistics
Matches: 173, Mismatches: 2, Indels: 30
0.84 0.01 0.15
Matches are distributed among these distances:
102 16 0.09
103 1 0.01
106 1 0.01
108 54 0.31
109 1 0.01
110 2 0.01
111 3 0.02
112 59 0.34
113 2 0.01
114 2 0.01
117 1 0.01
118 31 0.18
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.34
Consensus pattern (104 bp):
TTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAA
TCAATCCATACTAATAAATTATTATAAATCAATCCATAT
Found at i:71138 original size:274 final size:273
Alignment explanation
Indices: 70633--71449 Score: 1164
Period size: 274 Copynumber: 3.0 Consensus size: 273
70623 ACAACTACAA
*
70633 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATTAATTAT
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTAT
*
70698 TTAAAATAAATCAATCCATACAACTACAATAATAAATCAATCCATACTAATAAATTATTTAAAAT
66 TTAAAATAAATCAATCTATACAACTACAATAATAAATCAAT-C---C--AT--A-T-TTTAAAAT
*
70763 AAATCAATCCATACAACTACATAATAATCAATCCATATTTTAAAATAAATCAATCTATACAAATA
121 AAATCAAT-C---C-A-TACA-AAT-A--AAT---TA-TTTAAAATAAATCAATC-ATACTAATA
*
70828 AATTATTTAAAATAAATCAATCTATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAA
171 AATTATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAA
* *
70893 ATAAATCAATTCATATTTTAAAATAAATCAATCCATAC
236 ATAAATCAATCCATATTTTAAAATAAATCAATACATAC
70931 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTAT
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTAT
*
70996 TTAAAATAAATCAATCTATACAACTACAATATTAAATCAATCCATATTTTAAAATAAATCAATCC
66 TTAAAATAAATCAATCTATACAACTACAATAATAAATCAATCCATATTTTAAAATAAATCAATCC
71061 ATACAAATAAATTATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCA
131 ATACAAATAAATTATTTAAAATAAATCAAT-CATACTAATAAATTATTTAAAATAAATCAATCCA
71126 TACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATATTTTAAAAT
195 TACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATATTTTAAAAT
71191 AAATCAATACATAC
260 AAATCAATACATAC
71205 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTAT
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTAT
*
71270 TTAAAATAAATCAAT-TCATACAACTACAATAATAAATCAATCCATATTTTAAAATAAATCAGTC
66 TTAAAATAAATCAATCT-ATACAACTACAATAATAAATCAATCCATATTTTAAAATAAATCAATC
* *
71334 CATACTAATAAATTATTTAAAATAAATC-A--AT-CT-AT--A-T-TTTAAAATAAATCAATTCA
130 CATACAAATAAATTATTTAAAATAAATCAATCATACTAATAAATTATTTAAAATAAATCAATCCA
* *
71390 TACTAATAAATTATTT----TAAATAAAT---TATTTTAAAATAAATCAATCCATATTTTATAAT
195 TACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATATTTTAAAAT
71448 AA
260 AA
71450 TTTATTTTAA
Statistics
Matches: 504, Mismatches: 13, Indels: 45
0.90 0.02 0.08
Matches are distributed among these distances:
257 34 0.07
260 8 0.02
264 34 0.07
265 1 0.00
266 1 0.00
268 2 0.00
269 2 0.00
270 2 0.00
273 2 0.00
274 276 0.55
275 3 0.01
278 3 0.01
280 1 0.00
281 3 0.01
282 4 0.01
283 1 0.00
284 1 0.00
287 1 0.00
288 16 0.03
289 1 0.00
290 1 0.00
292 2 0.00
294 1 0.00
297 1 0.00
298 103 0.20
ACGTcount: A:0.52, C:0.13, G:0.00, T:0.35
Consensus pattern (273 bp):
TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTAT
TTAAAATAAATCAATCTATACAACTACAATAATAAATCAATCCATATTTTAAAATAAATCAATCC
ATACAAATAAATTATTTAAAATAAATCAATCATACTAATAAATTATTTAAAATAAATCAATCCAT
ACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATATTTTAAAATA
AATCAATACATAC
Found at i:71212 original size:22 final size:22
Alignment explanation
Indices: 71139--71203 Score: 121
Period size: 22 Copynumber: 3.0 Consensus size: 22
71129 TAATAAATTA
71139 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
71161 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
*
71183 TTTAAAATAAATCAATACATA
1 TTTAAAATAAATCAATCCATA
71204 CTAATAAATT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
22 42 1.00
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:71241 original size:22 final size:22
Alignment explanation
Indices: 71215--71257 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
71205 TAATAAATTA
71215 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
71237 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
71258 CTAATAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:71266 original size:22 final size:22
Alignment explanation
Indices: 71217--71265 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
71207 ATAAATTATT
**
71217 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
71239 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
71262 TAAA
1 TAAA
71266 TTATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:71275 original size:32 final size:31
Alignment explanation
Indices: 71237--71414 Score: 107
Period size: 32 Copynumber: 6.4 Consensus size: 31
71227 CAATCCATAT
71237 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAA-TA
* *
71269 TTTAAAATAAATCAATTCATAC-AACTACA-A
1 TTTAAAATAAATCAATCCATACTAA-TAAATA
71299 --T--AATAAATCAATCC--A-T-AT-----
1 TTTAAAATAAATCAATCCATACTAATAAATA
*
71317 TTTAAAATAAATCAGTCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAA-TA
71349 TTTAAAATAAATC-A---AT-CT-AT--AT-
1 TTTAAAATAAATCAATCCATACTAATAAATA
*
71371 TTTAAAATAAATCAATTCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAA-TA
*
71403 TTTTAAATAAAT
1 TTTAAAATAAAT
71415 TATTTTAAAA
Statistics
Matches: 114, Mismatches: 6, Indels: 52
0.66 0.03 0.30
Matches are distributed among these distances:
20 1 0.01
22 26 0.23
23 3 0.03
24 3 0.03
25 1 0.01
26 18 0.16
27 4 0.04
28 5 0.04
30 2 0.02
31 3 0.03
32 48 0.42
ACGTcount: A:0.52, C:0.12, G:0.01, T:0.36
Consensus pattern (31 bp):
TTTAAAATAAATCAATCCATACTAATAAATA
Found at i:71427 original size:15 final size:15
Alignment explanation
Indices: 71394--71556 Score: 220
Period size: 15 Copynumber: 10.5 Consensus size: 15
71384 AATTCATACT
71394 AATAAATTATTTT-A
1 AATAAATTATTTTAA
71408 AATAAATTATTTTAA
1 AATAAATTATTTTAA
*
71423 AATAAATCAATCCATATTTTAT
1 AAT--A--AAT---TATTTTAA
*
71445 AATAATTTATTTTAA
1 AATAAATTATTTTAA
* *
71460 AGTAAATTATTTTAT
1 AATAAATTATTTTAA
71475 AATAAATTATTTTAA
1 AATAAATTATTTTAA
71490 AATAAATTATTTTAA
1 AATAAATTATTTTAA
71505 AATAAATTATTTTAA
1 AATAAATTATTTTAA
71520 AATAAATTATTTTAA
1 AATAAATTATTTTAA
71535 AATAAATTATTTTAA
1 AATAAATTATTTTAA
71550 AATAAAT
1 AATAAAT
71557 AACCTTATTA
Statistics
Matches: 133, Mismatches: 8, Indels: 15
0.85 0.05 0.10
Matches are distributed among these distances:
14 13 0.10
15 103 0.77
17 1 0.01
18 2 0.02
19 3 0.02
20 1 0.01
22 10 0.08
ACGTcount: A:0.51, C:0.02, G:0.01, T:0.47
Consensus pattern (15 bp):
AATAAATTATTTTAA
Found at i:71441 original size:22 final size:22
Alignment explanation
Indices: 71349--71449 Score: 76
Period size: 22 Copynumber: 4.5 Consensus size: 22
71339 TAATAAATTA
*
71349 TTTAAAATAAATCAATCTATAT
1 TTTAAAATAAATCAATCCATAT
*
71371 TTTAAAATAAATCAATTCATACT
1 TTTAAAATAAATCAATCCATA-T
** * ** * **
71394 AATAAATTATTTTAAATAAATTAT
1 TTTAAAATA-AATCAATCCA-TAT
71418 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
*
71440 TTTATAATAA
1 TTTAAAATAA
71450 TTTATTTTAA
Statistics
Matches: 57, Mismatches: 19, Indels: 6
0.70 0.23 0.07
Matches are distributed among these distances:
22 31 0.54
23 12 0.21
24 12 0.21
25 2 0.04
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:84743 original size:26 final size:27
Alignment explanation
Indices: 84691--84743 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
84681 AAAAAAAAGA
* * *
84691 TAAATTTAAATTTGTAAAATTTTAAGG
1 TAAACTTAAATTTATAAAATTATAAGG
84718 TAAACTTAAATTTAT-AAATTATAAGG
1 TAAACTTAAATTTATAAAATTATAAGG
84744 GAATGAAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.47, C:0.02, G:0.09, T:0.42
Consensus pattern (27 bp):
TAAACTTAAATTTATAAAATTATAAGG
Found at i:85619 original size:6 final size:7
Alignment explanation
Indices: 85598--85622 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
85588 ATTAATAACA
85598 TTAATTT
1 TTAATTT
85605 TTAATTT
1 TTAATTT
85612 TTAATTT
1 TTAATTT
85619 TTAA
1 TTAA
85623 AATTTCAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (7 bp):
TTAATTT
Found at i:87582 original size:19 final size:19
Alignment explanation
Indices: 87558--87665 Score: 78
Period size: 19 Copynumber: 5.6 Consensus size: 19
87548 AAATGACCAA
*
87558 CAAATTCGCAACGCGATCT
1 CAAATTCGCAACGCGATTT
* *
87577 CAAATTCACAAC-CCAGTTT
1 CAAATTCGCAACGCGA-TTT
* **
87596 CCAATTTCGCAACGCGAAGT
1 -CAAATTCGCAACGCGATTT
*
87616 CAAATTCGCAACTG-AATTT
1 CAAATTCGCAAC-GCGATTT
*
87635 CAAATTCGCAACGTGAATTT
1 CAAATTCGCAACGCG-ATTT
*
87655 -AATTTCGCAAC
1 CAAATTCGCAAC
87666 AGGTTTTAGT
Statistics
Matches: 69, Mismatches: 14, Indels: 12
0.73 0.15 0.13
Matches are distributed among these distances:
18 3 0.04
19 48 0.70
20 16 0.23
21 2 0.03
ACGTcount: A:0.34, C:0.27, G:0.13, T:0.26
Consensus pattern (19 bp):
CAAATTCGCAACGCGATTT
Found at i:91252 original size:20 final size:20
Alignment explanation
Indices: 91216--91253 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
91206 TTGCGATAGT
**
91216 CAAATTCGCAATGCGAAAGA
1 CAAATTCGCAACACGAAAGA
91236 CAAATTCGCAACACGAAA
1 CAAATTCGCAACACGAAA
91254 TCGCAAATCG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.47, C:0.24, G:0.16, T:0.13
Consensus pattern (20 bp):
CAAATTCGCAACACGAAAGA
Found at i:91302 original size:20 final size:20
Alignment explanation
Indices: 91262--91318 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
91252 AATCGCAAAT
*
91262 CGAATTTGACTTTTGCATTG
1 CGAATTTGACTTTCGCATTG
*
91282 CGAATTTGACTTTCGCGTTG
1 CGAATTTGACTTTCGCATTG
* * *
91302 CAAATATGACTATCGCA
1 CGAATTTGACTTTCGCA
91319 ACGCGAAATA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (20 bp):
CGAATTTGACTTTCGCATTG
Found at i:91446 original size:25 final size:25
Alignment explanation
Indices: 91408--91457 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
91398 AAATCAATTA
*
91408 AACATTGTTGTGGGTACATTATTTG
1 AACATTGTTATGGGTACATTATTTG
*
91433 AACATTGTTATGGGTATATTATTTG
1 AACATTGTTATGGGTACATTATTTG
91458 GAAAAATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.26, C:0.06, G:0.22, T:0.46
Consensus pattern (25 bp):
AACATTGTTATGGGTACATTATTTG
Found at i:91887 original size:24 final size:24
Alignment explanation
Indices: 91836--91888 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
91826 TTTCATATGT
* * *
91836 AATTGGAGTTTGAATTTCAATTTC
1 AATTTGAGTTTGAATTTCAATATA
*
91860 AATTTGAGTTTGAATTTTAATATA
1 AATTTGAGTTTGAATTTCAATATA
91884 AATTT
1 AATTT
91889 CGGCTCCACT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.34, C:0.04, G:0.13, T:0.49
Consensus pattern (24 bp):
AATTTGAGTTTGAATTTCAATATA
Found at i:92238 original size:39 final size:39
Alignment explanation
Indices: 92191--92277 Score: 138
Period size: 39 Copynumber: 2.2 Consensus size: 39
92181 TCTGATGCTC
* *
92191 ATCAAAATCCAAAGCTCATATGGTGCTAAGCAAAAGGAA
1 ATCAAAATCCAAAGCACATATGGTGCCAAGCAAAAGGAA
* *
92230 ATCCAAATCCAAATCACATATGGTGCCAAGCAAAAGGAA
1 ATCAAAATCCAAAGCACATATGGTGCCAAGCAAAAGGAA
92269 ATCAAAATC
1 ATCAAAATC
92278 TACAACTTGA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.47, C:0.21, G:0.15, T:0.17
Consensus pattern (39 bp):
ATCAAAATCCAAAGCACATATGGTGCCAAGCAAAAGGAA
Found at i:92464 original size:20 final size:20
Alignment explanation
Indices: 92436--92475 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
92426 ATGTTGCGAT
* *
92436 CAACGCGAAAGTTAAATTCG
1 CAACACGAAAGTCAAATTCG
92456 CAACACGAAAGTCAAATTCG
1 CAACACGAAAGTCAAATTCG
92476 TAAACCAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.42, C:0.23, G:0.17, T:0.17
Consensus pattern (20 bp):
CAACACGAAAGTCAAATTCG
Found at i:92566 original size:19 final size:20
Alignment explanation
Indices: 92542--92580 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
92532 CGCTTATTTC
92542 GCGTTGCGAATTTG-ACTTT
1 GCGTTGCGAATTTGTACTTT
92561 GCGTTGCGAATTTGTACTTT
1 GCGTTGCGAATTTGTACTTT
92581 CAACAGGGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.15, C:0.15, G:0.26, T:0.44
Consensus pattern (20 bp):
GCGTTGCGAATTTGTACTTT
Found at i:96696 original size:22 final size:22
Alignment explanation
Indices: 96641--96698 Score: 89
Period size: 22 Copynumber: 2.6 Consensus size: 22
96631 GATGGAGATA
*
96641 GACGGATTTAGTCGGAAATGGG
1 GACGGATTTCGTCGGAAATGGG
*
96663 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGTCGGAAATGGG
*
96685 GACGGATGTCGTCG
1 GACGGATTTCGTCG
96699 TAGAGAGTGA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.21, C:0.14, G:0.43, T:0.22
Consensus pattern (22 bp):
GACGGATTTCGTCGGAAATGGG
Found at i:96916 original size:20 final size:21
Alignment explanation
Indices: 96867--96920 Score: 76
Period size: 20 Copynumber: 2.7 Consensus size: 21
96857 CGATTTACAT
96867 ATTCGCGTTGCGAAATTGGAA
1 ATTCGCGTTGCGAAATTGGAA
* *
96888 ACT-GGGTTGCGAAATT-GAA
1 ATTCGCGTTGCGAAATTGGAA
96907 ATTCGCGTTGCGAA
1 ATTCGCGTTGCGAA
96921 TTTGTTGGAC
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
19 5 0.18
20 21 0.75
21 2 0.07
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.28
Consensus pattern (21 bp):
ATTCGCGTTGCGAAATTGGAA
Found at i:101317 original size:54 final size:54
Alignment explanation
Indices: 101253--101360 Score: 207
Period size: 54 Copynumber: 2.0 Consensus size: 54
101243 TATAGAATAT
*
101253 TATTTTGTTAAGTATCTCGACTATTAAGAGTTATAAATTGTTCACCCGACTAGA
1 TATTTTGTTAAGTATCTCGACTATTAAAAGTTATAAATTGTTCACCCGACTAGA
101307 TATTTTGTTAAGTATCTCGACTATTAAAAGTTATAAATTGTTCACCCGACTAGA
1 TATTTTGTTAAGTATCTCGACTATTAAAAGTTATAAATTGTTCACCCGACTAGA
101361 GATTATGCTC
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.39
Consensus pattern (54 bp):
TATTTTGTTAAGTATCTCGACTATTAAAAGTTATAAATTGTTCACCCGACTAGA
Found at i:103041 original size:19 final size:18
Alignment explanation
Indices: 103006--103061 Score: 53
Period size: 19 Copynumber: 3.1 Consensus size: 18
102996 TTTACCCTTT
*
103006 TTATTTTTGT-AAGATAAA
1 TTATTTTT-TAAAAATAAA
103024 GTTATTTTTTAAAAATAAA
1 -TTATTTTTTAAAAATAAA
*
103043 -TATAATTTTAAAAATAAA
1 TTAT-TTTTTAAAAATAAA
103061 T
1 T
103062 AGAATAATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
17 3 0.09
18 14 0.44
19 15 0.47
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.46
Consensus pattern (18 bp):
TTATTTTTTAAAAATAAA
Found at i:103716 original size:9 final size:9
Alignment explanation
Indices: 103702--103728 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
103692 TCCTAAACTA
103702 TTAAATTTT
1 TTAAATTTT
103711 TTAAATTTT
1 TTAAATTTT
103720 TTAAATTTT
1 TTAAATTTT
103729 AAATTTTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (9 bp):
TTAAATTTT
Found at i:103749 original size:23 final size:23
Alignment explanation
Indices: 103709--103782 Score: 62
Period size: 23 Copynumber: 3.1 Consensus size: 23
103699 CTATTAAATT
*
103709 TTTTAAATTT-TTTAAATTTTAAA
1 TTTT-AATTTATTTTAATTTTAAA
**
103732 TTTTAATTTATTTTAATTTTCTA
1 TTTTAATTTATTTTAATTTTAAA
103755 TTATT-ATCTATATTTTAATTTTTAAA
1 TT-TTAAT-T-TATTTTAA-TTTTAAA
103781 TT
1 TT
103783 AATATCTTGA
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
22 5 0.12
23 18 0.44
24 3 0.07
25 8 0.20
26 7 0.17
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (23 bp):
TTTTAATTTATTTTAATTTTAAA
Found at i:103788 original size:26 final size:25
Alignment explanation
Indices: 103740--103789 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
103730 AATTTTAATT
*
103740 TATTTTAATTTTCTATTATTATCTA
1 TATTTTAATTTTCTATTAATATCTA
103765 TATTTTAATTTT-TAAATTAATATCT
1 TATTTTAATTTTCT--ATTAATATCT
103790 TGACTCTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 1 0.05
25 12 0.55
26 9 0.41
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (25 bp):
TATTTTAATTTTCTATTAATATCTA
Found at i:107334 original size:20 final size:20
Alignment explanation
Indices: 107309--107348 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
107299 AAAATACAGC
107309 TTTGTAATCATCGTTTATTA
1 TTTGTAATCATCGTTTATTA
107329 TTTGTAATCATCGTTTATTA
1 TTTGTAATCATCGTTTATTA
107349 ATGAAATAGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.10, G:0.10, T:0.55
Consensus pattern (20 bp):
TTTGTAATCATCGTTTATTA
Found at i:108054 original size:21 final size:20
Alignment explanation
Indices: 108016--108054 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
108006 TAAGAAAAAG
* *
108016 AAAATTAAAAATATTTTTTT
1 AAAATGAAAAATAATTTTTT
108036 AAAATGAAAAACTAATTTT
1 AAAATGAAAAA-TAATTTT
108055 CCCCACCTCA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.41
Consensus pattern (20 bp):
AAAATGAAAAATAATTTTTT
Found at i:110262 original size:20 final size:20
Alignment explanation
Indices: 110239--110328 Score: 58
Period size: 20 Copynumber: 4.3 Consensus size: 20
110229 TATTAAATTT
110239 ATTAAATTATTATAAAAACA
1 ATTAAATTATTATAAAAACA
* *
110259 ATTAAAATATTA-AAATGACA
1 ATTAAATTATTATAAA-AACA
* ***
110279 A-TAAATTTAATATTTATTAAATTT
1 ATTAAA--T--TA-TTATAAAAACA
110303 ATTAAATTATTATAAAAACA
1 ATTAAATTATTATAAAAACA
110323 ATTAAA
1 ATTAAA
110329 ATACTAAAAT
Statistics
Matches: 50, Mismatches: 12, Indels: 16
0.64 0.15 0.21
Matches are distributed among these distances:
19 7 0.14
20 28 0.56
21 2 0.04
23 3 0.06
24 4 0.08
25 6 0.12
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.39
Consensus pattern (20 bp):
ATTAAATTATTATAAAAACA
Found at i:110298 original size:64 final size:64
Alignment explanation
Indices: 110229--110424 Score: 365
Period size: 64 Copynumber: 3.1 Consensus size: 64
110219 ATCAAATAAA
*
110229 TATTAAATTTATTAAATTATTATAAAAACAATTAAAATATTAAAATGACAATAAATTTAATATT
1 TATTAAATTTATTAAATTATTATAAAAACAATTAAAATATTAAAATGATAATAAATTTAATATT
*
110293 TATTAAATTTATTAAATTATTATAAAAACAATTAAAATACTAAAATGATAATAAATTTAATATT
1 TATTAAATTTATTAAATTATTATAAAAACAATTAAAATATTAAAATGATAATAAATTTAATATT
*
110357 TATTAAATTTATTAAATTATTATAAAAACAATTAAAATATTAAAATGATAATAAATTTAATAAT
1 TATTAAATTTATTAAATTATTATAAAAACAATTAAAATATTAAAATGATAATAAATTTAATATT
110421 TATT
1 TATT
110425 TTACCATAAT
Statistics
Matches: 128, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 128 1.00
ACGTcount: A:0.55, C:0.03, G:0.02, T:0.41
Consensus pattern (64 bp):
TATTAAATTTATTAAATTATTATAAAAACAATTAAAATATTAAAATGATAATAAATTTAATATT
Found at i:112127 original size:2 final size:2
Alignment explanation
Indices: 112120--112149 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
112110 CAAGGAATTA
112120 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
112150 TATTTTCAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Done.